Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0007210 | OGI:08022550 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:7345253-7350106 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtaaattgaagtttgctcgggttcaaaaatatttctagatccgctaataagtatatgcaacctgtagggttttcgccaactatAGaaagtatgctatgtctttaggatagtgacccaattagttttcttgctatatatgcatcaactgacatatgtaacacgttcgaattgcaaactctataataaagggttgtagtttttctgaagcaaaggctaaaataaattccattacctaaacaaaaatatgccagtagcaggtagatatctacatgctgaccggttttggttgttcaagctttgggtactgtagctcataaacgcactcaaagaagaggcaataccctatcagggttggaaatttcggaaatttcggtcatttcggtgacccccgatacgatattaatttagccgaaatttttgaatttttcaaTtttttttcatgaatttggataatatttattcaaatacaactaaattttgttcaaaatttcagaaatttcagaccgaaattccaaaatttttaaaattttgggatttcggtgaccccagtagaaaacactaaaccaatatagtgaaccacgtaccgtatatgtatcgctcttggtactgtatcacatacaacaacagccatgtcgatccactggatagaaaagccgtaagaagagcctatactaggatcggttCCcccagctagggatgaaaacggagtggatagtttccgtccgCTctggataaaaacgaatacggatacctttcggatcggataattctcggatagttcggatacggatacggataTTttctctcggatacgaatacgaatatggtatcagagtttccgtcggatatggataataattcggatatccggtaaacagtgttattcggatatccgcagaagccacaagacatatctcatttctttataactctatgaccttcaatatacctttttagaTTttaatagtagttcatctcttaacactagtccacattattaatattatttaaaattttaaaaatatttataaattatactacattttatataaaatgagctaattatatatgttgatatttgtttctattagaagttgaatttgttttcatgttccgagaaaaatttgtttccgtattcgtgtccgatcatattctattcttattcgtattcgagatagtccgtatttgtttccgtattcgagctatccgtattcgtttccgtctccggcaaaaaatatgaaaacgaatatggtatgagcattatccgttcgtatccgctccgttttcatccctacccccagcacattatcccaacacctttcctctcaacttattcagttgaagtcgctcttcagAaatataggcacgactgtgtgtttgatccttggggttgggaactcaactccaccgcatggaaaatggagcgatccattagtacatgattaattaagtattagattttttttaaaaaaatagattaatttgatttttttaaagcaactttcgtatagaaactttttgcaaaaaacatatcattaagctgtttgaaaagcgtgcgcgcggaaaacggaggagtgaggttgggaaccttgtggaaggaacacagactgtcttgattcttgagctgatactaccgttctcaaatagaaatatgaagtactctaaaagagcaagttttatataaaatagaggccagtggttgctaactctaatttaatccatatcatcacaaccccccttaatttaatactatcattttcctctacagtttgtgtacagattgtctcttacgtatggtggcaagtttaataggctccaattcatctatagccaatctaatagctcattcatataatagttacctataagtatatactacatcactaatatatagtcccacctctcatacacacaaaatgtattggagtttgtgctgcagctggctacaaatctgtagcccgcttTTCttctctcttttctcttctctcctccatgtgtgcttagagctgacttagagcagtcccaacccatagtgtccataagcagtgtctatggtgccatgtcaataagacatcacaatagaaactacactctactctacaacccatggtttcttaaagtgggccattAataaatacatcatctctcttctctaccaatcatatttattcttcatctattaggaagacattattctctcccaatgcaaaacttgatagtgtctaatgcataggttctcgtgttgaagctgtgtcttgcataagacccagtttcttcCTctcttcactctctctctctcaattaatatagtgtcacataagctaaaagtcctacatagcaatgtagttaatgccatagacaccatcctaggtggaggattaggactgcccatatagcctgctattgtactcgctgtaaggcatctactatggcagcaagacaagattctcgtaggctctcatacccttcactcaaagccacatcgcccaatccatggaccgatgaggaggtgataaattcaaaacacacatccttcaatatgctgcaatcatgctgatcagttagggcaaacatctccttgacgttgcctaagctaaggaccttgcagagtccgtcttcgagcatcgtcttcaacccctcgacagcgtagcgatccacggtaatgagcagatgcttgatcaactccttcctctcttcttcaccgagatatttctcttccctctcattggcccgtcttatggtgctagcgacacgatcaatggtgttcaaagtggagctccacgggccaatgaggcgcgagagagggcatgagataaccatccaggacacatacacaacatgttgcatgtcctagatggttatcttgtgccctctctcgcctctaatcagcctgttgagctccgctttgaacaccggtgatcgtgccaccagcaccatgctatgcgcgtcgatggcctcaccgttgaccttgaagctcacgtcgactccgtccggtctccatctctagcagcttgccaatgtcttctgacagttgcgaccaaggagaagaaggtgatcggatgatttccgcgatcgcttcgatccttactaatggcgtgacatcgcactcgattacgaggcgaacgtcttgtagatactccgatgcgacttctagcttgctcctgtcagcgaatttcttggttccccaggtgaaagatttgttAtcatcgatagagtcatagattttgagTgggcaggtgtaccacaagcaaggacagGCggtgacatggttgagtagtctgagcttgtaggaggctctcgccttggttcccttggtgatgagctcaaggtagacgctgatttggtctttggctcccgtttctctatcggccaccatctgtatataaatgagaatcaggcattcctggaggtcactcgatgccggtggtaatcatgcgtagtctacaccttgtcatcTtgcctagcagaggaagaacggaatgggggatttggggaaaggaggtaggatgagagaggaaagaatagaacatgtagaggttgaaagtgatgtactctctccgttccaaggaaagccaacctagctgcggatcagtttattcatatccgttgtcctaggtggtgtcacactgtcatattcctatgtaggttggattttttttttttggacatacgagtattcagttttcattaaagtacgtattccgtaaggcatagaaaaataatggccaaaagaccaacattataacatattgtatccacttatcactacctttattaatctgtacaattgtccagttgtcctaataattaaggcttgcaaaatttgcttgacttctctaaaacctcgaccaagagcaaagggcaagaagtacggagctgcacgtacccctggctcgccttcacctcctccatcttccccgacgtcgccatgaactcgatgcaagcatccttgagcgtctcgcagtgctgccggtcggccagcgccagcatgtcggcgacgttgccggcgtcgagcctcccgcgcagcgcgcgctcgcagatcagcttcagcctctccacgccgtaccggtcggcggcgaccaggaggtcgctccacgttgcctccatgtcgtcgtcgtcggcggcggcggggagggcgtcggtgtagatgtagcggagcagcgcgtcgaacacgtcggggcgcatgtcgtcgatggcgatcggtccgccgccgcggccgctctccctcatctcgccgtacaccgccgccctgaacaccggcgagcgcatggcgaggatgacccggtgcgcggcgaagagctcgccgtcgacggagaacgtcacgtccgcgccctccttggtgtcgtagacgttgccgagctgggccagcatgtccgagggcggcagcacgtcgtcgtcgccgacgccggcgtccggaggcagcggctcgtccgggacgacggtgacgtcgacccggaacacgacggcgtggtcgcggacgaacagtgtcgcctcctcggcgagcatggccttgggccagactatgatgaccatggggtggtgggggtggtcgaagaggaagggcggcatccgcacgatgacgttgtgggaggcggcgtcgacggggccgaactcgaaggacgccctggccttggcgccggcggtgaggagctcgacgccgaagccgaagaagccggcgaaggtggtggggtggaaccagaggcaccactggtagccgccggcggcgaagggcagggaacggatcgggggcctcgcgcgcggggcgaagccgaaggggtcgccgtagccgaaggcggcgtagaggctgtcgtcggagaccacgatagtccccgtccccgtgaaatagtccat
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| CDS seq | atggactatttcacggggacggggactatcgtggtctccgacgacagcctctacgccgccttcggctacggcgaccccttcggcttcgccccgcgcgcgaggcccccgatccgttccctgcccttcgccgccggcggctaccagtggtgcctctggttccaccccaccaccttcgccggcttcttcggcttcggcgtcgagctcctcaccgccggcgccaaggccagggcgtccttcgagttcggccccgtcgacgccgcctcccacaacgtcatcgtgcggatgccgcccttcctcttcgaccacccccaccaccccatggtcatcatagtctggcccaaggccatgctcgccgaggaggcgacactgttcgtccgcgaccacgccgtcgtgttccgggtcgacgtcaccgtcgtcccggacgagccgctgcctccggacgccggcgtcggcgacgacgacgtgctgccgccctcggacatgctggcccagctcggcaacgtctacgacaccaaggagggcgcggacgtgacgttctccgtcgacggcgagctcttcgccgcgcaccgggtcatcctcgccatgcgctcgccggtgttcagggcggcggtgtacggcgagatgagggagagcggccgcggcggcggaccgatcgccatcgacgacatgcgccccgacgtgttcgacgcgctgctccgctacatctacaccgacgccctccccgccgccgccgacgacgacgacatggaggcaacgtggagcgacctcctggtcgccgccgaccggtacggcgtggagaggctgaagctgatctgcgagcgcgcgctgcgcgggaggctcgacgccggcaacgtcgccgacatgctggcgctggccgaccggcagcactgcgagacgctcaaggatgcttgcatcgagttcatggcgacgtcggggaagatggaggaggtgaaggcgagccaggggtacgtgcagctccgtacttcttgccctttgctcttggtcgagatggtggccgatagagaaacgggagccaaagaccaaatcagcgtctaccttgagctcatcaccaagggaaccaaggcgagagcctcctacaagctcagactactcaaccatgtcaccGCctgtccttgcttgtggtacacctgcccActcaaaatctatgactctatcgatgaTaacaaatctttcacctggggaaccaagaaattcgctgacaggagcaagctagaagtcgcatcggagtatctacaagacgttcgcctcgtaatcgagtgcgatgtcacgccattagtaaggatcgaagcgatcgcggaaatcatccgatcaccttcttctccttggtcgcaactgtcagaagacattggcaagctgctagagatggagaccggacggagtcgacgtgagcttcaaggtcaacgctccactttgaacaccattgatcgtgtcgctagcaccataagacgggccaatgagagggaagagaaatatctcggtgaagaagagaggaaggagttgatcaagcatctgctcattaccgtggatcgctacgctgtcgaggggttgaagacgatgctcgaagacggactctgcaaggtccttagcttaggcaacgtcaaggagatgtttgccctaactgatcagcatgattgcagcatattgaaggatgtgtgttttgaatttatcacctcctcatcggtccatggattgggcgatgtggctttgagtgaaggaaatatttttgaacccgagcaaacttcaatttactaa
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| Protein seq | MDYFTGTGTIVVSDDSLYAAFGYGDPFGFAPRARPPIRSLPFAAGGYQWCLWFHPTTFAGFFGFGVELLTAGAKARASFEFGPVDAASHNVIVRMPPFLFDHPHHPMVIIVWPKAMLAEEATLFVRDHAVVFRVDVTVVPDEPLPPDAGVGDDDVLPPSDMLAQLGNVYDTKEGADVTFSVDGELFAAHRVILAMRSPVFRAAVYGEMRESGRGGGPIAIDDMRPDVFDALLRYIYTDALPAAADDDDMEATWSDLLVAADRYGVERLKLICERALRGRLDAGNVADMLALADRQHCETLKDACIEFMATSGKMEEVKASQGYVQLRTSCPLLLVEMVADRETGAKDQISVYLELITKGTKARASYKLRLLNHVTACPCLWYTCPLKIYDSIDDNKSFTWGTKKFADRSKLEVASEYLQDVRLVIECDVTPLVRIEAIAEIIRSPSSPWSQLSEDIGKLLEMETGRSRRELQGQRSTLNTIDRVASTIRRANEREEKYLGEEERKELIKHLLITVDRYAVEGLKTMLEDGLCKVLSLGNVKEMFALTDQHDCSILKDVCFEFITSSSVHGLGDVALSEGNIFEPEQTSIY |
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| Function | BTB/POZ and MATH domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9M8J9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0007210 | OsLima_08g0007210.01 | Chr08 | 7345253 | 7350106 | - | NAM | ||
| CDS seq | atggactatttcacggggacggggactatcgtggtctccgacgacagcctctacgccgccttcggctacggcgaccccttcggcttcgccccgcgcgcgaggcccccgatccgttccctgcccttcgccgccggcggctaccagtggtgcctctggttccaccccaccaccttcgccggcttcttcggcttcggcgtcgagctcctcaccgccggcgccaaggccagggcgtccttcgagttcggccccgtcgacgccgcctcccacaacgtcatcgtgcggatgccgcccttcctcttcgaccacccccaccaccccatggtcatcatagtctggcccaaggccatgctcgccgaggaggcgacactgttcgtccgcgaccacgccgtcgtgttccgggtcgacgtcaccgtcgtcccggacgagccgctgcctccggacgccggcgtcggcgacgacgacgtgctgccgccctcggacatgctggcccagctcggcaacgtctacgacaccaaggagggcgcggacgtgacgttctccgtcgacggcgagctcttcgccgcgcaccgggtcatcctcgccatgcgctcgccggtgttcagggcggcggtgtacggcgagatgagggagagcggccgcggcggcggaccgatcgccatcgacgacatgcgccccgacgtgttcgacgcgctgctccgctacatctacaccgacgccctccccgccgccgccgacgacgacgacatggaggcaacgtggagcgacctcctggtcgccgccgaccggtacggcgtggagaggctgaagctgatctgcgagcgcgcgctgcgcgggaggctcgacgccggcaacgtcgccgacatgctggcgctggccgaccggcagcactgcgagacgctcaaggatgcttgcatcgagttcatggcgacgtcggggaagatggaggaggtgaaggcgagccaggggtacgtgcagctccgtacttcttgccctttgctcttggtcgagatggtggccgatagagaaacgggagccaaagaccaaatcagcgtctaccttgagctcatcaccaagggaaccaaggcgagagcctcctacaagctcagactactcaaccatgtcaccGCctgtccttgcttgtggtacacctgcccActcaaaatctatgactctatcgatgaTaacaaatctttcacctggggaaccaagaaattcgctgacaggagcaagctagaagtcgcatcggagtatctacaagacgttcgcctcgtaatcgagtgcgatgtcacgccattagtaaggatcgaagcgatcgcggaaatcatccgatcaccttcttctccttggtcgcaactgtcagaagacattggcaagctgctagagatggagaccggacggagtcgacgtgagcttcaaggtcaacgctccactttgaacaccattgatcgtgtcgctagcaccataagacgggccaatgagagggaagagaaatatctcggtgaagaagagaggaaggagttgatcaagcatctgctcattaccgtggatcgctacgctgtcgaggggttgaagacgatgctcgaagacggactctgcaaggtccttagcttaggcaacgtcaaggagatgtttgccctaactgatcagcatgattgcagcatattgaaggatgtgtgttttgaatttatcacctcctcatcggtccatggattgggcgatgtggctttgagtgaaggaaatatttttgaacccgagcaaacttcaatttactaa
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| Protein seq | MDYFTGTGTIVVSDDSLYAAFGYGDPFGFAPRARPPIRSLPFAAGGYQWCLWFHPTTFAGFFGFGVELLTAGAKARASFEFGPVDAASHNVIVRMPPFLFDHPHHPMVIIVWPKAMLAEEATLFVRDHAVVFRVDVTVVPDEPLPPDAGVGDDDVLPPSDMLAQLGNVYDTKEGADVTFSVDGELFAAHRVILAMRSPVFRAAVYGEMRESGRGGGPIAIDDMRPDVFDALLRYIYTDALPAAADDDDMEATWSDLLVAADRYGVERLKLICERALRGRLDAGNVADMLALADRQHCETLKDACIEFMATSGKMEEVKASQGYVQLRTSCPLLLVEMVADRETGAKDQISVYLELITKGTKARASYKLRLLNHVTACPCLWYTCPLKIYDSIDDNKSFTWGTKKFADRSKLEVASEYLQDVRLVIECDVTPLVRIEAIAEIIRSPSSPWSQLSEDIGKLLEMETGRSRRELQGQRSTLNTIDRVASTIRRANEREEKYLGEEERKELIKHLLITVDRYAVEGLKTMLEDGLCKVLSLGNVKEMFALTDQHDCSILKDVCFEFITSSSVHGLGDVALSEGNIFEPEQTSIY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0227400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13250 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0227400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007590 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007660 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007770 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007600 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0127600 | RBH | 0.018628 | 0.007446 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007550 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0119400 | RBH | 0.073546 | 0.0555885 | 0.009548 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007820 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007560 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007370 | RBH | 0.0 | 0.0 | 0.0 |
