Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0008950 | OGI:08029360 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:9763023-9766685 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGCCGCCGCCGCTCGCCGCCGCCGCCCTCCGCCGCCACGTCCTACGCGCCCTCCTCCCCCAATCTCGGCACCTCTGCCTCCTCGCCGCCCACTCCCCCTCCCCCTCCGACGACAGCGACTTCGAGCCTCCCGACCACCCCCTCCCCCGGGCCCCCGACGGCGACGGCGAGCTCGCCGCCTTCCTCCACCGCCTCTCCGACGCCTCCACCGCCGCGTCCTCCCCGAAGCACGCGCTGTCGCTTCTCCTGTCCTCGCCGCCCTCCCCGGGCCTACCTCCTGCCTCCCGCCGCGACCTCCTCGTCCGCGCGCTCTGGGAGCTCCGCCGCGACCCGGACGCGGCGGCCCTCGCGCTCCGGTGGGGGGAGGAGGGGTGCGCCGCCGCCGGGGAGCGCGCGGGGCCACCGCCCCCTCCCCCGCCGCCTGCCGAGGCGTGGCACCTGGCCATATGGGCCGCGGGGAAGGCGCGGCGGTTCGACCTCGCGTGGGCGGTCGTGCGCCGCATGCTGCGCCGCGGGGTGCTCACCAGCCGCGCCATGGTCATCGTGATGGAGAGGTGGGTTCTCTCCTCTTCGTAATCTGTCTCCATTTTTCTGTACAGAGGAGTATAtatagctttccatgttgagataagaaacagctttgtgatagtgctactgctatggcataagtatttgattgcttgggcagtattcaactgttgttgattggcttgtcagaattatgtgtttgctacttgtttatggtgatgtatgcctgcattttgaatgatttggtccgccttactgattggtactgccactgaatgtgcgcctccctcaagggacttgtacatcatattgatttggtgaacaagcagttatcagcttgcacaatcatattaggaagtaaaaatgttgcaaacaagcagcttctatggatccaggatccacttgaatattatgttataactgtgctattgtctatgatggtcaacaaatattcatggttggatcgatttattgaatggattagtgtttgggaatataaagctgttgcaagtccgtaagttaccatttcctgtgttgttagtgttttaactagtggtaattctgggatttggctcctttaatcttgttgaacttatgcattggatgaaaaatatatatgggtccatttgtcgtcttgctgtgagggggacatcataatgcctgctttgcagcagtccatattgtagtagcacttctttttttgtttttttttagttgagttgtttttatttgttgcataatggtcgacggtcatctcactgtaaggacatggctatttcaggtatgcagctgccaatgaagtgaacaaagcaatcaagacatttgatgcaatggagaagtttaaaacggaagcagatcaaactgtattttactcccttcttcgtgctctttgcaaaaataaaaacatagaggatgctgaggaattgcttctcatgagaaagaaattcttcccacttactgcagaaggtttcaatattattctagatggttggtgcaatgtaatcactgatatagctgaagcaaagagaatttggagagaaatgtcaaattactgcattactcctgatggcacatcttataccctcatggtcagttgttttgcaaaagttggaaacctttttgataccctgagggtttacgatgagatgaaaaagaggggttggactcctagtaTtgctgtttataattctcttatctatgtcctgacaaaagagaattgcatgaaggatgcacagaATatattcactagaattatcgatgaaggcctccaaccaaacgtcAaaacttacaacagtatgatagttccgctttgcgaaagtcgcaagcttgatgaagcacggatggtgttggaggacatgatgctgaagggaattgttccaaccattttgacataccatacatttctgagacaagaaaacattgatgaaaccctgaagctcttgaaaaaaatgaaggatgatggctgtggtcctaagagtgatacatttctcatgcttattgatagattttttcaattgaatgaacctggacatgctttgaagctctggaatgaaatgaaaagatatgacatcagaccttcttattcacactatatgtcagttgtgcaaggtttgatcaaacacggatgcatggaaagagctttagagtattatgatgaaatgaaggaaaatggctttgcttctgatccaaaacttgaaaaggagttcagaacctttttgttggccaacagagaccattggagaggagctggaaaatataatattattccacagcgtggcaaacattttgcaaggcggtcaagaattcagtgacattctgtgccattattatgaggacttaattaacgaaggtgcatattttggtctgaacagtttgccccacttatctctcgtgatcctgacatctgaggtacatatagtcatttgtgactaatgaataaccactgaactttccatgaacctaatttccaaatagtagctaacatagcTTTttttttttttgttgctaacacttctgaaattatttcctttgagcttggattccacctacaaattgttgccctccacagaaatttctaatgtggtcatggatcattaatatcatcttttaactcaaaagatgttaatcttgtatgttattctatagacaatcttttcacgtctttgcatgtctggagctgaaacaactattgttttttttgggcaaatttaaggaatcagacttttatggtttttaatggtttagcttatgccagaattagggatatccttctctttgcgatattcttttagagctatagttagtaacagaatgttagcccttatgatgtagagataagtaccaacgtcagacctttactatgggataaacatgcttttgacatattccattggccaaaaaagaaaattgcccatcatcttttagtaattcacatctttctagttttgcacaagcctctgtttttgttaaattggagatgcccgaagaaatcagagtagtaaggtagctgcacaacattgttattgtcttctacatgaacaatatttacatgtctgatgcctcaactgaagtatatatatatatatatatctatgatgctgcataatattgaaattattcattagtgattagtgtttattgagtgtaacagcagaatctgaagatcagtgtatgtcgaaaaaatatgactaatggtacaatgcagttactgtcaccTAtataaacgatatctactacatatcctaaatctctactgagtatggacgtctgatactttcagtacattgaaattgttcatcagagtttattctttattgaacatgaaaaatccacagttcagtacatgtagaagaaatatgacaagggaactatcttgttggacttgggcaccatattgctaactaatggataattctgcccactaattaccagtattgtaagacttgatgtcatatatttcaaattagagaaattgactcttggtcggccaaagaggatcttgtagttgtgttgtatttcctggagatcgcactactttaagtttcaaaaatatgacatcacctcaacacctcctaaaaacgtgctgctgacttgggtttttgcagcaggttactttcagttgggttggtcgtc
