Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006840 | OGI:08020910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:6866232-6868212 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccaccgtcctcgtggtgttgatggtcgtcagcaccggcggcttatccccaccatgtgcggccgcagcgaaggaggagaagccagtggtggtgctgccaccagcggcggcgccaggggaggcgccctccgcggaggcggcagcgttcgtccgctcctgctgcgaaaccgccctgccggccgagcgcgacgcctccagcttttgctacgacgagctgctcccctacgctgactccttcggaggcaaccaggtgaaggtcaccgaggtggccgccaccatcctgagcaacaacctctcggcctacctcgacgagttgcgcaaggtccaggacggggccggcaagggggaccagaacctgatgggctgcgtcgatggctttaccgatgccaccaacgtgaacatcaccaaggaggcgctggacagcctcggccgtcttgccgccgCcggagatggcaaGcgcagcaaggaggatctggagaatgtgcagaactggatcaaaggggtggacaaacactacgtcggagggaacgcggctgggtccgattgcgagacaggttacctgtacacttataacgatgatctccccgcccaggaaacccttggaaattgtctctacactgccagctcccttatcaatcacataaagctttaataagtcaagctatatttatagccttccatgcatgctttctagctatctactaagtagaagtacattattttattaattatacttgttaattaccatgatcgattagtggtgttatccaagatttttggtaacattttttttctcaattttccatttcatatattcccaactctcaattctacattatatatcattttttcattcaacttcatccataccaatataaaaagcactagttcatcaaacacctctctctcgtgatccttacatctattcatgcaactgtttatattaaaagttcaaccctagattcccacgtcggtaaacagcggttagtgaaagtcagtgaaaataaaaagaaaagaatccaccgccgccgaaaaaGaaaaaaaaaaaGaaaacctatcctcctgcgatgcgccgcccgccactcgtctcctGCgcgcccgccggcgccactccgctcacgcggctgcgcccgccgccgccgctctccggagccgttccgccgccgccgctccgctcgggcgcggctgcgcccgccgccgcctcctcccgccggcgccgctcgccggagccgctccgctcgcgcgcggctgcgcgcctgatggcgcCGcctcccgctggagccgctcgccctaccccgccgcctcctcacacgcgcccgtcgccgcctcggatccgtgtgtcgccgccgtctctgttgctcgactccactgggagcagggtaccaccgtcatcgccgagggagcgggccgctcggagccgcaggacgcgccgccgccgccgctgtgggtcgccgccttctccgccgctcgccgggtctgctctctccctcctcgctcgttggcagatatgttccagataagtggttttctgaaggctctgttcttttggttgagttgggaacccatccctccggtacgaaaaacaaaacagtccattagcacatgattaattaattatttgctaattttttttcaaaaatggatcaatataatttttttaagcaactttcgtatataaactttttgcaaaaaacacaccgtttagcagtttgaaaagcatgagcgcggaaaatgagatgggggagttgggaactccaggaaacgaacagagcctatgctacgtctgtagaagccccaaatcatgaatacttaggagaatggagataaaggctgaacttgctatcccttttactagccaaaaccagtctggttaagaggaaatccttaacagtacaaactgaatccttcctctaaaccaggttatttcagtCTGACTTACATGTTCTATTCTATTTCAGTTGGTGATTAAACGTTGGTAG
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| CDS seq | atggccaccgtcctcgtggtgttgatggtcgtcagcaccggcggcttatccccaccatgtgcggccgcagcgaaggaggagaagccagtggtggtgctgccaccagcggcggcgccaggggaggcgccctccgcggaggcggcagcgttcgtccgctcctgctgcgaaaccgccctgccggccgagcgcgacgcctccagcttttgctacgacgagctgctcccctacgctgactccttcggaggcaaccaggtgaaggtcaccgaggtggccgccaccatcctgagcaacaacctctcggcctacctcgacgagttgcgcaaggtccaggacggggccggcaagggggaccagaacctgatgggctgcgtcgatggctttaccgatgccaccaacgtgaacatcaccaaggaggcgctggacagcctcggccgtcttgccgccgCcggagatggcaaGcgcagcaaggaggatctggagaatgtgcagaactggatcaaaggggtggacaaacactacgtcggagggaacgcggctgggtccgattgcgagacagaatccaccgccgccgaaaaaGaaaaaaaaaaaGaaaacctatcctcctgcgatgcgccgcccgccactcgtctcctGCgcgcccgccggcgccactccgctcacgcggctgcgcccgccgccgccgctctccggagccgttccgccgccgccgctccgctcgggcgcggctgcgcccgccgccgcctcctcccgccggcgccgctcgccggagccgctccgctcgcgcgcggctgcgcgcctgatggcgcCGcctcccgctggagccgctcgccctaccccgccgcctcctcacacgcgcccgtcgccgcctcggatccgtgtgtcgccgccgtctctgttgctcgactccactgggagcagggtaccaccgtcatcgccgagggagcgggccgctcggagccgcaggacgcgccgccgccgccgctgtgggtcgccgccttctccgccgctcgccggTTGGTGATTAAACGTTGGTAG
