Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0010120 | OGI:08034270 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:11816632-11819605 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccttggcacagcactacggctaacgcgtcactgactcggcgttcatccagggagcacaaccagtgtcagccaaactgccataagtccatcagccatgtagtactccatcaaggtaagaagtaatgcttcactatttgtttttcaaccaatttgatttattacagacaaaaccctgaatttttcatagacttgttgatgttattcttcgtgttgtagggttagaaagacagtacatttcaatatgggatcttattaatatttggagtaaaactactaattggaggcaaactgtaagttatgtgaaccgtcattctatttttatacttcaaatctgaaaatcagtacacttttacaaacaaaaattagtacagttttagaaattctgaaaatgcaaagatagagcatggtacttgattttttttctgtttctagtcaagagaaaacaaggatggtggatattaagcatttgttaataagaaaatgtttaaggttggcactgataattgacaaagatggactcttctgagaccaggaaaggaccgactgagatattacctaatacagagatgccgggcaaggttgataactcaaaaatcactaatcaacaaattgacttgatagcaaacatctgtcaatcagaacaaaaaaaccaaagaaggaagatgtaattcaaattacgccgcaagatacttgtattttctttataaattatgatgtcttttcttttgttcaaatgtgatttatttatgaaatcTttcgctatagattatatttgcactgaagaagacattcagatccttcgttatgtgagacaatttccagagagaaacggtcgtcgacatcggcggtgcctttctttacaaatatgacatgaactatctttttcatgacgatagttatgttaatggtgatgtaagtatagttatgtttagtacacatgccaaaacatagccaaaaataatctaatgtttttttataggttctaaatacttatattcattgtataagggaagaaaagcatcttattaatagagatggtcgaaacttatttttggagaacactattattttaagcattcttaaatgtgatggtgcctcaaacttaggtcacaaaaattataaggatgctactgttgtgacaagagtgaccaattatctatctagctaacgacatggtaatctctataatccctcatacatatcaactatattttagtgaataatactgacaaggagacgtttgatgcagctattcatcccaattaacatagaagaatctcactaatacctagcagttgttaatgaccataaacgcgagatacatgtactcgactcgctaggaataatggaccgtcgtgatctccatactaccttgagtaactattagatttttaattattgtttaattgcttattatttagattactgttattattgatcatttcatgttatatgttcaacatggtagctaaaaggactatatagacatatccagtttgcggctgaacataaagagcttagccaagaaaagtggcagaagcttgatgttacaacatggtccatcatagaaaagtttccggagagaatgcaaactgatgggtatgtttcagcacatgcttgtacaaatgattaccatctctttaactaaatagatggttcaatgcaacttttacatcctataatgaaggtcatcctgtggtctttggatgctaaactacgtacatggagtattggactggatgaaaactgtctgatagagtaactcaggtatttcattcaactcttcgttgcatgttcaattatataaatcatgagaacaatacatattctttgctgctattatttcgcaggaagatatcacaaaattcaggtctaagctagcttcaatattgtggtgctctaagtataacacaaggaaagtatgtatgcaacctgaaccaaaaaatgaagactatgagagtccaagtgatgtacagatagttgagactcctaatgatgtgctaaaaccgtctgaagtctcgcataggatcgaaccagatacatctttgtgtattgtagccccaggaacaacattaacaaacagaaaagagttgttgggtgcgctttgcaaatatgtcatgtcaattgattgtgctgaatcTttacagtaagtcagtttttcacccatacttatatgcatagaaaatattgaataaatattatctcgcttagactaattggttctttgatttttacaggaaagaatggattcggagcatgaagccatatccaatctctttgagcctcagaaatcttcaagacattctagatgtaaataagtcgatggacaaaggctgcttcaacatggctgttcggatgcttacatgcaactcacttctgttgtttctagatgatacaatccactacatggacctacaattctgggtgagctcatagaactattttctaactatatatcatgtctcactaagcacaaatattccgcatgacataccacctctgatttccatcgtgacctatggcgtcatgcaaaacttgatgtcaaacaattggctaaactgtttgaatgttggcttgccacggactacaacatttcaaactgtaccaaggaaagctatgtttcatttgtcttttgcggaaatcttactcttcaaccgtacattatgtttgcttccatgaattctttttgcagattctatttctgcattctttccttggtcacttcacattatttgtgctagacatgaaggctagaattgtctttatattgaacccactgcacattcctaatacaattaggggtcctcatccgaccctacactatgttcacaagatagctaatatagctgtcaatgctaagctcgcaatagaagaaaccaatccaacttggaacgatgacatttatctatggaatcgaaaaataccaagagatgttccaaaaacgaaaaaccggtactttcttactacctaa
