Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0004510 | OGI:08010570 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:3842002-3845110 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaatattgtgtaattgttgcataccaaccatggcgagcatgattatatccatacctctttttctggaggaattcgtggagtttgttgatgagttgcctttcattcaacaacatcatatttgagttggtgtacatctgcttgtcaatatcaataagaatatccctaaggactttcttcatgtctggtttctgaccaattagaacaaaagctccgtagtcgaaacctggtttaaccttatcatagacggctttggcaagagtagtcttgccaagtcctcctaatccgaagatggacacaaacttggttttcttaatgggtacatgaacatccatcttcctcttcttggagggcatatggacatggaataagttcactgtgggtccctctatttgtcgtccagttcgattttcgtcccttgaccacaaaacctggtatgacccgtcccccaacttacgaaaaccgggtaaacgtggtccctcggcggttttgaaggtggTtttggctgacgtggcgcctacgtggcttgtttgacttggttttttgtcccacgtggcattgacgtggcgcttacgtggcaattatatctcggaaaaataataaaaagcgtggccccacatgtcagctgcacaaacaaaaatagttttaaaatggtggggcccacatgggccccatatgtcagcctcactcatctcttcttccctctcccttctctctcttctttcctttcccccctctctctcTttctccttcccaggcaggggacgacgcgggtgggcggcagagcaggcgagctccggcggcggcgggcgtggtcggcgccgccccccgaccggagcgccgccggtccgcgtgaaggcaggtccgggcgtctagggaggtccggcagccggcgctacggcggcggcggccggcggcgggagcgctgggcgagcatgaacggggcggcggcgggcagagcggcagcacgaagccgaaggggtgccagcctcatcatcgtcttcttctggcgcacagtcgtggagcggcgggcggagcgacggcgacgggcagagggcggagcagaggggcggttggcggagcgacaacaggcggcgagcggcgtggcgagagcgctgcgagggaggaggcgaacttgtcggggtggccggcgggagaagaggccgcgcgcgccggcctatgggagggacggagaggagcgggggtcggcagccggcgggagtcggcgatgcgcgggggtcaacggttggcggaggtggccggaggaggaataggcagaggaggaggtcgccggcgagcgcaggctccacgccgtcagctgctccgcctgagatgtccagcaaaacgacgccgcccctcctcgctcggtcgccgagcgccgcctccCTcctcgcacggccaccgcacgccgcctccaggggcgaagccaggataaatgatcgccggggtcattacaaaccagggtatatgttttcaaccaaaacggattgaaaacaacgcaattttgatgttccaactcgagacaaaagtaaattctgagtgaaatttcgaatagttttcaaaaattcaaatttggaatggtaaaattgaaccaaaataataaaaaatataaattttggtaaaaaaaagtcatatcgctatgtttgggatccaatactaaatcgaagaggtgaaccctcatacaatctggttgtgttcggacctagcaattggttctgaacccttctgtcccaacacgcaaaatgaagcaaggattaacacgtaattaattaagtattagcttataaaaacttgaaagataatagattaatttggtttttaaagcaattttctatagaaattattttgctagggaatttgagacgaagttgtgggccattggccttatgcatggtctcaaatctcaaaaactcaaatgtatatccatattcagctgacgtatatataatcataagtggtagctaaTtttctatttgcgctgctgcagtattgtttataattatcaattgggatttaacgtagcaatcaataattaatgtcaccggggtctaatattttttttcaccggggtcatagctggtaaagggttatagctggtaaagtaaagaggacacgagaggttaaaagaaaatcatcggggtcaactgaccccggtaaataactgtagcttcgcccctggccgcctccctcctcgCccgggtgccgcccgccgcctctcctcgcctggccgccgccgccgatgtcctcgatggtcacatccgggtcggagcccctcctctcgcccggctgccgcgtgccgcctccctcatcgcccggccgtcgcgcgccgctccgcccatcgccccccgctgcgccgccgctcaccactgtaaaggagagagaggggggatagagagtagagggggctgacatgtgggaccacaggggccccaccttttcttattatttttgtgtagctgacatgtaggtcccacgttttttattattttcctgagatcctattgccacgtaagcgccacgtcaatgccacgtgggacaaggaccaagtcaaagggagccacgtaggcgccacgtcatccaaaaccgggcacaatactgccgagggacctcttttgcacggttttataagttgagggacccgtcatacccggttttgcgaccgagggacgaaaatcggactgggcgacaaatagagggatctaatgtgaacttattcctatgcacatcgatgtcgtccccaagggaaagggccaacatctttatgagctcgcccattggtccgtcaattccaacaagctctgatgaCTTcttgtacaaagcctggaggcgaggatcaatggtcgctaggcctgctggcttggcgacgatgccatcgaccaagttcctggcacgtctgtccgccacctcttggagcttctTGtggatgcctttgaccgcgactgcgatttcatggcaagccttgatcttcttgtacaggttaaccatgctctccagctcctgtgagagagatatgacctgatccctgacgcccttgtgcaggccatactcctccttgagcagctgccccagcttgggcagcagcttccccatggcccccgtcaccagctccat