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| Protein seq | MATVLVVLMVVSTGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSAEAAAFVRSCCETALPAERDASSFCYDELLPYADSFGGNQVKVTEVAATILSNNLSAYLDELRKVQDGAGKGDQNLMGCVDGFTDATNVNITKEALDSLGRLAAAGDGKRSKEDLENVQNWIKGVDKHYVGGNAAGSDCETESTAAEKEKKKENLSSCDAPPATRLLRARRRHSAHAAAPAAAALRSRSAAAAPLGRGCARRRLLPPAPLAGAAPLARGCAPDGAASRWSRSPYPAASSHAPVAASDPCVAAVSVARLHWEQGTTVIAEGAGRSEPQDAPPPPLWVAAFSAARRLVIKRW |
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| Function | Uncharacterized protein Os08g0218700/LOC_Os08g12160 [UniProtKB/Swiss-Prot:Q6YUE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006840 | OsLima_08g0006840.01 | Chr08 | 6866232 | 6868212 | + | NAM | ||
| CDS seq | atggccaccgtcctcgtggtgttgatggtcgtcagcaccggcggcttatccccaccatgtgcggccgcagcgaaggaggagaagccagtggtggtgctgccaccagcggcggcgccaggggaggcgccctccgcggaggcggcagcgttcgtccgctcctgctgcgaaaccgccctgccggccgagcgcgacgcctccagcttttgctacgacgagctgctcccctacgctgactccttcggaggcaaccaggtgaaggtcaccgaggtggccgccaccatcctgagcaacaacctctcggcctacctcgacgagttgcgcaaggtccaggacggggccggcaagggggaccagaacctgatgggctgcgtcgatggctttaccgatgccaccaacgtgaacatcaccaaggaggcgctggacagcctcggccgtcttgccgccgCcggagatggcaaGcgcagcaaggaggatctggagaatgtgcagaactggatcaaaggggtggacaaacactacgtcggagggaacgcggctgggtccgattgcgagacagaatccaccgccgccgaaaaaGaaaaaaaaaaaGaaaacctatcctcctgcgatgcgccgcccgccactcgtctcctGCgcgcccgccggcgccactccgctcacgcggctgcgcccgccgccgccgctctccggagccgttccgccgccgccgctccgctcgggcgcggctgcgcccgccgccgcctcctcccgccggcgccgctcgccggagccgctccgctcgcgcgcggctgcgcgcctgatggcgcCGcctcccgctggagccgctcgccctaccccgccgcctcctcacacgcgcccgtcgccgcctcggatccgtgtgtcgccgccgtctctgttgctcgactccactgggagcagggtaccaccgtcatcgccgagggagcgggccgctcggagccgcaggacgcgccgccgccgccgctgtgggtcgccgccttctccgccgctcgccggTTGGTGATTAAACGTTGGTAG
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| Protein seq | MATVLVVLMVVSTGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSAEAAAFVRSCCETALPAERDASSFCYDELLPYADSFGGNQVKVTEVAATILSNNLSAYLDELRKVQDGAGKGDQNLMGCVDGFTDATNVNITKEALDSLGRLAAAGDGKRSKEDLENVQNWIKGVDKHYVGGNAAGSDCETESTAAEKEKKKENLSSCDAPPATRLLRARRRHSAHAAAPAAAALRSRSAAAAPLGRGCARRRLLPPAPLAGAAPLARGCAPDGAASRWSRSPYPAASSHAPVAASDPCVAAVSVARLHWEQGTTVIAEGAGRSEPQDAPPPPLWVAAFSAARRLVIKRW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.008604 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0222800 | RBH | 0.0 | 0.0 | 8.244932 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12600 | RBH | 0.0 | 0.0 | 1.793670 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0222800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007240 | RBH | 0.156960 | 0.0 | 3.977659 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007310 | RBH | 0.0 | 0.0 | 7.847615 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007410 | RBH | 0.0 | 0.0 | 11.923035 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007200 | RBH | 0.0 | 0.0 | 20.257929 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0118300 | RBH | 1.3433125 | 3.95913 | 5.7880165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007150 | RBH | 0.0 | 0.0 | 3.526272 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0111000 | RBH | 0 | 0 | 0.0127395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006930 | SBH | 0.188160 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007420 | RBH | 0.0 | 0.0 | 1.091284 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006880 | SBH | 0.237767 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007170 | RBH | 0.0 | 0.0 | 1.279961 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007020 | RBH | 0.599419 | 1.162773 | 38.389561 |
