Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0004820 | OGI:08011190 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:4085369-4092224 | ||||||||
| Gene Symbol | PI304, OsPi304 | ||||||||||
| DNA seq | atttcctcagatcctgaacaattacaagtagcttcctactattacgactagtaccatcaaactacttcatctgactgagagttgagctcagacataagagagtaatggcgacgatgcttgtgggtgtttctacaggagtaatgaacaccctcctgtccaagctctccaagattttggaggacaaatacacaaagctcaaaggagtacgccgtcaaattgcattctttagaaatgagttgagcagcatgaaggctgccttggagatgcttgaaactgtagaggaacttgatcccctccagaaggaatggagggacacagtgcgtgagctggcttatgatattgaggactgtattgatcccttcttggttcttgttgatcagaagcaagatgaacaatcaacattctttaaggggttctcctacaaactgaagaagatgaaggctcgccatgagatctctaatgagattgaagaactgaagacacgcgtgatagaggcaagcaagaggcacaagagatataattttgttggtctacaatccagccatggcacttctggtattgaccctaggctgcgagcactctacgttgagattgatgagcttgtggaaatcaaaggaccaaaggagcatgtcatggagtggtttgccaaggggagaggtgatgtagaagtgaaggtgttgtccgttgtgggttttggaggtctgggtaagactactcttgccaaccaaatcttccgtcaattgaagtgccaatttgaatgcacaggttttgtatctgtgtcacgaagtcctgacataaagagtattttaagacaaatgtatactgaggtagggatcactgatgacacatctgaagatgagcgacaactgatagacaaaataaaggaccacctcaaagatAaaaggtaaacccggtaatccacttataacaactaatgattttctgcattttgttaagcacagaaaccaaacatggaagcatacaataaacaataattagtggcataactacatgcattttctttgtttataaagtgcatactgcatatacatatgctaaaaacaagaagtctagtcttgactgctataactgtcatgagtaaattgcataaactttctaaaccatttttgtataataacattaatgaaaaactaacttcttgatggcaaatgacaaagacgtgtgtaaatttgtactgcttgactttttttcaacaaaatccaaatttacaaataggatttcttttctcagagtgcaaaattgtactgcttgatggcaaatggcaacacatatgtgagcatatggaaaggaaggtatttttctccgttcctactggaacaaaactaccacctgtggaatatctgcattccaaacAaATTTTTTTTCTCAAAAGCGCAGGACTGCATTTCATTTCATCAAGAAGAAAGGAAATAAATACAAAAAGAGGAGGCTAAACTAACACCAGCCTACACTAACAACACCTAAGGGCAACACACAACCTCAACAAGCAAACACAAACTAATTGCCTGGGGTAAGCAAACCTACAGTGAAACTCATGGAGTGCGTAAGCTCCAGCAAAACTACACTCATTTATTTTATAGCCTGCAAACTCCTGCGCCACCCCCCCCCCCCCCCAAAAAAAAACGTTTGGATTAGCACTATTGAAAACACAATCGTTGCGATGTTTCCAAATCTCCCAAGCAACTAGGATGATCAACGAGTTCAATCAGTTGTGCAACTCTAGATACCCCTTGATGGCTTTGCCCCACCATGCTGAGAATCAAGTTTATGATGGTTGAGGTGCAGCACCAGCCAGCCGTAGCCTCAAGAGGAGTGGGGCAAGAGAAAACACATGATACGAGGATATGCTGAAATAGTCATCACCACTTTGGTCGCTTATTGGGCAGGCAACAAAATGTGACAACCCTCGCTTAGCAAGTCGATCAGAAGTCAACATATGACGTTGATTGCTAACCAAATAAAAAACTTGCAACATAAAGGagctcagcttttccaaatccgcttccatggagcaaacttgatagatcccaggaaataagacttgtaggctgatttacttgtgtgggaaccagaccctgtgagcttccaaatatgctggtcctgaactccatgctgcaagaccaccccatcaaccaaatcccagatcagcaaatacttagagagaacatggacagacaagccaccttttataccagccacccaccgcctatttactagtgcttgtgccacagtacattgcttcgttgatcttttggtgattaaataaaaaagattgggaaagggcatgtagcctagtggttgcagtaatctgagtagcaccccaaggtcctaagttcaaatctctataggagcgaatttcggattgggttatttgaggactaagttccctgtttgataggctaagttcctaatttaaaaaggctgcatatatccggttggatgtagagatcgggtaaaaaaaatacccttctctaaaaaaaaaagattgggagcctattcagttatcgttcttccttgccaccatctatcactccagtacatggtattttccccgttgccaactatagtttccacacccactctgaacacagagcaaacactgcgatgtacttgtataggtaacacggcccaaggcctagtggagtcagtttttttaagtctaagccacctcaagattatgaatgcgaagccccccttaaagagaggccaacaaacacgatcccaggagacaaggcagttatcactattggccttctcctgacccttccaaaggaagcccttgcgccttttatcaatagccctggacacccatttgggaagattcattgccatgaccgaatagataagtataactgtcaagaccacacagaccatcacaagccggccagcctggttcataagggaagctttccacactggtaggccatccgccactttgtcaaccaatggcaacaaatcatccttaatgggtttgcgagttgtgacggaaggccaagataagagcaaggaaagctcttcacttcacaagaaagctcagtggagagaacttccaagtcttcctcggaacattggataggggtgcacaaactccttgtcattttggtcttaagacctgaaatacacccaaaaaaatctaggatcacccttgtaggttagaggaacatcattgttatgtggagggatgaattggggtgcttgacgggagggcaaggttgctgcagcctcgccaccccggagcctaggtgaggccgaacagagaagaggggagactagagataggtttaacttctttcttgattaattccacatgactgtggtgcctctccttatatagagccggctcctaacaaacatcctaacaaccttatcaaataaagcctaacaaacctcctaacaaccttatctaataaagcctaataaccttatctaataatgagaggggctgagttctgcccataacaatcaccatattatctgtgcgtatagagaaatccgatgtgccatctttggaacagcatggggctgacgaagattattgtggatgcatgaaccacgataaattcagcaaattcataactaaaaaaaaacatggggatggaggctccgaagatgaagtgttAtttgccccggttccctattaatcaaagctcctgtggaagaagtggagagcggtaggcatagcaagttacaataccaccttccaaaccccaagtattttagtacctcaattaggaaggaccaatcaagcgaatcaaaggcctttgatatgtcaagtttaaacaaaacatggggctctttcttactgtgtaattttcttgccacctgttggacaagcagacaattgtcctgtatacttcttcccttgatgaatgcactttgatttatggaaaccatccccggaagcaaaggtgctaggcgatgtgccaaccaacttagcaaaatttgaataagactaatggaacgataatcctttacttgaatcgcatcaattttttttttggcaacaaggcaatgaaagctgttttaagaagtttgaacttagccacatgaccacactgaattgctgagaaggccaaagatcacatcattttttgataatgtcccaagtcccaacacgatgtagaaccgaaagttccaacttccgaacaattgaatgtccacaataaatccatgcattaagatacattgccacatactcccctcaataagtgtatttttagcctaacaatttgtccctaatagagtgtagttttatagtggtccactagacctctttaatactacatccttttcttctcattttagtcattgaacaaatagtactccctcctcctcgttttctccccctccttgttttctctccattttaatgaagggcatattagtcttttgacctcgtccttaatatgtctttgactagctaaaactacagttatttagggacggagggttttatgtgtgcaaaatctgaccatatatatgctttgagaagacatatccatttccctaactaggttcctcattgatatttataaaactgggacctgagctctagagtaagcatgcatactagtatataaccctgattgcagtagggtggtaagcatacttgaatgatatataactaaataaccctgttaaaatcatggaacaggtactttgttgtaattgatgatgtatgggatgttgaagcatgggaagctgtgaaacttgccttgttcaataatagatgtggtagcagaatcgtcatgacaacacgtaatgcagcagttgcatcgcattgctcacgtggtggtggttgtgtctatcaaatggaaccccttagttttgctgactccaaaatgttgttttgccaaagagcatttcattCccaggaattatactatccccatttggaagaagtttgtgatgagatactggcaaagtgtggtggattaccattggcaattattactgtatctagcttgttagccggcaagcatgcaaaagatgaatgggacaggatgctaactgctattggccatgcacttgctaagaatcctgatgctgctaacatgacaaagatattatctctcagttactttgatcttccccaccatctaagaacttgtttcttatatttgagtgtatttccagaagattacaagatcagcaagcaacacttgataaatagatggattgccgaaggatttgttcatgaagaacaaggatggaggacctatgaagttggcgggaactattttaatgatctcatcaatagaagtttgatccaaccagttgatataaatgatggccaggcgaaggcatgtcaagttcatgacatcattcttgatttcatcacatgcaaggctgccgaggaaaatttcgtcacctcagtgaattctgtggagcatgggaacatttcagaatgcagaattcataggctctgtgtcaagaatcacaataatgaaaaggttagcaaaccaacaagcctgaatgtcactcatgtccggtcacttaccatgtttgggcatgtcgatggaatttccttgtttgctttcccaattttgcgtgtgttggacttatcatattcactgttaaaagacaaacatcttaaaaatattgaaaagttgcatttctcaagtatttatctctccggtcaacattaataactaagctcccaagaaagattggacaactgaactgtctagaaacactggacatatcttatactgaaattctagaactgccgctaagtattgcaaaacttgagtgcctggccaatctatatgttggaagagggactggatttccggacagattaattggtaagatgcatagcctggtagaactagaggaatttggcgtgtcatgtgaactaggcaagtctctgcaaggattcagtcagctatcaaagcttaggacgttgaaagttcatcttttttggtggtcagatgctgaggagtgtcaaaattacgtgtcagctttgctatctagcaaccttcatcatctatatttgaccggtggcccactgatcatggagaagtggtaccctcctagtccttgcatcatccggaagcttcatatcataggctgttacatccgtaaggtcccaaactggatgagctcgcttggaagcctcactgaattacaactctggatccatagaatgggaccgaatgatattgagatccttggcgcaatacccagcttgtgttttctcaaacttaaaactatgtgtggcatcaatggaaggatcatcatatgtagcaacaaaggattcagaagtctgacatatttctcattacgaatcaagagatgtgggaccttgctagagtttgaaccagaatcaatgccaaagcttgataacttccaagtggaattccgtttacatggaatggattgcttgaatggtgcttctgatttcggcatccagcacctctccgcccttaccaaagtcaagatcggtatttggggcaacatttgctctgatggtatttatgatccagaacaagatatgaacaatagcatcaccaggtctgttgttagcctaatcaaagctgccatcgagaagcttcccaatcatccaactagcagattccatttagagtatgatcatggaagttgtttattggtaagttcttgaccagacctggagacattgattgttaattcatcgtcttagtttcaaatcctattattgttattattactatttgtttcttggatgctgcaaaagtgcaatatcttatcgtttaattggacaattaattcgctcctggcttgtcgctctctttcttgagctgtggctctgtgcctgtttccttccaacatttgcaggacgtacctcacctga
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| CDS seq | atggcgacgatgcttgtgggtgtttctacaggagtaatgaacaccctcctgtccaagctctccaagattttggaggacaaatacacaaagctcaaaggagtacgccgtcaaattgcattctttagaaatgagttgagcagcatgaaggctgccttggagatgcttgaaactgtagaggaacttgatcccctccagaaggaatggagggacacagtgcgtgagctggcttatgatattgaggactgtattgatcccttcttggttcttgttgatcagaagcaagatgaacaatcaacattctttaaggggttctcctacaaactgaagaagatgaaggctcgccatgagatctctaatgagattgaagaactgaagacacgcgtgatagaggcaagcaagaggcacaagagatataattttgttggtctacaatccagccatggcacttctggtattgaccctaggctgcgagcactctacgttgagattgatgagcttgtggaaatcaaaggaccaaaggagcatgtcatggagtggtttgccaaggggagaggtgatgtagaagtgaaggtgttgtccgttgtgggttttggaggtctgggtaagactactcttgccaaccaaatcttccgtcaattgaagtgccaatttgaatgcacaggttttgtatctgtgtcacgaagtcctgacataaagagtattttaagacaaatgtatactgaggtagggatcactgatgacacatctgaagatgagcgacaactgatagacaaaataaaggaccacctcaaagatAaaaggtactttgttgtaattgatgatgtatgggatgttgaagcatgggaagctgtgaaacttgccttgttcaataatagatgtggtagcagaatcgtcatgacaacacgtaatgcagcagttgcatcgcattgctcacgtggtggtggttgtgtctatcaaatggaaccccttagttttgctgactccaaaatgttgttttgccaaagagcatttcattCccaggaattatactatccccatttggaagaagtttgtgatgagatactggcaaagtgtggtggattaccattggcaattattactgtatctagcttgttagccggcaagcatgcaaaagatgaatgggacaggatgctaactgctattggccatgcacttgctaagaatcctgatgctgctaacatgacaaagatattatctctcagttactttgatcttccccaccatctaagaacttgtttcttatatttgagtgtatttccagaagattacaagatcagcaagcaacacttgataaatagatggattgccgaaggatttgttcatgaagaacaaggatggaggacctatgaagttggcgggaactattttaatgatctcatcaatagaagtttgatccaaccagttgatataaatgatggccaggcgaaggcatgtcaagttcatgacatcattcttgatttcatcacatgcaaggctgccgaggaaaatttcgtcacctcagtgaattctgtggagcatgggaacatttcagaatgcagaattcataggctctgtgtcaagaatcacaataatgaaaagcacctctccgcccttaccaaagtcaagatcggtatttggggcaacatttgctctgatggtatttatgatccagaacaagatatgaacaatagcatcaccaggacgtacctcacctga
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| Protein seq | MATMLVGVSTGVMNTLLSKLSKILEDKYTKLKGVRRQIAFFRNELSSMKAALEMLETVEELDPLQKEWRDTVRELAYDIEDCIDPFLVLVDQKQDEQSTFFKGFSYKLKKMKARHEISNEIEELKTRVIEASKRHKRYNFVGLQSSHGTSGIDPRLRALYVEIDELVEIKGPKEHVMEWFAKGRGDVEVKVLSVVGFGGLGKTTLANQIFRQLKCQFECTGFVSVSRSPDIKSILRQMYTEVGITDDTSEDERQLIDKIKDHLKDKRYFVVIDDVWDVEAWEAVKLALFNNRCGSRIVMTTRNAAVASHCSRGGGCVYQMEPLSFADSKMLFCQRAFHSQELYYPHLEEVCDEILAKCGGLPLAIITVSSLLAGKHAKDEWDRMLTAIGHALAKNPDAANMTKILSLSYFDLPHHLRTCFLYLSVFPEDYKISKQHLINRWIAEGFVHEEQGWRTYEVGGNYFNDLINRSLIQPVDINDGQAKACQVHDIILDFITCKAAEENFVTSVNSVEHGNISECRIHRLCVKNHNNEKHLSALTKVKIGIWGNICSDGIYDPEQDMNNSITRTYLT |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0004820 | OsLima_08g0004820.01 | Chr08 | 4085369 | 4092224 | + | NAM | ||
| CDS seq | atggcgacgatgcttgtgggtgtttctacaggagtaatgaacaccctcctgtccaagctctccaagattttggaggacaaatacacaaagctcaaaggagtacgccgtcaaattgcattctttagaaatgagttgagcagcatgaaggctgccttggagatgcttgaaactgtagaggaacttgatcccctccagaaggaatggagggacacagtgcgtgagctggcttatgatattgaggactgtattgatcccttcttggttcttgttgatcagaagcaagatgaacaatcaacattctttaaggggttctcctacaaactgaagaagatgaaggctcgccatgagatctctaatgagattgaagaactgaagacacgcgtgatagaggcaagcaagaggcacaagagatataattttgttggtctacaatccagccatggcacttctggtattgaccctaggctgcgagcactctacgttgagattgatgagcttgtggaaatcaaaggaccaaaggagcatgtcatggagtggtttgccaaggggagaggtgatgtagaagtgaaggtgttgtccgttgtgggttttggaggtctgggtaagactactcttgccaaccaaatcttccgtcaattgaagtgccaatttgaatgcacaggttttgtatctgtgtcacgaagtcctgacataaagagtattttaagacaaatgtatactgaggtagggatcactgatgacacatctgaagatgagcgacaactgatagacaaaataaaggaccacctcaaagatAaaaggtactttgttgtaattgatgatgtatgggatgttgaagcatgggaagctgtgaaacttgccttgttcaataatagatgtggtagcagaatcgtcatgacaacacgtaatgcagcagttgcatcgcattgctcacgtggtggtggttgtgtctatcaaatggaaccccttagttttgctgactccaaaatgttgttttgccaaagagcatttcattCccaggaattatactatccccatttggaagaagtttgtgatgagatactggcaaagtgtggtggattaccattggcaattattactgtatctagcttgttagccggcaagcatgcaaaagatgaatgggacaggatgctaactgctattggccatgcacttgctaagaatcctgatgctgctaacatgacaaagatattatctctcagttactttgatcttccccaccatctaagaacttgtttcttatatttgagtgtatttccagaagattacaagatcagcaagcaacacttgataaatagatggattgccgaaggatttgttcatgaagaacaaggatggaggacctatgaagttggcgggaactattttaatgatctcatcaatagaagtttgatccaaccagttgatataaatgatggccaggcgaaggcatgtcaagttcatgacatcattcttgatttcatcacatgcaaggctgccgaggaaaatttcgtcacctcagtgaattctgtggagcatgggaacatttcagaatgcagaattcataggctctgtgtcaagaatcacaataatgaaaagcacctctccgcccttaccaaagtcaagatcggtatttggggcaacatttgctctgatggtatttatgatccagaacaagatatgaacaatagcatcaccaggacgtacctcacctga
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| Protein seq | MATMLVGVSTGVMNTLLSKLSKILEDKYTKLKGVRRQIAFFRNELSSMKAALEMLETVEELDPLQKEWRDTVRELAYDIEDCIDPFLVLVDQKQDEQSTFFKGFSYKLKKMKARHEISNEIEELKTRVIEASKRHKRYNFVGLQSSHGTSGIDPRLRALYVEIDELVEIKGPKEHVMEWFAKGRGDVEVKVLSVVGFGGLGKTTLANQIFRQLKCQFECTGFVSVSRSPDIKSILRQMYTEVGITDDTSEDERQLIDKIKDHLKDKRYFVVIDDVWDVEAWEAVKLALFNNRCGSRIVMTTRNAAVASHCSRGGGCVYQMEPLSFADSKMLFCQRAFHSQELYYPHLEEVCDEILAKCGGLPLAIITVSSLLAGKHAKDEWDRMLTAIGHALAKNPDAANMTKILSLSYFDLPHHLRTCFLYLSVFPEDYKISKQHLINRWIAEGFVHEEQGWRTYEVGGNYFNDLINRSLIQPVDINDGQAKACQVHDIILDFITCKAAEENFVTSVNSVEHGNISECRIHRLCVKNHNNEKHLSALTKVKIGIWGNICSDGIYDPEQDMNNSITRTYLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0174800 | RBH | 7.988661 | 4.923272 | 7.450869 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07890 | SBH | 0.021331 | 0.0 | 0.141555 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0174800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005070 | SBH | 0.812035 | 18.276396 | 7.275752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005150 | SBH | 0.566129 | 3.807593 | 2.670955 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005100 | SBH | 7.566620 | 6.326895 | 14.904929 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005150 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004870 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0066900 | SBH | 1.110872 | 14.6362895 | 1.6636305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004700 | SBH | 0.955543 | 0.887038 | 1.775215 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0072600 | SBH | 1.279657 | 2.9665565 | 1.7377145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026730 | SBH | 0.235404 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004870 | SBH | 0.350438 | 8.225467 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004890 | SBH | 0.915712 | 8.369355 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004790 | SBH | 0.0 | 0.0 | 0.0 |
