Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0005310 | OGI:08000240 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:4582250-4583875 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagaactctacaaacccacggcctaaagatatccgtgagattgaacttctattattagagtaagaaacatggctgtctttcctttcaatcgatttgatatctttcataatcttatctaagtcttttacaatgttatctacagtggtgctaaaatcagagtgacgttatgggggcagttagctcattctttgaatgaagatgtgattggcaaccacactgttgtggttgttacatcaacaacagttcaagaatttaatggtaattccaatgttttctatagtacttttagcatatgtacaaaggtaacgcgtaattttgtatttaataggtctgtctttgaggtcaagcagtgccacaagattatacagatataaatatacctgagacctggaaaattatttcaaggtttgtttcctttatttacctacttatttcttgattgaatgaaaactttaaccccttattactttccaacattaaaatgcctgctatattattgctatctaatttataggcactcggatgaacaaaatttgccaaaactcatggaggtggataaaagtacacaaggtacattggaagaacaaatgttctataacaggaaaaccttgcaagagattacaaacatgggacatgatgacacaaaaagtcaggtaagaattcactcttcttattagatgcagtatttgcgctaaatccataaatctgaactgtactgtaacatcattttattaatgttatgttccacccaaaaaactaatacaatgttttttttccTTtttTTAACAGGATTTCATTTGTACGACCAAAGCTACGATTGATCATTTACAAGATGTCACATGGTGGTACATGTCATGCAATGATTGCAACAAAAAAGTTGTAAAAAAAATCGACAAGTACTATTGTGAAAAGTGCAAGATGTATCCAGAAAATACTAAACCTCGGTAAGCAACTAAGCATACCCAATTGATTTCAACAACATTATTTTGCACTTCTCATATTGAACTAACATCACTGCTACATTAGGTATTTTATTCGACTCTGTATAAGTGATCATACGACTACTGCAAATTGCACATTATTTGATGATGTGGCACAAAGAATGTTGAATACATCTATCTCAAGCTTGCTCAATTCACTGGATGGGAGATGTGAAGAAGTTCCTACAATTATACAACAATTATGTGGAAGGACATTTATATTTCAACTCAAGCTCAATATTGAAAATTTAACTCAAGGCAAGTCAAACTATATAGTAAGAAGAACATTTGTGCCTGATGATAAACTTGAAATGCAACACTTGGATGATAAAGCTAAGGTCAGTGTGCATTTCCTCTGTATAAAATCAAATATTAATGATTTTGTTTCTATCACTATATTCTGATTTTGTATTATTTTTTATAGGATTTGCTAAACAATGAAAAGGATAAATTGAACTATCCACCTAACAGAAGAGAATCCAGCTTATATGTGCATATCAAACAAGAACCAGAAGATAGTGATGGAGATAAAGATGAGACAACTTCATCGAGAAAAATTCAACGTGGTAGTCAAACAACAAAGGAATACATTACCATTGAAGACGACACactggagaagaaaacgactcagaagaagacctag
More
|
||||||||||
| CDS seq | atgaagaactctacaaacccacggcctaaagatatccgtgagattgaacttctattattagatggtgctaaaatcagagtgacgttatgggggcagttagctcattctttgaatgaagatgtgattggcaaccacactgttgtggttgttacatcaacaacagttcaagaatttaatgtgccacaagattatacagatataaatatacctgagacctggaaaattatttcaaggcactcggatgaacaaaatttgccaaaactcatggaggtggataaaagtacacaaggtacattggaagaacaaatgttctataacaggaaaaccttgcaagagattacaaacatgggacatgatgacacaaaaagtcagGATTTCATTTGTACGACCAAAGCTACGATTGATCATTTACAAGATGTCACATGGTGGTACATGTCATGCAATGATTGCAACAAAAAAGTTGTAAAAAAAATCGACAAGTACTATTGTGAAAAGTGCAAGATGTATCCAGAAAATACTAAACCTCGTGATCATACGACTACTGCAAATTGCACATTATTTGATGATGTGGCACAAAGAATGTTGAATACATCTATCTCAAGCTTGCTCAATTCACTGGATGGGAGATGTGAAGAAGTTCCTACAATTATACAACAATTATGTGGAAGGACATTTATATTTCAACTCAAGCTCAATATTGAAAATTTAACTCAAGGCAAGTCAAACTATATAGTAAGAAGAACATTTGTGCCTGATGATAAACTTGAAATGCAACACTTGGATGATAAAGCTAAGGATTTGCTAAACAATGAAAAGGATAAATTGAACTATCCACCTAACAGAAGAGAATCCAGCTTATATGTGCATATCAAACAAGAACCAGAAGATAGTGATGGAGATAAAGATGAGACAACTTCATCGAGAAAAATTCAACGTGGTAGTCAAACAACAAAGGAATACATTACCATTGAAGACGACACactggagaagaaaacgactcagaagaagacctag