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| CDS seq | ATGGCGCCGCCGCCGCTCGCCGCCGCCGCCCTCCGCCGCCACGTCCTACGCGCCCTCCTCCCCCAATCTCGGCACCTCTGCCTCCTCGCCGCCCACTCCCCCTCCCCCTCCGACGACAGCGACTTCGAGCCTCCCGACCACCCCCTCCCCCGGGCCCCCGACGGCGACGGCGAGCTCGCCGCCTTCCTCCACCGCCTCTCCGACGCCTCCACCGCCGCGTCCTCCCCGAAGCACGCGCTGTCGCTTCTCCTGTCCTCGCCGCCCTCCCCGGGCCTACCTCCTGCCTCCCGCCGCGACCTCCTCGTCCGCGCGCTCTGGGAGCTCCGCCGCGACCCGGACGCGGCGGCCCTCGCGCTCCGGTGGGGGGAGGAGGGGTGCGCCGCCGCCGGGGAGCGCGCGGGGCCACCGCCCCCTCCCCCGCCGCCTGCCGAGGCGTGGCACCTGGCCATATGGGCCGCGGGGAAGGCGCGGCGGTTCGACCTCGCGTGGGCGGTCGTGCGCCGCATGCTGCGCCGCGGGGTGCTCACCAGCCGCGCCATGGTCATCGTGATGGAGAGgtatgcagctgccaatgaagtgaacaaagcaatcaagacatttgatgcaatggagaagtttaaaacggaagcagatcaaactgtattttactcccttcttcgtgctctttgcaaaaataaaaacatagaggatgctgaggaattgcttctcatgagaaagaaattcttcccacttactgcagaaggtttcaatattattctagatggttggtgcaatgtaatcactgatatagctgaagcaaagagaatttggagagaaatgtcaaattactgcattactcctgatggcacatcttataccctcatggtcagttgttttgcaaaagttggaaacctttttgataccctgagggtttacgatgagatgaaaaagaggggttggactcctagtaTtgctgtttataattctcttatctatgtcctgacaaaagagaattgcatgaaggatgcacagaATatattcactagaattatcgatgaaggcctccaaccaaacgtcAaaacttacaacagtatgatagttccgctttgcgaaagtcgcaagcttgatgaagcacggatggtgttggaggacatgatgctgaagggaattgttccaaccattttgacataccatacatttctgagacaagaaaacattgatgaaaccctgaagctcttgaaaaaaatgaaggatgatggctgtggtcctaagagtgatacatttctcatgcttattgatagattttttcaattgaatgaacctggacatgctttgaagctctggaatgaaatgaaaagatatgacatcagaccttcttattcacactatatgtcagttgtgcaaggtttgatcaaacacggatgcatggaaagagctttagagtattatgatgaaatgaaggaaaatggctttgcttctgatccaaaacttgaaaaggagttcagaacctttttgttggccaacagagaccattggagaggagctggaaaatataatattattccacagcgtggcaaacattttgcaaggcggtcaagaattcagtga
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| Protein seq | MAPPPLAAAALRRHVLRALLPQSRHLCLLAAHSPSPSDDSDFEPPDHPLPRAPDGDGELAAFLHRLSDASTAASSPKHALSLLLSSPPSPGLPPASRRDLLVRALWELRRDPDAAALALRWGEEGCAAAGERAGPPPPPPPPAEAWHLAIWAAGKARRFDLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEADQTVFYSLLRALCKNKNIEDAEELLLMRKKFFPLTAEGFNIILDGWCNVITDIAEAKRIWREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENCMKDAQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTILTYHTFLRQENIDETLKLLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRYDIRPSYSHYMSVVQGLIKHGCMERALEYYDEMKENGFASDPKLEKEFRTFLLANRDHWRGAGKYNIIPQRGKHFARRSRIQ |
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| Function | Pentatricopeptide repeat-containing protein At1g80880, mitochondrial [UniProtKB/Swiss-Prot:Q9SAH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0008950 | OsLima_08g0008950.01 | Chr08 | 9763023 | 9766685 | + | NAM | ||
