Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0007350 | OGI:08022890 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:7476320-7476583 | ||||||||
| Gene Symbol | OsSub22, SUB22, OsSASP, SASP | ||||||||||
| DNA seq | atgtcccccgccgcgtacaagatctgctggaaatccggctgctatgactccgacatcctcgccgccatggacgaggccgccgcggacggcgtcgacgtcatctccctctccgtcgacgctggcggctacgccccaagcttcttccgcgactccatcgccatcggctccctccacgccgttagcaagggcattgtggtgtccgcgtccgctggcaactccggcccggcgagtacaccgcaacaaacatcacgccatggatactga |
||||||||||
| CDS seq | atgtcccccgccgcgtacaagatctgctggaaatccggctgctatgactccgacatcctcgccgccatggacgaggccgccgcggacggcgtcgacgtcatctccctctccgtcgacgctggcggctacgccccaagcttcttccgcgactccatcgccatcggctccctccacgccgttagcaagggcattgtggtgtccgcgtccgctggcaactccggcccggcgagtacaccgcaacaaacatcacgccatggatactga |
||||||||||
| Protein seq | MSPAAYKICWKSGCYDSDILAAMDEAAADGVDVISLSVDAGGYAPSFFRDSIAIGSLHAVSKGIVVSASAGNSGPASTPQQTSRHGY |
||||||||||
| Function | Subtilisin-like protease SBT1.4 [UniProtKB/Swiss-Prot:Q9LVJ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0007350 | OsLima_08g0007350.01 | Chr08 | 7476320 | 7476583 | + | NAM | ||
| CDS seq | atgtcccccgccgcgtacaagatctgctggaaatccggctgctatgactccgacatcctcgccgccatggacgaggccgccgcggacggcgtcgacgtcatctccctctccgtcgacgctggcggctacgccccaagcttcttccgcgactccatcgccatcggctccctccacgccgttagcaagggcattgtggtgtccgcgtccgctggcaactccggcccggcgagtacaccgcaacaaacatcacgccatggatactga
More
|
|||||||
| Protein seq | MSPAAYKICWKSGCYDSDILAAMDEAAADGVDVISLSVDAGGYAPSFFRDSIAIGSLHAVSKGIVVSASAGNSGPASTPQQTSRHGY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0452100 | SBH | 0.0 | 0.0 | 0.414386 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g53860 | SBH | 6.562682 | 4.671289 | 0.966416 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0452100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018160 | SBH | 0.0 | 0.912738 | 1.276815 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007790 | RBH | 0.0 | 0.687911 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007910 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007730 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0129100 | RBH | 0.094569 | 0.3220125 | 0.024491 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007690 | RBH | 0.144415 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0122100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0035550 | RBH | 0.714694 | 0.546605 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007960 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007690 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007510 | RBH | 0.0 | 0.0 | 0.0 |