More
|
||||||||||
| Protein seq | MKNSTNPRPKDIREIELLLLDGAKIRVTLWGQLAHSLNEDVIGNHTVVVVTSTTVQEFNVPQDYTDINIPETWKIISRHSDEQNLPKLMEVDKSTQGTLEEQMFYNRKTLQEITNMGHDDTKSQDFICTTKATIDHLQDVTWWYMSCNDCNKKVVKKIDKYYCEKCKMYPENTKPRDHTTTANCTLFDDVAQRMLNTSISSLLNSLDGRCEEVPTIIQQLCGRTFIFQLKLNIENLTQGKSNYIVRRTFVPDDKLEMQHLDDKAKDLLNNEKDKLNYPPNRRESSLYVHIKQEPEDSDGDKDETTSSRKIQRGSQTTKEYITIEDDTLEKKTTQKKT |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0005310 | OsLima_08g0005310.01 | Chr08 | 4582250 | 4583875 | + | NAM | ||
| CDS seq | atgaagaactctacaaacccacggcctaaagatatccgtgagattgaacttctattattagatggtgctaaaatcagagtgacgttatgggggcagttagctcattctttgaatgaagatgtgattggcaaccacactgttgtggttgttacatcaacaacagttcaagaatttaatgtgccacaagattatacagatataaatatacctgagacctggaaaattatttcaaggcactcggatgaacaaaatttgccaaaactcatggaggtggataaaagtacacaaggtacattggaagaacaaatgttctataacaggaaaaccttgcaagagattacaaacatgggacatgatgacacaaaaagtcagGATTTCATTTGTACGACCAAAGCTACGATTGATCATTTACAAGATGTCACATGGTGGTACATGTCATGCAATGATTGCAACAAAAAAGTTGTAAAAAAAATCGACAAGTACTATTGTGAAAAGTGCAAGATGTATCCAGAAAATACTAAACCTCGTGATCATACGACTACTGCAAATTGCACATTATTTGATGATGTGGCACAAAGAATGTTGAATACATCTATCTCAAGCTTGCTCAATTCACTGGATGGGAGATGTGAAGAAGTTCCTACAATTATACAACAATTATGTGGAAGGACATTTATATTTCAACTCAAGCTCAATATTGAAAATTTAACTCAAGGCAAGTCAAACTATATAGTAAGAAGAACATTTGTGCCTGATGATAAACTTGAAATGCAACACTTGGATGATAAAGCTAAGGATTTGCTAAACAATGAAAAGGATAAATTGAACTATCCACCTAACAGAAGAGAATCCAGCTTATATGTGCATATCAAACAAGAACCAGAAGATAGTGATGGAGATAAAGATGAGACAACTTCATCGAGAAAAATTCAACGTGGTAGTCAAACAACAAAGGAATACATTACCATTGAAGACGACACactggagaagaaaacgactcagaagaagacctag
More
|
|||||||
| Protein seq | MKNSTNPRPKDIREIELLLLDGAKIRVTLWGQLAHSLNEDVIGNHTVVVVTSTTVQEFNVPQDYTDINIPETWKIISRHSDEQNLPKLMEVDKSTQGTLEEQMFYNRKTLQEITNMGHDDTKSQDFICTTKATIDHLQDVTWWYMSCNDCNKKVVKKIDKYYCEKCKMYPENTKPRDHTTTANCTLFDDVAQRMLNTSISSLLNSLDGRCEEVPTIIQQLCGRTFIFQLKLNIENLTQGKSNYIVRRTFVPDDKLEMQHLDDKAKDLLNNEKDKLNYPPNRRESSLYVHIKQEPEDSDGDKDETTSSRKIQRGSQTTKEYITIEDDTLEKKTTQKKT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.160120 | 0.103903 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0001500 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0001510 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028210 | SBH | 0.069960 | 0.010855 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005420 | SBH | 6.027192 | 10.852235 | 16.666893 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0397000 | SBH | 0.2878415 | 0.861447 | 0.4012 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000180 | RBH | 0.192999 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004990 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004660 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004590 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004540 | SBH | 0.0 | 0.0 | 0.000000 |