| CDS seq | ATGGCGCCGCCGCCGCTCGCCGCCGCCGCCCTCCGCCGCCACGTCCTACGCGCCCTCCTCCCCCAATCTCGGCACCTCTGCCTCCTCGCCGCCCACTCCCCCTCCCCCTCCGACGACAGCGACTTCGAGCCTCCCGACCACCCCCTCCCCCGGGCCCCCGACGGCGACGGCGAGCTCGCCGCCTTCCTCCACCGCCTCTCCGACGCCTCCACCGCCGCGTCCTCCCCGAAGCACGCGCTGTCGCTTCTCCTGTCCTCGCCGCCCTCCCCGGGCCTACCTCCTGCCTCCCGCCGCGACCTCCTCGTCCGCGCGCTCTGGGAGCTCCGCCGCGACCCGGACGCGGCGGCCCTCGCGCTCCGGTGGGGGGAGGAGGGGTGCGCCGCCGCCGGGGAGCGCGCGGGGCCACCGCCCCCTCCCCCGCCGCCTGCCGAGGCGTGGCACCTGGCCATATGGGCCGCGGGGAAGGCGCGGCGGTTCGACCTCGCGTGGGCGGTCGTGCGCCGCATGCTGCGCCGCGGGGTGCTCACCAGCCGCGCCATGGTCATCGTGATGGAGAGgtatgcagctgccaatgaagtgaacaaagcaatcaagacatttgatgcaatggagaagtttaaaacggaagcagatcaaactgtattttactcccttcttcgtgctctttgcaaaaataaaaacatagaggatgctgaggaattgcttctcatgagaaagaaattcttcccacttactgcagaaggtttcaatattattctagatggttggtgcaatgtaatcactgatatagctgaagcaaagagaatttggagagaaatgtcaaattactgcattactcctgatggcacatcttataccctcatggtcagttgttttgcaaaagttggaaacctttttgataccctgagggtttacgatgagatgaaaaagaggggttggactcctagtaTtgctgtttataattctcttatctatgtcctgacaaaagagaattgcatgaaggatgcacagaATatattcactagaattatcgatgaaggcctccaaccaaacgtcAaaacttacaacagtatgatagttccgctttgcgaaagtcgcaagcttgatgaagcacggatggtgttggaggacatgatgctgaagggaattgttccaaccattttgacataccatacatttctgagacaagaaaacattgatgaaaccctgaagctcttgaaaaaaatgaaggatgatggctgtggtcctaagagtgatacatttctcatgcttattgatagattttttcaattgaatgaacctggacatgctttgaagctctggaatgaaatgaaaagatatgacatcagaccttcttattcacactatatgtcagttgtgcaaggtttgatcaaacacggatgcatggaaagagctttagagtattatgatgaaatgaaggaaaatggctttgcttctgatccaaaacttgaaaaggagttcagaacctttttgttggccaacagagaccattggagaggagctggaaaatataatattattccacagcgtggcaaacattttgcaaggcggtcaagaattcagtga
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| Protein seq | MAPPPLAAAALRRHVLRALLPQSRHLCLLAAHSPSPSDDSDFEPPDHPLPRAPDGDGELAAFLHRLSDASTAASSPKHALSLLLSSPPSPGLPPASRRDLLVRALWELRRDPDAAALALRWGEEGCAAAGERAGPPPPPPPPAEAWHLAIWAAGKARRFDLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEADQTVFYSLLRALCKNKNIEDAEELLLMRKKFFPLTAEGFNIILDGWCNVITDIAEAKRIWREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENCMKDAQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTILTYHTFLRQENIDETLKLLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRYDIRPSYSHYMSVVQGLIKHGCMERALEYYDEMKENGFASDPKLEKEFRTFLLANRDHWRGAGKYNIIPQRGKHFARRSRIQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.079775 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0272200 | RBH | 1.106068 | 1.124691 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g17080 | RBH | 0.614876 | 0.822394 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0272200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0009390 | RBH | 0.331263 | 1.535483 | 0.371100 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009480 | RBH | 0.281643 | 0.000000 | 1.630133 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0009600 | RBH | 0.492857 | 0.0 | 1.542482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0009440 | RBH | 0.0 | 0.058226 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0009390 | RBH | 3.330449 | 2.013841 | 6.582411 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0159400 | RBH | 2.6365675 | 3.9135295 | 1.4790545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0009420 | RBH | 0.110606 | 0.093544 | 0.466122 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0160100 | RBH | 1.8593215 | 4.1425185 | 3.739854 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010790 | RBH | 0.942547 | 0.283133 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0009160 | RBH | 0.426565 | 3.377401 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0009020 | RBH | 4.810800 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0009810 | RBH | 0.385996 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0009120 | RBH | 0.200085 | 1.817389 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009300 | RBH | 0.578498 | 0.0 | 0.219701 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0009230 | RBH | 0.792780 | 4.626156 | 3.610883 |