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| CDS seq | atgccttggcacagcactacggctaacgcgtcactgactcggcgttcatccagggagcacaaccagtgtcagccaaactgccataagtccatcagccatgtagtactccatcaagggttagaaagacagtacatttcaatatgggatcttattaatatttggagtaaaactactaattggaggcaaactgaagatatcacaaaattcaggtctaagctagcttcaatattgtggtgctctaagtataacacaaggaaagtatgtatgcaacctgaaccaaaaaatgaagactatgagagtccaagtgatgtacagatagttgagactcctaatgatgtgctaaaaccgtctgaagtctcgcataggatcgaaccagatacatctttgtgtattgtagccccaggaacaacattaacaaacagaaaagagttgttgggtgcgctttgcaaatatgtcatgtcaattgattgtgctgaatcTttacagaaagaatggattcggagcatgaagccatatccaatctctttgagcctcagaaatcttcaagacattctagatgtaaataagtcgatggacaaaggctgcttcaacatggctgttcggatgcttacatgcaactcacttctgttgtttctagatgatacaatccactacatggacctacaattctggattctatttctgcattctttccttggtcacttcacattatttgtgctagacatgaaggctagaattgtctttatattgaacccactgcacattcctaatacaattaggggtcctcatccgaccctacactatgttcacaagatagctaatatagctgtcaatgctaagctcgcaatagaagaaaccaatccaacttggaacgatgacatttatctatggaatcgaaaaataccaagagatgttccaaaaacgaaaaaccggtactttcttactacctaa
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| Protein seq | MPWHSTTANASLTRRSSREHNQCQPNCHKSISHVVLHQGLERQYISIWDLINIWSKTTNWRQTEDITKFRSKLASILWCSKYNTRKVCMQPEPKNEDYESPSDVQIVETPNDVLKPSEVSHRIEPDTSLCIVAPGTTLTNRKELLGALCKYVMSIDCAESLQKEWIRSMKPYPISLSLRNLQDILDVNKSMDKGCFNMAVRMLTCNSLLLFLDDTIHYMDLQFWILFLHSFLGHFTLFVLDMKARIVFILNPLHIPNTIRGPHPTLHYVHKIANIAVNAKLAIEETNPTWNDDIYLWNRKIPRDVPKTKNRYFLTT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0010120 | OsLima_08g0010120.01 | Chr08 | 11816632 | 11819605 | + | NAM | ||
| CDS seq | atgccttggcacagcactacggctaacgcgtcactgactcggcgttcatccagggagcacaaccagtgtcagccaaactgccataagtccatcagccatgtagtactccatcaagggttagaaagacagtacatttcaatatgggatcttattaatatttggagtaaaactactaattggaggcaaactgaagatatcacaaaattcaggtctaagctagcttcaatattgtggtgctctaagtataacacaaggaaagtatgtatgcaacctgaaccaaaaaatgaagactatgagagtccaagtgatgtacagatagttgagactcctaatgatgtgctaaaaccgtctgaagtctcgcataggatcgaaccagatacatctttgtgtattgtagccccaggaacaacattaacaaacagaaaagagttgttgggtgcgctttgcaaatatgtcatgtcaattgattgtgctgaatcTttacagaaagaatggattcggagcatgaagccatatccaatctctttgagcctcagaaatcttcaagacattctagatgtaaataagtcgatggacaaaggctgcttcaacatggctgttcggatgcttacatgcaactcacttctgttgtttctagatgatacaatccactacatggacctacaattctggattctatttctgcattctttccttggtcacttcacattatttgtgctagacatgaaggctagaattgtctttatattgaacccactgcacattcctaatacaattaggggtcctcatccgaccctacactatgttcacaagatagctaatatagctgtcaatgctaagctcgcaatagaagaaaccaatccaacttggaacgatgacatttatctatggaatcgaaaaataccaagagatgttccaaaaacgaaaaaccggtactttcttactacctaa
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| Protein seq | MPWHSTTANASLTRRSSREHNQCQPNCHKSISHVVLHQGLERQYISIWDLINIWSKTTNWRQTEDITKFRSKLASILWCSKYNTRKVCMQPEPKNEDYESPSDVQIVETPNDVLKPSEVSHRIEPDTSLCIVAPGTTLTNRKELLGALCKYVMSIDCAESLQKEWIRSMKPYPISLSLRNLQDILDVNKSMDKGCFNMAVRMLTCNSLLLFLDDTIHYMDLQFWILFLHSFLGHFTLFVLDMKARIVFILNPLHIPNTIRGPHPTLHYVHKIANIAVNAKLAIEETNPTWNDDIYLWNRKIPRDVPKTKNRYFLTT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g20230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010770 | RBH | 0.000000 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0010610 | RBH | 0.425854 | 0.0 | 0.893137 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010950 | RBH | 0.0 | 0.0 | 2.004027 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010830 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013790 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0185900 | RBH | 0.601059 | 3.7075115 | 6.2985675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0189700 | RBH | 0.575823 | 2.9283495 | 7.1509825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010280 | RBH | 0.052176 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010440 | RBH | 0.0 | 0.0 | 0.681540 |
