Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006800 | OGI:08019660 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:6760767-6762581 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaacaggagggagctactcctccagactgacaagaagacagttgcagaggccttctggcGgggaatcttggatggaagggtcgatgacatggtccccgcggaaacgatgaggactccgtggcgtagtggcggccttttacctcacacgcaggggtacacacatgaggagcagcagcatgattgcgcagcgttggccgtggagccctcgcggcggagcggtgtagcagtgaggacggggcagcggggcacacgtgcgtggcctatgaccttacgcacagcagggggcacgtgagaactgagaggagcgtcggaagaagaccggaagaaggCagaaacacaagcacaaaactattgttttatgtggttttctctcatcaattgggttgatattatattggtagggccagaaagttttacaatatagaacggagggaataaaaaaaattgatagatggaaaataaattggtaaaaattagtagatgggaaaaaagtagcactaagttgataggttgggtataaaatatcgtcgcggatcacgaaatatatatcttacatttgggacaaatttaaagggcaaaatcatttatattatgggacggagagagtagttatatagctgaattttgcttctggcctgtggtgcagttgcttccaaaataataattctctccgtctaacaatatatttggagctttttttctggatattaacaatgagtatgtgaataaagagttattattgaatgagatgagtagttatgtgagaaaattaaacgagcagtagtagttgtgattggttaagataaatagattgttgtagatattcgtatattatattaaataaattttaaactatatatcattatatttctagacctaatgattaaccaaggaaaaatgcaaggatttgaaaaaatatagaagccaatgctaggcgcctaagtgaatggatatgaaacaaaaagcgagcaggctgtctatatatggacaattagttgcattaatatagtagtttaataattgcaagcatggcactacatcacaacaccaaaaagacatgccgtgatgctagaacagccattgaataaattagaaagaaaggttgtggttaattagttaacgaccaatcgagcctactagtataaattgtacctcgttgttatgaagtaattcatcctgtagtaacgaaacaagcagagagagagagagagagggagagagataaataatatacagaaatgagcaggtcgagctcgagcatggccaccgtcctcgtggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtgtgctgccaccagcggcggcgccaggggaggcgccctccgcggacgcggcagcgtttgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccaccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacgtgggatcgggaaagcatccggttgcgagatag
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| CDS seq | atgaacaggagggagctactcctccagactgacaagaagacagttgcagaggccttctggcGgggaatcttggatggaagggtcgatgacatggtccccgcggaaacgatgaggactccgtggcgtagtggcggccttttacctcacacgcaggggtacacacatgaggagcagcagcatgattgcgcagcgttggccgtggagccctcgcggcggagcggtgtagcagtcgagctcgagcatggccaccgtcctcgtggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtgtgctgccaccagcggcggcgccaggggaggcgccctccgcggacgcggcagcgtttgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccaccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacgtgggatcgggaaagcatccggttgcgagatag
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| Protein seq | MNRRELLLQTDKKTVAEAFWRGILDGRVDDMVPAETMRTPWRSGGLLPHTQGYTHEEQQHDCAALAVEPSRRSGVAVELEHGHRPRGVDGRQRRRLIPTMCGRCEGGEASGVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQLRKVQGGAGKGDPNLNACVDDFSVAAGENITREALQSLGRLATAGNGKRSKEDLENAQKWIKGVEKPYNVGSGKHPVAR |
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| Function | Uncharacterized protein Os08g0218700/LOC_Os08g12160 [UniProtKB/Swiss-Prot:Q6YUE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006800 | OsLima_08g0006800.01 | Chr08 | 6760767 | 6762581 | + | NAM | ||
| CDS seq | atgaacaggagggagctactcctccagactgacaagaagacagttgcagaggccttctggcGgggaatcttggatggaagggtcgatgacatggtccccgcggaaacgatgaggactccgtggcgtagtggcggccttttacctcacacgcaggggtacacacatgaggagcagcagcatgattgcgcagcgttggccgtggagccctcgcggcggagcggtgtagcagtcgagctcgagcatggccaccgtcctcgtggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtgtgctgccaccagcggcggcgccaggggaggcgccctccgcggacgcggcagcgtttgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccaccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacgtgggatcgggaaagcatccggttgcgagatag
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| Protein seq | MNRRELLLQTDKKTVAEAFWRGILDGRVDDMVPAETMRTPWRSGGLLPHTQGYTHEEQQHDCAALAVEPSRRSGVAVELEHGHRPRGVDGRQRRRLIPTMCGRCEGGEASGVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQLRKVQGGAGKGDPNLNACVDDFSVAAGENITREALQSLGRLATAGNGKRSKEDLENAQKWIKGVEKPYNVGSGKHPVAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0218700 | SBH | 0.0 | 0.0 | 22.053646 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12240 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0218700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007220 | SBH | 0.0 | 0.0 | 9.106144 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007290 | SBH | 0.0 | 0.0 | 18.632296 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007390 | SBH | 0.0 | 0.0 | 38.105770 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007350 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007180 | SBH | 0.195124 | 0.0 | 27.977495 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0111300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007120 | SBH | 0.0 | 0.0 | 6.765213 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0110900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006920 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007230 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006830 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007000 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006840 | SBH | 0.0 | 0.0 | 89.929199 |
