Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0004910 | OGI:08011380 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:4171031-4173582 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatctgcttgtgggcgtctctacgggggtgacgggacccctcctgtccaagctctcaatgctgctggaccaagagtacggcaagctcaaaggtgtgcacAaacatatcaagtccttgagagatgagctgaccatcatgaatgccacacttcagatgattgcaaattctgaggagctcaaccctcaaatgaaagattggagggacaaggtacgcgagcttgcctatgacatggaggattgcatcgatgaatttattacttttgttgaccatgaacatgatggcctgatggcctccaagggattctttcacaagctgaagaaagtaaaagctcgctacaagattgctagtcagattaaagaactcaagacctgtgctgttgaggtaagcaaaaggcaaatgaggtataatattgtccaatcaacacctagctccagtacatcttctattgacccctgactaccagcgctttacgaagaggttgatagacttgtggatatcgatggtcctaagaagcatatcattgagtgcttaaccaagtttaccgagggttcttctacgcagcttaaagtggtctcgattgttggttgtggtggtcttggtaagactactcttgcaaaacaggtctaccaaaccattaaaagccaatcttcatgttcaacttttgtgtcagtttctcgaaatcctaatatgaaaaagatcttaaggaacattgccgaaggagtggggatcattggttacacaacagatgatgatatcgagcaagtgatcgacaaattcagaaaacacctccaatgtaaaaggtatgtcacctatattaatgaaattacacttttagctagactgaaagttgccagtaTtttcaacaactgtttcttggacttcctgtaggtggcatttcaatggtatatgacaatctatatatacccatactaattggacacttcgatagatttccaccgttagcgtagaaaaacaaagatgcagcaacccatgaattgcaggaccaaattacaatggcttagattaaaagaaggatacatgacaagcAaaacctgctaacaacaaatttatatttcaaaaataaattgacactttagagtacaacctggtgaattattatttccaaattttggaattattagttcaagaaaataccaaattgatgctccatgatgagcacaacTtgataattattcattccagaattatgaatatttaatttaccaaaacagtaaattgaaagggtatgccaatctgaatcttggaattcttaaatctagaaaacagtatctttttttaaggatagaaaacattaaattgatttgttttgaatttgggaatcgatctttccaaagaaaaggaaaaacatttgtaaaagtattctcaattagttattacaaattatctatatgaatttctcaaagtgtatgccaaggggatggtgtagctaaaggctcagatctagaaataagtttccgagggtttatttttaaactttattaaaagagttcaagaacaaaatacaatttcatcacatacctatctgtatacatatcaccttccacgacacactcagttctaatattacaggttataagcattaaatacagtgcaatcttgtgaaaatgtgttacaggtacttagttgtGATTGATGATGTATGGGATACAGAAGCATGGAAAGTTATCAGGCTTGCTTTGTTCGATAATAGAAGTGGCAGCAGAATCGTAGTGACCACACGAAATGCTTCAGTTGCATCAAATTGCTCAAGTGATGGTGGTTATGTTTATCACATGGAGCCTCTTTGCTTTGCTGACTCCAAAAGGCTGTTTTGCAAAAGGGCATTTGGCTTAGAGGAACTGTGTTATCCTCGTCTGAAAGAAGTTATGTATGGGATATTGGAAAAATGTGGTGGTCTACCGTTGGCTATTACTACAGTGTCTAGTTTGTTAGTGGATCAGCGCACAAAAGATGAATGGGAGAGGGTGCTAACTGCTATTGGCTCCACACTTGCGAACAATCCAGATGTTGGGAACATGACAAAGATATTATCTTTCAGTTACTTTGATCTTCCCCACCATTTAAGAACTTGTTTTTCTTACTTGAGTGTATTTCCAGAGGATTGTGAGATCGAGAAAAAACATTTGATAAATAGATGGATCGCAGAAGGATTCGTTCATGAAGAAAATGGCCAAAGTGCATATGAAGCTGGTGAGCGTTATTTTAATGATCTCATCAATAGAAGCTTGATCCAACCTGTTGATATAAAATATGGTCAGGCGAGGGTGTGCCGAGTTCATGACATCCTTCTTGATTTCATCACATGCAAGGCAGCTGAAGAGAATTTCATCACCTCAGTGGATTCTGTAGATCATGGGCCAGTTTCAGATTACAAAGTCCGGAGGCTTTGTGTCGATAATCGCAACATACAAGAAAATATCCTACTGAGAGGCCTGATCCTCTCTCATGTTAGATCACTCACTATAtatttgggaattttctgcaaattcctttgtccacattcacagctctacgtgtgttggacctag
