Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0005181 | OGI:08003760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:4405193-4406818 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagctgttacaaacatgggtttgaagtgtccccaggaagacgcaaaatggtggcacaaaatttacttcaggcttgaagttgttctgcattgcaagaaggcatttccatctgaagagttgttatctgcagaagactataaggtcgttgagtctatctgcaagattctgagggctttttatcgtgctattgaagtaatctctggtcctgtttgcccaacagcaaatgtgtacttcaatgaattatggaaagttagaacaactttgcaagaagaagcatctactgatcacactgaagttgctagcatggtgagggagatgcaggaagcattccatgaatattgggaaaattcatacctatggctgtcaatacctatagttcttgatcccagattcaaaattacttttattgagttccgtcttaaacgagctttcggtgctgaagcagcaaagtatgtagctgctgtacgtgaaataatcagggagctgtttcatgaatattgcggccctgtggataaaggtgttcacacgtcaaacaatgaagctcgtgatgttgaaatggatggatttgacagtgattcattggaggattgggatcagcatcttagtgcacaatcaaggagccaacggttgtcagagcttgacaattatctcgaggatggccttgttccaaggaaagatgattttgatattctgaactggtggatgattcattctacaaagtatccaactctttcagttatggcacaggatgtcttggcaatgccatcatctgctcttcattgcaaggccgccttcagcagtgagggtccagtaattcataagcaatggagcactttgaacatcaagacaattgaggcgcttgtgtgtacccaggattggattagatagaatggtaaattctgcagtcctgagttctgtttgttttccttagctacttatgtgagttcgtttaaataagcatgtgcttgcttcatggttcgtactttacttttgcttcttacttctcgagaaagaattcgacaaacatcttttaggaatgcaaaattaaagtttgtcacagcatcatctcgtagtaggtaggtacttcaaagttcaaaccaatgtagtggtagatagataggttgcaatctgatggatgtgaggcatactgttagcttatgttgtatgtagacatgcttggatcatgactttgcttctaggttggatcgaataaaatcattctgctatattcaaatactgctcagctcatcgaattgctctctttttatctctgtaatgttctaacattagacgttcctgtcaacaattttgcaggctgcatgctgtacaagacatcttgctgctgaagattttcacaaagtacatactcatggtacttctaacctaggaatctaggacactgttggaaagagtttactgctcattcggcttactgtattagacatctagcagatgatagtatgtcttaatatttctgcaattcttctccaaatgtgtatagaactagtcgttcacccgtttgtcatggaatgtaccaaatgtacacctctgggtgttctgatgtatcgtacaatgttatttattgtatcggcatttttaggattataacacagatgtgaatggtagt
More
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| CDS seq | atgaatattgcggccctgtggataaaggtgttcacacgtcaaacaatgaagctcgtgatgttgaaatggatggatttgacagtgattcattggaggattgggatcagcatcttagtgcacaatcaaggagccaacggttgtcagagcttgacaattatctcgaggatggccttgttccaaggaaagatgattttgata |
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| Protein seq | MNIAALWIKVFTRQTMKLVMLKWMDLTVIHWRIGISILVHNQGANGCQSLTIISRMALFQGKMILI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0005181 | OsLima_08g0005181.01 | Chr08 | 4405193 | 4406818 | + | IsoSeq | ||
| CDS seq | atgaatattgcggccctgtggataaaggtgttcacacgtcaaacaatgaagctcgtgatgttgaaatggatggatttgacagtgattcattggaggattgggatcagcatcttagtgcacaatcaaggagccaacggttgtcagagcttgacaattatctcgaggatggccttgttccaaggaaagatgattttgata |
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| Protein seq | MNIAALWIKVFTRQTMKLVMLKWMDLTVIHWRIGISILVHNQGANGCQSLTIISRMALFQGKMILI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.536107 | 0.363344 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005210 | RBH | 6.571144 | 5.481733 | 11.848014 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005162 | RBH | 0.512023 | 3.553693 | 1.127776 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
