Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006290 | OGI:08015930 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:5670726-5673294 | ||||||||
| Gene Symbol | OsFbox428, Os_F0440 | ||||||||||
| DNA seq | atggcggaaatgggcgccgccgtcgccgccgcggcggtgccggctattccggaggacgtcgtcatcgagatcctcgcgcgggtgacggacccgacgaccctcttccgctgcgccgcggcgtgcaagcggtggctccgcctcatcgccgaccaggccttcctcctccgccgctggccgccgggcacccgggtgccctccctcctcggcttcttcgcgcagcgccaccagatccaggccaacgcgaggcggaagctcaccaagctcttcccgacccgcgcgctgccgctcatcgcagcgccgagcagggccacgggtgacccacccgtcggcaacgggcggcggcggctgttcctcaccgacttcgtccgcaacgccgccggcgccggcctcttcgaccaggccaagccgttggcggcgcgcagcgggctcctcctcgtgcgcgtcctcccctcgccctcgccggcgccacagaacgcgctccacctctgcgtctgcaacctggtcaccggcaaccacgacgtcctgccccctctacccatggattgcttcgagaaagacggcgccagaggctacgccatcctcacagccgccgaccaccgcgtcagccgcaacccatcaggtggctacaacaccttcttccaagtgctcctcctcagcatccaccatggcaaccatcaggtatacctccacagattctcctcagccgctgccagcgccgcggcggcggcggccatttttgagatatcctggagcacgcccagaaattgctctgaacaaatccggggctatgtctggggtccctctggaaacatagttgcagctgtcagccatggcgccgcacactggctcttcagttggggagaagaaagcctctacacccttgatgtgagcattgacacagacaatatcggcgcaaccaatattccaattgatcctccccccactgtcttccaccaatcttggttgtacgtaagcgtcgacgagaggctttcgcttctttatctttgcgacaacaaacttcatatttggactaagctagaaacacaggagagtggtcgtttgctctggaattgcacacaatcgatttgtGtTggcgtgaagatGgggttgtttggaacggagtcgctttccactgtgtgcataggggaggagagtggcaccatgctcaccctctacctttcggaccctaacagcgcatatgtgctcgacctcccatctgggtcgattaccagtgtggacgattggaaacgctggttcaactacatgacggctgtgtcctttgagatcaactggcattcattcttcttgactcggctaggggacttctggtacgcatagatgaccagactattgtaatttgcacTtttaatgtgtttaaacgcatgttttgctgtgagattatgactgaaccttgtagaagttgacatattcagctggcaaaatgaatcccatctgatctcacttactaatagagtagaatagtagatcttatgcatcttcaggtaagctgtgcatttaagggagtcctttattctgcaaatactgaaccatgttcttttggcgtttattatctaaatgccatgattggaataaagaagtgtccatgtggtttctatttttgttgcccaatctgtatcaattgtagctgtagttggtgggtttgaaagattgtttcagaattgttccacggtcatcttcacaaatgatatggcaattacatggtttcttcagatatattcctcctgtaaattagttcttcgtatattaaaagagcctcatttctatttcctgcatgtattttactaaagtcgtaacttgaatcatgattcatgaatatgggacagtttatatgttcaattgcactttgctataactacctgggcaactgccatgagctacgtcctacagttcctgcatatttaatacaatcaaattttcttgttactgattctgtggtctagtcaaatcatctatcagaagctattatttagtgatattagtacacaccaatacatcactcactagtactaaaacagatgctaatactttctattagattgaactttcaatgctattcttcaaggactaaaattgcaatacaacatatctgtttgagatatgtacctgggtaacggttgttggcAaaaatatctctgtctggaaagacacttggtttgagaactgccctctaaaaatttctttccctaatctgtttgagatatgcatccaacaagattattttgttagatttgtttgaggtcagataccccttgggtggagcaggatcccccatgattttgatggctttttcttgatgttaggaaaaacaagttcaaaaacctctaaagtgggtttcatgtttttggctgctttagtttggtccctttggtcaattcgaaacgacatgatccttaggaataaaatggtttcatcaccactaatgactccttttcgtttgattggcttgctactgcagtggaagattctgctaaagctggacgaagtacctaccctggaacaaacaactaaggcgattcaggaagcaattgatgccctgcgaccttcatga
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| CDS seq | atggcggaaatgggcgccgccgtcgccgccgcggcggtgccggctattccggaggacgtcgtcatcgagatcctcgcgcgggtgacggacccgacgaccctcttccgctgcgccgcggcgtgcaagcggtggctccgcctcatcgccgaccaggccttcctcctccgccgctggccgccgggcacccgggtgccctccctcctcggcttcttcgcgcagcgccaccagatccaggccaacgcgaggcggaagctcaccaagctcttcccgacccgcgcgctgccgctcatcgcagcgccgagcagggccacgggtgacccacccgtcggcaacgggcggcggcggctgttcctcaccgacttcgtccgcaacgccgccggcgccggcctcttcgaccaggccaagccgttggcggcgcgcagcgggctcctcctcgtgcgcgtcctcccctcgccctcgccggcgccacagaacgcgctccacctctgcgtctgcaacctggtcaccggcaaccacgacgtcctgccccctctacccatggattgcttcgagaaagacggcgccagaggctacgccatcctcacagccgccgaccaccgcgtcagccgcaacccatcaggtggctacaacaccttcttccaagtgctcctcctcagcatccaccatggcaaccatcaggtatacctccacagattctcctcagccgctgccagcgccgcggcggcggcggccatttttgagatatcctggagcacgcccagaaattgctctgaacaaatccggggctatgtctggggtccctctggaaacatagttgcagctgtcagccatggcgccgcacactggctcttcagttggggagaagaaagcctctacacccttgatgtgagcattgacacagacaatatcggcgcaaccaatattccaattgatcctccccccactgtcttccaccaatcttggttgtacgtaagcgtcgacgagaggctttcgcttctttatctttgcgacaacaaacttcatatttggactaagctagaaacacaggagagtggtcgtttgctctggaattgcacacaatcgatttgtGtTggcgtgaagatGgggttgtttggaacggagtcgctttccactgtgtgcataggggaggagagtggcaccatgctcaccctctacctttcggaccctaacagcgcatatgtgctcgacctcccatctgggtcgattaccagtgtggacgattggaaacgctggttcaactacatgacggctgtgtcctttgagatcaactggcattcattcttcttgactcggctaggggacttctgttggtggtggaagattctgctaaagctggacgaagtacctaccctggaacaaacaactaaggcgattcaggaagcaattgatgccctgcgaccttcatga
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| Protein seq | MAEMGAAVAAAAVPAIPEDVVIEILARVTDPTTLFRCAAACKRWLRLIADQAFLLRRWPPGTRVPSLLGFFAQRHQIQANARRKLTKLFPTRALPLIAAPSRATGDPPVGNGRRRLFLTDFVRNAAGAGLFDQAKPLAARSGLLLVRVLPSPSPAPQNALHLCVCNLVTGNHDVLPPLPMDCFEKDGARGYAILTAADHRVSRNPSGGYNTFFQVLLLSIHHGNHQVYLHRFSSAAASAAAAAAIFEISWSTPRNCSEQIRGYVWGPSGNIVAAVSHGAAHWLFSWGEESLYTLDVSIDTDNIGATNIPIDPPPTVFHQSWLYVSVDERLSLLYLCDNKLHIWTKLETQESGRLLWNCTQSICVGVKMGLFGTESLSTVCIGEESGTMLTLYLSDPNSAYVLDLPSGSITSVDDWKRWFNYMTAVSFEINWHSFFLTRLGDFCWWWKILLKLDEVPTLEQTTKAIQEAIDALRPS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006290 | OsLima_08g0006290.01 | Chr08 | 5670726 | 5673294 | + | NAM | ||
| CDS seq | atggcggaaatgggcgccgccgtcgccgccgcggcggtgccggctattccggaggacgtcgtcatcgagatcctcgcgcgggtgacggacccgacgaccctcttccgctgcgccgcggcgtgcaagcggtggctccgcctcatcgccgaccaggccttcctcctccgccgctggccgccgggcacccgggtgccctccctcctcggcttcttcgcgcagcgccaccagatccaggccaacgcgaggcggaagctcaccaagctcttcccgacccgcgcgctgccgctcatcgcagcgccgagcagggccacgggtgacccacccgtcggcaacgggcggcggcggctgttcctcaccgacttcgtccgcaacgccgccggcgccggcctcttcgaccaggccaagccgttggcggcgcgcagcgggctcctcctcgtgcgcgtcctcccctcgccctcgccggcgccacagaacgcgctccacctctgcgtctgcaacctggtcaccggcaaccacgacgtcctgccccctctacccatggattgcttcgagaaagacggcgccagaggctacgccatcctcacagccgccgaccaccgcgtcagccgcaacccatcaggtggctacaacaccttcttccaagtgctcctcctcagcatccaccatggcaaccatcaggtatacctccacagattctcctcagccgctgccagcgccgcggcggcggcggccatttttgagatatcctggagcacgcccagaaattgctctgaacaaatccggggctatgtctggggtccctctggaaacatagttgcagctgtcagccatggcgccgcacactggctcttcagttggggagaagaaagcctctacacccttgatgtgagcattgacacagacaatatcggcgcaaccaatattccaattgatcctccccccactgtcttccaccaatcttggttgtacgtaagcgtcgacgagaggctttcgcttctttatctttgcgacaacaaacttcatatttggactaagctagaaacacaggagagtggtcgtttgctctggaattgcacacaatcgatttgtGtTggcgtgaagatGgggttgtttggaacggagtcgctttccactgtgtgcataggggaggagagtggcaccatgctcaccctctacctttcggaccctaacagcgcatatgtgctcgacctcccatctgggtcgattaccagtgtggacgattggaaacgctggttcaactacatgacggctgtgtcctttgagatcaactggcattcattcttcttgactcggctaggggacttctgttggtggtggaagattctgctaaagctggacgaagtacctaccctggaacaaacaactaaggcgattcaggaagcaattgatgccctgcgaccttcatga
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| Protein seq | MAEMGAAVAAAAVPAIPEDVVIEILARVTDPTTLFRCAAACKRWLRLIADQAFLLRRWPPGTRVPSLLGFFAQRHQIQANARRKLTKLFPTRALPLIAAPSRATGDPPVGNGRRRLFLTDFVRNAAGAGLFDQAKPLAARSGLLLVRVLPSPSPAPQNALHLCVCNLVTGNHDVLPPLPMDCFEKDGARGYAILTAADHRVSRNPSGGYNTFFQVLLLSIHHGNHQVYLHRFSSAAASAAAAAAIFEISWSTPRNCSEQIRGYVWGPSGNIVAAVSHGAAHWLFSWGEESLYTLDVSIDTDNIGATNIPIDPPPTVFHQSWLYVSVDERLSLLYLCDNKLHIWTKLETQESGRLLWNCTQSICVGVKMGLFGTESLSTVCIGEESGTMLTLYLSDPNSAYVLDLPSGSITSVDDWKRWFNYMTAVSFEINWHSFFLTRLGDFCWWWKILLKLDEVPTLEQTTKAIQEAIDALRPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0203800 | RBH | 0.139367 | 0.860397 | 1.635253 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10340 | RBH | 0.081869 | 0.502682 | 0.371731 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0203800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006660 | RBH | 0.000000 | 0.000000 | 1.435293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006610 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006730 | RBH | 0.0 | 0.000000 | 0.399151 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006620 | RBH | 0.0 | 1.956430 | 1.179485 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0091600 | RBH | 0.864509 | 3.836514 | 4.6859915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006340 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0094300 | RBH | 0.0794365 | 0.3897815 | 1.9501725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006370 | RBH | 0.958845 | 3.567361 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006630 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006390 | RBH | 0.133408 | 0.783426 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006450 | RBH | 0.0 | 0.488428 | 0.778156 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006300 | RBH | 0.0 | 0.0 | 2.178731 |
