Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0003770 | OGI:08009030 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:3276892-3280150 | ||||||||
| Gene Symbol | C3H56, OsC3H56 | ||||||||||
| DNA seq | agcagaaaaacaacagatgacaggtaaacaggcagttcatactttcagataaccatatctaactttccaggtacaggtattgcaaccatgacttcatatcatgtaagcaccatacatgatatcaggtattgcaacagacagcacaacataaaattcagtctaacaacccgcagactatgtcttgactctgaccaggtttccacatggctaatctaaatgtcttgagaccaggattccaaaatggctaactaattgacatctccttttcgctcaagacaatggtttttcccaatggctaactatagcatcttgttttcgccttcaggtggtggcgacgaaagatcaaaggtttgatttcgcctactcggtttcgtctatccagtcaccatagatcctgctgatcttgtcagggcccttccatttctgaatgggcctctgtacctgcccagacctttggccggcaatggtagaacgctgcgcctgcacgcctagatggtacacgtctgcatgagggagcactgtggtggatgcagcagcggtctctgctggagctttcgcagataccacagcttgcttggagtcgggagttgctgcagcatccctgctgtctatgtcaacaagtcccccaccatacttgtggagttctgaaatgaaattcatgaaaaatgtaagatacatcaggtggggtttttgctgcctcaattaaatgacaaatgaaacatttcaattaacaggactaaattgcaataagtttatctaaagattctcaaaggtgatttaaaatgtaggagaaagatatatacataacagaacaaattgtactctgtaaatctgcaaactgtcaatagctcataaatatagtcaacatccagtaggaatgcatcaggctaaaaatgaccacctctttcagtgtttctactgcatatttcagttttagtgaatactccaatcttgtactaaagaagaaatggagaacatcatgcaagataaaaatgtgcaaatggggaaaaaaaactaactgtccacatgtaaccctgacgcaacagaaagcaaacccttaaaacaaagttaagtgggtagaaactagcaacagatatggtcactaaaccagcatttcattctgactaaatctaagaaatttctttttgaagccaacacttaaactaaacaggctaataagtgaattagactcagatcaacatgtaaactgcaaatgactaataaaagcagaaatattcctaaactgcacaagataaacggtgacactgataattgaatctagaatttagtagaggctcctgaagagcaaatgtaacctgtcaagccaggacttccctcttcaaattcagatatcatcatagtgttctcatcctaggaatataagcgactaaataatgtgatggtcacttaaagaacatgtatgctactgtgctcttagtagccatgatcgtattgtgcgcataactctagaatgcctttctactctgagcaatgaccaagattcaagacatcaaggagttgcctgtatctggcagcaaatgttgtacaaagaggataataatataggtacaaagactggtcactcatctataaacaagtggtgaagtggactgaaacctatatattgtgcagtggtaacaggtcgaccgtgaaaagttcagaaaatacctacactacaagatgatccaacaaacatgacctatgagaaaattgtaaatgttatcgcgattcacagcttgaagtacaaagatgtgtttcaccagcacagcgcagaagcttcactgggacaatgacatgcatattcatttaagttgaagaaacaataagctagaacgatctaagttttgaacgatcacaataccatcacactgggaacttctgaatacttgatatgcgctgaagccaacactagacccaccatcaatgttgtgcttcataatccatatagaatacatggcctcactcatagtctcaaaaagaatagatttaggaatagatttgttgtatagttcagtaaatatgttgggaaggatatattcctgtcctaaaggtgtgctatatacttgatgaataaaacaagatttcaaggtagagctgtgatgcaatgtactagtaaataactaaaacaacacagccctgatgtatatcagagaaacaattgttaatacctagaattgtcacagctatcagggcacaagtgaggttttatgtccaatcaaactaaatctctgatgaaacaaggtcacagatcaaatgaagattgataagttcatcgcacattatggtctaccgaaaatgaaacgaagcaccatccacacactaactacagattcaataactacatattcaaccgtagaacaaatcacaataggctaaattatctctaaaaacacagggtaacatataacaattcaagaatttgacaaatgcatactatgaaacaagcaaactcaccagctgctccatgagcgaagtggcatttgctgccaaaggggcagtacccagtcatctcccacttgttacagatcctcgtcttccagttcgacggcttctgcatcggcccattccccgccgcggcggaggcggaggcggccgcggcggccgcagaattgtagctcccgccaccgccgacgctcggcgagaggctgatcgcgacgctctccctggccttggactgctcgtcgtggaggaacgtgcacgcgtcgccgtaggggcatccctcgtcggtgtagaacttcttgcagtgcctccccttgtaggccctcccggagccgccgccgccgccgccgccgccgccgcccgcgtcgccgccggcggtgggtcccgacgacgtcatgatggggatctggtgctcctccctcgcctccgtggcctcctcgtgcgccgcgacgatctcctgccagttgggcggcggcttgcggagctcctccatgccgtgggcgaagttgcagttggtgacgtaggggcaggtccccgccctgaacttgcagcacagcttcgtcttgaagaacatcttcccgatcgcccgcgacttgctcgtgttcccgccgccttcgccgccgcgggatttcttgcccggaggtggctgctcgctcccggccctcgaggagccgccgccgccgccgtcggcgttccactggctgttgtagtcgtcctcggtggcccatatcccggcgtccccgccctgcgccgccgcgttcgcccaggcgtcggggcccgccgcgtccgggatgatgtggatggcgttggtgtaatccat
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| CDS seq | atggattacaccaacgccatccacatcatcccggacgcggcgggccccgacgcctgggcgaacgcggcggcgcagggcggggacgccgggatatgggccaccgaggacgactacaacagccagtggaacgccgacggcggcggcggcggctcctcgagggccgggagcgagcagccacctccgggcaagaaatcccgcggcggcgaaggcggcgggaacacgagcaagtcgcgggcgatcgggaagatgttcttcaagacgaagctgtgctgcaagttcagggcggggacctgcccctacgtcaccaactgcaacttcgcccacggcatggaggagctccgcaagccgccgcccaactggcaggagatcgtcgcggcgcacgaggaggccacggaggcgagggaggagcaccagatccccatcatgacgtcgtcgggacccaccgccggcggcgacgcgggcggcggcggcggcggcggcggcggcggctccgggagggcctacaaggggaggcactgcaagaagttctacaccgacgagggatgcccctacggcgacgcgtgcacgttcctccacgacgagcagtccaaggccagggagagcgtcgcgatcagcctctcgccgagcgtcggcggtggcgggagctacaattctgcggccgccgcggccgcctccgcctccgccgcggcggggaatgggccgatgcagaagccgtcgaactggaagacgaggatctgtaacaagtgggagatgactgggtactgcccctttggcagcaaatgccacttcgctcatggagcagctgaactccacaagtatggtgggggacttgttgacatagacagcagggatgctgcagcaactcccgactccaagcaagctgtggtatctgcgaaagctccagcagagaccgctgctgcatccaccacagtgctccctcatgcagacgtgtaccatctaggcgtgcaggcgcagcgttctaccattgccggccaaaggtctgggcaggtacagaggcccattcagaaatggaagggccctgacaagatcagcaggatctatggtgactggatagacgaaaccgagtag