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| CDS seq | atggagctggtgacgggggccatggggaagctgctgcccaagctggggcagctgctcaaggaggagtatggcctgcacaagggcgtcagggatcaggtcatatctctctcacaggagctggagagcatggttaacctgtacaagaagatcaaggcttgccatgaaatcgcagtcgcggtcaaaggcatccaCAagaagctccaagaggtggcggacagacgtgccaggaacttggtcgatggcatcgtcgccaagccagcaggcctagcgaccattgatcctcgcctccaggctttgtacaagAAGtcatcagagcttaaaccagacatgaagaaagtccttagggatattcttattgatattgacaagcagatgtacaccaactcaaatatgatgttgttgaatgaaaggcaactcatcaacaaactccacgaattcctccagaaaaagaggtatggatataatcatgctcgccatggttggtatgcaacaattacacaatattga
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| Protein seq | MELVTGAMGKLLPKLGQLLKEEYGLHKGVRDQVISLSQELESMVNLYKKIKACHEIAVAVKGIHKKLQEVADRRARNLVDGIVAKPAGLATIDPRLQALYKKSSELKPDMKKVLRDILIDIDKQMYTNSNMMLLNERQLINKLHEFLQKKRYGYNHARHGWYATITQY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0004510 | OsLima_08g0004510.01 | Chr08 | 3842002 | 3845110 | - | NAM | ||
| CDS seq | atggagctggtgacgggggccatggggaagctgctgcccaagctggggcagctgctcaaggaggagtatggcctgcacaagggcgtcagggatcaggtcatatctctctcacaggagctggagagcatggttaacctgtacaagaagatcaaggcttgccatgaaatcgcagtcgcggtcaaaggcatccaCAagaagctccaagaggtggcggacagacgtgccaggaacttggtcgatggcatcgtcgccaagccagcaggcctagcgaccattgatcctcgcctccaggctttgtacaagAAGtcatcagagcttaaaccagacatgaagaaagtccttagggatattcttattgatattgacaagcagatgtacaccaactcaaatatgatgttgttgaatgaaaggcaactcatcaacaaactccacgaattcctccagaaaaagaggtatggatataatcatgctcgccatggttggtatgcaacaattacacaatattga
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| Protein seq | MELVTGAMGKLLPKLGQLLKEEYGLHKGVRDQVISLSQELESMVNLYKKIKACHEIAVAVKGIHKKLQEVADRRARNLVDGIVAKPAGLATIDPRLQALYKKSSELKPDMKKVLRDILIDIDKQMYTNSNMMLLNERQLINKLHEFLQKKRYGYNHARHGWYATITQY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0170700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07380 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0170700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004780 | SBH | 0.410206 | 6.967423 | 1.454737 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004850 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004800 | SBH | 0.126698 | 5.542014 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0004850 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004590 | SBH | 2.174781 | 4.601822 | 3.999743 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0061900 | SBH | 0.6057375 | 16.6181255 | 19.854616 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004410 | SBH | 0.0 | 0.000000 | 0.124746 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0067500 | RBH | 2.8703735 | 9.310707 | 2.6230105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004560 | SBH | 0.102358 | 13.081815 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004570 | SBH | 0.283523 | 8.665009 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004500 | SBH | 0.0 | 0.498292 | 0.199127 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004450 | SBH | 0.196929 | 19.886856 | 1.295312 |