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| CDS seq | atggatctgcttgtgggcgtctctacgggggtgacgggacccctcctgtccaagctctcaatgctgctggaccaagagtacggcaagctcaaaggtgtgcacAaacatatcaagtccttgagagatgagctgaccatcatgaatgccacacttcagatgattgcaaattctgaggagctcaaccctcaaatgaaagattggagggacaaggtacgcgagcttgcctatgacatggaggattgcatcgatgaatttattacttttgttgaccatgaacatgatggcctgatggcctccaagggattctttcacaagctgaagaaagtaaaagctcgctacaagattgctagtcagattaaagaactcaagacctgtgctgttgaggtaagcaaaaggcaaatgaggtataatattgtccaatcaacacctagctccacgctttacgaagaggttgatagacttgtggatatcgatggtcctaagaagcatatcattgagtgcttaaccaagtttaccgagggttcttctacgcagcttaaagtggtctcgattgttggttgtggtggtcttggtaagactactcttgcaaaacaggtctaccaaaccattaaaagccaatcttcatgttcaacttttgtgtcagtttctcgaaatcctaatatgaaaaagatcttaaggaacattgccgaaggagtggggatcattggttacacaacagatgatgatatcgagcaagtgatcgacaaattcagaaaacacctccaatgtaaaaggtacttagttgtGATTGATGATGTATGGGATACAGAAGCATGGAAAGTTATCAGGCTTGCTTTGTTCGATAATAGAAGTGGCAGCAGAATCGTAGTGACCACACGAAATGCTTCAGTTGCATCAAATTGCTCAAGTGATGGTGGTTATGTTTATCACATGGAGCCTCTTTGCTTTGCTGACTCCAAAAGGCTGTTTTGCAAAAGGGCATTTGGCTTAGAGGAACTGTGTTATCCTCGTCTGAAAGAAGTTATGTATGGGATATTGGAAAAATGTGGTGGTCTACCGTTGGCTATTACTACAGTGTCTAGTTTGTTAGTGGATCAGCGCACAAAAGATGAATGGGAGAGGGTGCTAACTGCTATTGGCTCCACACTTGCGAACAATCCAGATGTTGGGAACATGACAAAGATATTATCTTTCAGTTACTTTGATCTTCCCCACCATTTAAGAACTTGTTTTTCTTACTTGAGTGTATTTCCAGAGGATTGTGAGATCGAGAAAAAACATTTGATAAATAGATGGATCGCAGAAGGATTCGTTCATGAAGAAAATGGCCAAAGTGCATATGAAGCTGGTGAGCGTTATTTTAATGATCTCATCAATAGAAGCTTGATCCAACCTGTTGATATAAAATATGGTCAGGCGAGGGTGTGCCGAGTTCATGACATCCTTCTTGATTTCATCACATGCAAGGCAGCTGAAGAGAATTTCATCACCTCAGTGGATTCTGTAGATCATGGGCCAGTTTCAGATTACAAAGTCCGGAGGCTTTGTGTCGATAATCGCAACATACAAGAAAATATCCTACTGAGAGGCCTGATCCTCTCTCATGTTAGATCACTCACTATAtatttgggaattttctgcaaattcctttgtccacattcacagctctacgtgtgttggacctag
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| Protein seq | MDLLVGVSTGVTGPLLSKLSMLLDQEYGKLKGVHKHIKSLRDELTIMNATLQMIANSEELNPQMKDWRDKVRELAYDMEDCIDEFITFVDHEHDGLMASKGFFHKLKKVKARYKIASQIKELKTCAVEVSKRQMRYNIVQSTPSSTLYEEVDRLVDIDGPKKHIIECLTKFTEGSSTQLKVVSIVGCGGLGKTTLAKQVYQTIKSQSSCSTFVSVSRNPNMKKILRNIAEGVGIIGYTTDDDIEQVIDKFRKHLQCKRYLVVIDDVWDTEAWKVIRLALFDNRSGSRIVVTTRNASVASNCSSDGGYVYHMEPLCFADSKRLFCKRAFGLEELCYPRLKEVMYGILEKCGGLPLAITTVSSLLVDQRTKDEWERVLTAIGSTLANNPDVGNMTKILSFSYFDLPHHLRTCFSYLSVFPEDCEIEKKHLINRWIAEGFVHEENGQSAYEAGERYFNDLINRSLIQPVDIKYGQARVCRVHDILLDFITCKAAEENFITSVDSVDHGPVSDYKVRRLCVDNRNIQENILLRGLILSHVRSLTIYLGIFCKFLCPHSQLYVCWT |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0004910 | OsLima_08g0004910.01 | Chr08 | 4171031 | 4173582 | + | NAM | ||
| CDS seq | atggatctgcttgtgggcgtctctacgggggtgacgggacccctcctgtccaagctctcaatgctgctggaccaagagtacggcaagctcaaaggtgtgcacAaacatatcaagtccttgagagatgagctgaccatcatgaatgccacacttcagatgattgcaaattctgaggagctcaaccctcaaatgaaagattggagggacaaggtacgcgagcttgcctatgacatggaggattgcatcgatgaatttattacttttgttgaccatgaacatgatggcctgatggcctccaagggattctttcacaagctgaagaaagtaaaagctcgctacaagattgctagtcagattaaagaactcaagacctgtgctgttgaggtaagcaaaaggcaaatgaggtataatattgtccaatcaacacctagctccacgctttacgaagaggttgatagacttgtggatatcgatggtcctaagaagcatatcattgagtgcttaaccaagtttaccgagggttcttctacgcagcttaaagtggtctcgattgttggttgtggtggtcttggtaagactactcttgcaaaacaggtctaccaaaccattaaaagccaatcttcatgttcaacttttgtgtcagtttctcgaaatcctaatatgaaaaagatcttaaggaacattgccgaaggagtggggatcattggttacacaacagatgatgatatcgagcaagtgatcgacaaattcagaaaacacctccaatgtaaaaggtacttagttgtGATTGATGATGTATGGGATACAGAAGCATGGAAAGTTATCAGGCTTGCTTTGTTCGATAATAGAAGTGGCAGCAGAATCGTAGTGACCACACGAAATGCTTCAGTTGCATCAAATTGCTCAAGTGATGGTGGTTATGTTTATCACATGGAGCCTCTTTGCTTTGCTGACTCCAAAAGGCTGTTTTGCAAAAGGGCATTTGGCTTAGAGGAACTGTGTTATCCTCGTCTGAAAGAAGTTATGTATGGGATATTGGAAAAATGTGGTGGTCTACCGTTGGCTATTACTACAGTGTCTAGTTTGTTAGTGGATCAGCGCACAAAAGATGAATGGGAGAGGGTGCTAACTGCTATTGGCTCCACACTTGCGAACAATCCAGATGTTGGGAACATGACAAAGATATTATCTTTCAGTTACTTTGATCTTCCCCACCATTTAAGAACTTGTTTTTCTTACTTGAGTGTATTTCCAGAGGATTGTGAGATCGAGAAAAAACATTTGATAAATAGATGGATCGCAGAAGGATTCGTTCATGAAGAAAATGGCCAAAGTGCATATGAAGCTGGTGAGCGTTATTTTAATGATCTCATCAATAGAAGCTTGATCCAACCTGTTGATATAAAATATGGTCAGGCGAGGGTGTGCCGAGTTCATGACATCCTTCTTGATTTCATCACATGCAAGGCAGCTGAAGAGAATTTCATCACCTCAGTGGATTCTGTAGATCATGGGCCAGTTTCAGATTACAAAGTCCGGAGGCTTTGTGTCGATAATCGCAACATACAAGAAAATATCCTACTGAGAGGCCTGATCCTCTCTCATGTTAGATCACTCACTATAtatttgggaattttctgcaaattcctttgtccacattcacagctctacgtgtgttggacctag
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| Protein seq | MDLLVGVSTGVTGPLLSKLSMLLDQEYGKLKGVHKHIKSLRDELTIMNATLQMIANSEELNPQMKDWRDKVRELAYDMEDCIDEFITFVDHEHDGLMASKGFFHKLKKVKARYKIASQIKELKTCAVEVSKRQMRYNIVQSTPSSTLYEEVDRLVDIDGPKKHIIECLTKFTEGSSTQLKVVSIVGCGGLGKTTLAKQVYQTIKSQSSCSTFVSVSRNPNMKKILRNIAEGVGIIGYTTDDDIEQVIDKFRKHLQCKRYLVVIDDVWDTEAWKVIRLALFDNRSGSRIVVTTRNASVASNCSSDGGYVYHMEPLCFADSKRLFCKRAFGLEELCYPRLKEVMYGILEKCGGLPLAITTVSSLLVDQRTKDEWERVLTAIGSTLANNPDVGNMTKILSFSYFDLPHHLRTCFSYLSVFPEDCEIEKKHLINRWIAEGFVHEENGQSAYEAGERYFNDLINRSLIQPVDIKYGQARVCRVHDILLDFITCKAAEENFITSVDSVDHGPVSDYKVRRLCVDNRNIQENILLRGLILSHVRSLTIYLGIFCKFLCPHSQLYVCWT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0412100 | SBH | 0.840449 | 0.769904 | 1.208634 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07890 | SBH | 0.021331 | 0.0 | 0.141555 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0205150 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005210 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005230 | RBH | 0.0 | 0.467364 | 0.275930 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005270 | SBH | 0.0 | 2.212497 | 0.109327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004960 | SBH | 0.374005 | 5.202730 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0066900 | SBH | 1.110872 | 14.6362895 | 1.6636305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004790 | RBH | 0.0 | 1.880098 | 0.044126 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0072600 | RBH | 1.279657 | 2.9665565 | 1.7377145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026670 | RBH | 0.0 | 0.220850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004960 | SBH | 0.0 | 6.074957 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004780 | RBH | 0.0 | 29.165091 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005060 | RBH | 0.0 | 1.051545 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004970 | SBH | 0.0 | 12.842177 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004910 | SBH | 0.023444 | 2.329770 | 0.062550 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004870 | RBH | 0.0 | 4.828468 | 0.0 |