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| Protein seq | MDYTNAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDYNSQWNADGGGGGSSRAGSEQPPPGKKSRGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEAREEHQIPIMTSSGPTAGGDAGGGGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGSYNSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYGDWIDETE |
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| Function | Zinc finger CCCH domain-containing protein 56 [UniProtKB/Swiss-Prot:Q84UQ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0003770 | OsLima_08g0003770.01 | Chr08 | 3276892 | 3280150 | - | NAM | ||
| CDS seq | atggattacaccaacgccatccacatcatcccggacgcggcgggccccgacgcctgggcgaacgcggcggcgcagggcggggacgccgggatatgggccaccgaggacgactacaacagccagtggaacgccgacggcggcggcggcggctcctcgagggccgggagcgagcagccacctccgggcaagaaatcccgcggcggcgaaggcggcgggaacacgagcaagtcgcgggcgatcgggaagatgttcttcaagacgaagctgtgctgcaagttcagggcggggacctgcccctacgtcaccaactgcaacttcgcccacggcatggaggagctccgcaagccgccgcccaactggcaggagatcgtcgcggcgcacgaggaggccacggaggcgagggaggagcaccagatccccatcatgacgtcgtcgggacccaccgccggcggcgacgcgggcggcggcggcggcggcggcggcggcggctccgggagggcctacaaggggaggcactgcaagaagttctacaccgacgagggatgcccctacggcgacgcgtgcacgttcctccacgacgagcagtccaaggccagggagagcgtcgcgatcagcctctcgccgagcgtcggcggtggcgggagctacaattctgcggccgccgcggccgcctccgcctccgccgcggcggggaatgggccgatgcagaagccgtcgaactggaagacgaggatctgtaacaagtgggagatgactgggtactgcccctttggcagcaaatgccacttcgctcatggagcagctgaactccacaagtatggtgggggacttgttgacatagacagcagggatgctgcagcaactcccgactccaagcaagctgtggtatctgcgaaagctccagcagagaccgctgctgcatccaccacagtgctccctcatgcagacgtgtaccatctaggcgtgcaggcgcagcgttctaccattgccggccaaaggtctgggcaggtacagaggcccattcagaaatggaagggccctgacaagatcagcaggatctatggtgactggatagacgaaaccgagtag
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| Protein seq | MDYTNAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDYNSQWNADGGGGGSSRAGSEQPPPGKKSRGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEAREEHQIPIMTSSGPTAGGDAGGGGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGSYNSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYGDWIDETE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.170574 | 0.166604 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0159800 | RBH | 0.989239 | 0.816431 | 3.826097 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g06330 | RBH | 0.550347 | 0.640077 | 0.974729 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0159800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004050 | RBH | 0.119331 | 8.849614 | 2.859075 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004110 | RBH | 0.148657 | 0.000000 | 1.580036 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004070 | RBH | 0.519136 | 4.347362 | 2.993951 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0004060 | RBH | 0.0 | 0.221909 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003870 | RBH | 5.019230 | 15.878079 | 6.102273 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0052900 | RBH | 3.5393985 | 7.3794725 | 12.123894 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003720 | RBH | 0.240985 | 0.709039 | 0.340951 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0057600 | RBH | 4.766826 | 7.700333 | 18.736655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003790 | RBH | 0.995478 | 9.851556 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0003630 | RBH | 1.625766 | 5.353290 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003880 | RBH | 0.000000 | 0.493714 | 1.112123 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003820 | RBH | 0.114493 | 5.232744 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003730 | RBH | 0.095513 | 4.364239 | 1.827906 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0003650 | RBH | 4.686070 | 23.430990 | 8.849060 |
