Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0005880 | OGI:08014560 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:5110445-5113946 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaccatccatacaccgacagtgccaatccacaagccctggagaaggctagcaccggaccgaccgctgtcaagcgtgaccgaccgccgtctgttgtcgtccagctggatccggccgttgtggagtcggacctcgcccaccgctgctccaccaggcaccatcgtcgtcgtcgccaccagcaaaccccaCcgcctgtcgcctccccgccagatccaggcgtggatctggcggcacttccaccgccgccgctccctctcccgtgcgccaacgccactccctctgccctgccggtgatgcctcctctgcccaacgccgcgagttgccgccttggcctccgcccgctgctgaaaacggcgtcgccgacctctgccctggagtccgcccgcgtcggaacaggaggagcgggagctgcgagccccgccaccgccgtccttggtgatgggtgaggcaagaggcgagggtgatgggttgcagcggcaggcccggcttagagctacgacgaggagtgcgacggcctaggacccaacgtaagtagggtcctaggatcaggtaagtaagtacgagttggtatgccgtatatgtgcgtttacctatagaaactacatacgtatactgcgagcaaatacgtggtgattgtttgtggtggcggagtgaccgtgtccaactgctcacgtcattgctgcctccgtggaaatctgatctcacaaccttcagtttttaggtactattcttgagtgagttcgtattcaagtagctaaagagtatgtctgttaactatctcatatgctcggtgagaggccaaattaccacaagaacatactatgtttaggccctacgacaaggattggctgtgtgctacgttcagaagaatgcgatggataatattaatctcattacattttttaaagattttgcataaaaaatgtttaaaggagtgtattttttcgtaagaagccacatggatatttgtcatctcttcatttgtgaggtattattaatggagtcgctagacagttggagtttgacctttattcaaggtattcatattagctctattttgatgttctttggttatatacagaacatgctcaatgtttatttcatcagaagatatatagtttaaaaatatataaatagaaaaaacatattaagggtctacaccaccaagttcgtcttaggacccttgaaattgtagagccggccctgtgcggcggcggcttgggttgtcaccgccggtgccgccctcacggggaggcgacgcggagaaaaagtgtactgcctccgttctaaaacgagttcatttctctatacgaatatgaacagtcatttgtccggattcacaggcaaaagtgaaatactactaattaaagatttaattaattcactgggatgtgcaggactagctgaaatagctagcggtccgatcctgaatcaacgatcagatttctacctccctatgcatgccagatgattatttccctatttcccgtgccacattgccagtagtggcccagaacgcgagaggtcatcgcacgcgacgcgccacgccagaacccgcttcgtctctgctgccgtgatgatgcatggtttattttttgcattaattaacagggagcgtatcctatgcaaacatgccttcgtgtgtacacatcatacacaccaactaaaaattatcacaaaaaattctaaaaaaattcatacgtgtacttccattaatattacatctacgtgcaaagtcatatcttcaaatttattctacatagagagtaaaaaaaagataaaattctgacaaaattacaattttaaaactgtcagattttttttacggctaaaatataataaatttgatgttaagattttaaccctaggtgtaatactattgaaagtacatgtatggatttttctagattttttggtgataaTttttacttcgtgtgcacatgtgtacacgtgagagcttgtgtgcatagaactagaactattttgcctaattaacaacggagaactatcactggcagccggggaaaacgaagggattcgtcccatattttcccctttaaaatgtcgtctatcttacttcaagaagtactacatcccattgttcatggcgcctccgattcaagagcccaagcaagcttagcagcaaggtgtatatatatgatcaatcgaatcaatcaactagctttctctcttggccataatctcatttctcaaacctgatcaatggcaagagatcatagcccttctttccggtggtgttgccgccgtgcaatggacgcgctgccggtgccggagacgagggactggtcttttttttttttttttggaaacttaaacatatatattagagcaacagatcaagggggcaagccccgtacatcgccaacagagatggcttagggtaaagaaccaacaagatgcacatcagataaaactggactaagagtacaaacaacctcttgaaactaggcagcgtagaaggcgcgaatcgacagggagctgcggcgaagccgcgacgattagaaccttgggtctcctttgacatgcagaccgcttgacgaaccggtaatccccttcggacgccttcacagagtctgcacaaattggagatttgctgttgagccgtagattttggtgtaagcttcaccggacttaaccaaacttcaccacggagttcgccattaaatctgaggagcatgagctcaacccgaatggcccacccagcgtggatacaactgcccagaaacgaagagggagaaggactccagatccagccaccctgaagcagtgaagagcacaaccattgacgaatgaactgttctctagagggaacgacgcacaacgttgggaaagagcggactagcagaaggtgaagcagaagcaccaactggggacccgaggagggaggaggtcggagaagggcttcggccagctcggtggcagggacaacgacatcacctactccggcgacgacgccatcatcccggacactagcaagaggcacaaagcaccaccaccatcccagaccacagccggcacagagggaaagagaccacaagcaataaaccttctcgtagagcaccaacagcacctccatgcgcagcagcaatgaccacggcggcggcaaaaccagacaccgccccatcacctcaagcttcaaatccagcatatcctccacttccactagctgcaagacaccaacaacgacgacgacgagaccacgccgctgccaggaaacatccacagctcgccatcgaccaacgccaacgccatcaataactccggcaaccatagaacctcaccggcaaaagagacacaggacagaccctaactacaggacaaacctgacacaatactactagggggaggtggccggacccctcctccaaccctcgccggcggcaagccgccggaatcgaaggggaagaggggccggaGggggagagattggaaagctacagtagcaagaggaggggaaaggaggggactggtcggagctgccg
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| CDS seq | atggttgccggagttattgatggcgttggcgttggtcgatggcgagctgtggatgtttcctggcagcggcgtggtctcgtcgtcgtcgttgttggtgtcttgcagctagtggaagtggaggatatgctggatttgaagcttgaggtgatggggcggtgtctggttttgccgccgccgtggtcattgctgctgcgcatggaggtgctgttggtgctctacgagaaggtttattgcttgtggtctctttccctctgtgccggctgtggtctgggatggtggtggtgctttgtgcctcttgctagtgtccgggatgatggcgtcgtcgccggagtagactctgtgaaggcgtccgaaggggattaccggttcgtcaagcggtctgcatgtcaaaggagacccaaggttctaatcgtcgcggcttcgccgcagctccctgtcgattcgcgccttctacgctgcctagtttcaagagctcccgctcctcctgttccgacgcgggcggactccagggcagaggtcggcgacgccgttttcagcagcgggcggaggccaaggcggcaactcgcggcgttgggcagaggaggcatcaccggcagggcagagggagtggcgttggcgcacgggagagggagcggcggcggtggaagtgccgccagatccacgcctggatctggcggggaggcgacaggcgGtggggtttgctggtggcgacgacgacgatggtgcctggtggagcagcggtgggcgaggtccgactccacaacggccggatccagctggacgacaacagacggcggtcggtcacgcttgacagcggtcggtccggtgctagccttctccagggcttgtggattggcactgtcggtgtatggatggtga
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| Protein seq | MVAGVIDGVGVGRWRAVDVSWQRRGLVVVVVGVLQLVEVEDMLDLKLEVMGRCLVLPPPWSLLLRMEVLLVLYEKVYCLWSLSLCAGCGLGWWWCFVPLASVRDDGVVAGVDSVKASEGDYRFVKRSACQRRPKVLIVAASPQLPVDSRLLRCLVSRAPAPPVPTRADSRAEVGDAVFSSGRRPRRQLAALGRGGITGRAEGVALAHGRGSGGGGSAARSTPGSGGEATGGGVCWWRRRRWCLVEQRWARSDSTTAGSSWTTTDGGRSRLTAVGPVLAFSRACGLALSVYGW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0005880 | OsLima_08g0005880.01 | Chr08 | 5110445 | 5113735 | - | NAM | ||
| CDS seq | atggttgccggagttattgatggcgttggcgttggtcgatggcgagctgtggatgtttcctggcagcggcgtggtctcgtcgtcgtcgttgttggtgtcttgcagctagtggaagtggaggatatgctggatttgaagcttgaggtgatggggcggtgtctggttttgccgccgccgtggtcattgctgctgcgcatggaggtgctgttggtgctctacgagaaggtttattgcttgtggtctctttccctctgtgccggctgtggtctgggatggtggtggtgctttgtgcctcttgctagtgtccgggatgatggcgtcgtcgccggagtagactctgtgaaggcgtccgaaggggattaccggttcgtcaagcggtctgcatgtcaaaggagacccaaggttctaatcgtcgcggcttcgccgcagctccctgtcgattcgcgccttctacgctgcctagtttcaagagctcccgctcctcctgttccgacgcgggcggactccagggcagaggtcggcgacgccgttttcagcagcgggcggaggccaaggcggcaactcgcggcgttgggcagaggaggcatcaccggcagggcagagggagtggcgttggcgcacgggagagggagcggcggcggtggaagtgccgccagatccacgcctggatctggcggggaggcgacaggcgGtggggtttgctggtggcgacgacgacgatggtgcctggtggagcagcggtgggcgaggtccgactccacaacggccggatccagctggacgacaacagacggcggtcggtcacgcttgacagcggtcggtccggtgctagccttctccagggcttgtggattggcactgtcggtgtatggatggtga
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| Protein seq | MVAGVIDGVGVGRWRAVDVSWQRRGLVVVVVGVLQLVEVEDMLDLKLEVMGRCLVLPPPWSLLLRMEVLLVLYEKVYCLWSLSLCAGCGLGWWWCFVPLASVRDDGVVAGVDSVKASEGDYRFVKRSACQRRPKVLIVAASPQLPVDSRLLRCLVSRAPAPPVPTRADSRAEVGDAVFSSGRRPRRQLAALGRGGITGRAEGVALAHGRGSGGGGSAARSTPGSGGEATGGGVCWWRRRRWCLVEQRWARSDSTTAGSSWTTTDGGRSRLTAVGPVLAFSRACGLALSVYGW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0005880 | OsLima_08g0005880.02 | Chr08 | 5112769 | 5113946 | - | IsoSeq | ||
| CDS seq | gcagctccgaccagtcccctcctttcccctcctcttgctactgtagctttccaatctctccccCtccggcccctcttccccttcgattccggcggcttgccgccggcgagggttggaggaggggtccggccacctccccctagtagtattgtgtcaggtttgtcctgt |
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| Protein seq | AAPTSPLLSPPLATVAFQSLPLRPLFPFDSGGLPPARVGGGVRPPPPSSIVSGLSC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.551947 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0195400 | RBH | 0.209027 | 0.214363 | 8.676631 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09610 | RBH | 0.138509 | 0.141274 | 2.188563 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0195400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006180 | RBH | 0.161819 | 47.982960 | 11.301495 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006180 | RBH | 0.533051 | 3.398415 | 10.609623 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006250 | RBH | 0.692283 | 15.080943 | 13.838086 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0084100 | RBH | 15.1889715 | 54.7582265 | 31.684675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005830 | RBH | 0.083338 | 1.197645 | 3.658803 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0086800 | RBH | 10.0665455 | 34.980192 | 82.625721 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005950 | RBH | 0.0 | 10.919333 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005790 | RBH | 0.0 | 31.589426 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006100 | RBH | 0.0 | 1.590236 | 1.346594 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005900 | RBH | 0.0 | 9.897137 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005900 | RBH | 0.0 | 1.488581 | 4.892624 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005790 | RBH | 0.061584 | 18.092171 | 12.999603 |
