Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0002950 | OGI:08007310 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:2513763-2515306 | ||||||||
| Gene Symbol | OsFbox406, Os_F0075 | ||||||||||
| DNA seq | agtgccatgctaatttgtaccatgcaaaaaatgttggggacaagtttttgtgctgaaaaggtcacgctaaaacataaaaacagcaagcaaaacattatgaagacattactcgtgtgcaggcaggcagttgcatagacaagtcacaagtactactatcaccgaaaggagaaagaatagctgaacaagcttccaacaacatcctggtatcagaatctctaatccagccagctcagcacctcaatcaccaaaatctagatcacctaacaaaacaatttaaacgatgtctgtcaaatgcctgaaacataaaccactgtaggcataagcatgcatggacaatttaaagaaacataccatgctaaaccggaagggacttgatttcaatttagggagaaagctaatattcacaaacaagctcctgacaatgatgtgcactccatttctctccctgagggtagaagattgtaagctttgtaagtttgtcacaattaaacatttcttctgtttcTttgcaaggaggatctattgctgctgcagcatttggatactcctcatagtcatcagctccacactgatgataataatgaaaagaaaccattaaactgaactcgtgggcaaaagtagctatgtgggaaggggtgaggtattatatcttgccttatcaagttgcaggcaaagttttctatgttaggagagcggtgaagcaagaagagtagtgggtagcagccatctctcaaaaaccactcaccaagcttcaaaagtttcaagttgctgaatgtctcgcacctcaaaagactacgtatcactacctttgacagcatctgccaacaagtccaaaaaagttttagaaaaacatatataaacaaagacatgagtaactgaaaattcaaaggaggtagcgtacatcatcatagacagatgggcaacgcagctccaaccaagtgacatttgaaagagcactgagactattgcagtcaacagcaaaattttgaaaagagagtccaaaaaggtaaactgtagcctttttcactgatgacacatccacgagctgaatatttctttttggaattaaatctcctctagatgcagagtaactaagtttgACatatcTatcacaagatgctcaaaTtttctgtggaaatgttcaaaggtttctgtactgctaatgaCcaatctcttcaaTGtggtcgaggaaaacatggtgacattgatggcatgtccagatcctctaaaactgggcaaccggaagagagtttcttgataaaacagttatctatagagaaatggcaaaggtgcagcatgcataagtgtgccaaCctgaacggaagaggataaccatctatggaaagaagatttgtgccagaatgctccattatgccaaaagcccgggcattgctcctaagggcatgacgaacccatGgatggatgtcagaataatcaatggaatcatcagagcggttgcaggtgtcagaaatcgaaagatcatccagtggtagagggctgcggcacaggagcagattgtcgacaaatttcatgaaactttgcat
More
|
||||||||||
| CDS seq | atgcaaagtttcatgaaatttgtcgacaatctgctcctgtgccgcagccctctaccactggatgatctttcgatttctgacacctgcaaccgctctgatgattccattgattattctgacatccatcCatgggttcgtcatgcccttaggagcaatgcccgggcttttggcataatggagcattctggcacaaatcttctttccatagatggttatcctcttccgttcagttttagaggatctggacatgccatcaatgtcaccatgttttcctcgaccaCAttgaagagattgGtcattagcagtacagaaacctttgaacatttccacagaaaAtttgagcatcttgtgatAgatataggagatttaattccaaaaagaaatattcagctcgtggatgtgtcatcagtgaaaaaggctacagtttacctttttggactctcttttcaaaattttgctgttgactgcaatagtctcagtgctctttcaaatgtcacttggttggagctgcgttgcccatctgtctatgatgatatgctgtcaaaggtagtgatacgtagtcttttgaggtgcgagacattcagcaacttgaaacttttgaagcttggtgagtggtttttgagagatggctgctacccactactcttcttgcttcaccgctctcctaacatagaaaactttgcctgcaacttgataaggcaagatataatacctcaccccttcccacatagctacttttgcccacgagttcagtttaatggtttcttttcattattatcatcagtgtggagctga
More
|
||||||||||
| Protein seq | MQSFMKFVDNLLLCRSPLPLDDLSISDTCNRSDDSIDYSDIHPWVRHALRSNARAFGIMEHSGTNLLSIDGYPLPFSFRGSGHAINVTMFSSTTLKRLVISSTETFEHFHRKFEHLVIDIGDLIPKRNIQLVDVSSVKKATVYLFGLSFQNFAVDCNSLSALSNVTWLELRCPSVYDDMLSKVVIRSLLRCETFSNLKLLKLGEWFLRDGCYPLLFLLHRSPNIENFACNLIRQDIIPHPFPHSYFCPRVQFNGFFSLLSSVWS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002950 | OsLima_08g0002950.01 | Chr08 | 2513763 | 2515306 | - | NAM | ||
| CDS seq | atgcaaagtttcatgaaatttgtcgacaatctgctcctgtgccgcagccctctaccactggatgatctttcgatttctgacacctgcaaccgctctgatgattccattgattattctgacatccatcCatgggttcgtcatgcccttaggagcaatgcccgggcttttggcataatggagcattctggcacaaatcttctttccatagatggttatcctcttccgttcagttttagaggatctggacatgccatcaatgtcaccatgttttcctcgaccaCAttgaagagattgGtcattagcagtacagaaacctttgaacatttccacagaaaAtttgagcatcttgtgatAgatataggagatttaattccaaaaagaaatattcagctcgtggatgtgtcatcagtgaaaaaggctacagtttacctttttggactctcttttcaaaattttgctgttgactgcaatagtctcagtgctctttcaaatgtcacttggttggagctgcgttgcccatctgtctatgatgatatgctgtcaaaggtagtgatacgtagtcttttgaggtgcgagacattcagcaacttgaaacttttgaagcttggtgagtggtttttgagagatggctgctacccactactcttcttgcttcaccgctctcctaacatagaaaactttgcctgcaacttgataaggcaagatataatacctcaccccttcccacatagctacttttgcccacgagttcagtttaatggtttcttttcattattatcatcagtgtggagctga
More
|
|||||||
| Protein seq | MQSFMKFVDNLLLCRSPLPLDDLSISDTCNRSDDSIDYSDIHPWVRHALRSNARAFGIMEHSGTNLLSIDGYPLPFSFRGSGHAINVTMFSSTTLKRLVISSTETFEHFHRKFEHLVIDIGDLIPKRNIQLVDVSSVKKATVYLFGLSFQNFAVDCNSLSALSNVTWLELRCPSVYDDMLSKVVIRSLLRCETFSNLKLLKLGEWFLRDGCYPLLFLLHRSPNIENFACNLIRQDIIPHPFPHSYFCPRVQFNGFFSLLSSVWS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.054080 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0149100 | SBH | 0.000000 | 0.0 | 1.295778 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05460 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0149100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003190 | RBH | 0.149674 | 0.000000 | 0.522377 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003240 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003210 | RBH | 0.0 | 0.0 | 1.669322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003200 | RBH | 0.036983 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003020 | RBH | 0.000000 | 4.327804 | 1.846253 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0043900 | SBH | 0.494926 | 0.443432 | 3.737089 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002890 | RBH | 0.123988 | 0.0 | 0.088107 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0047400 | RBH | 1.342149 | 2.490696 | 4.4488965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0002090 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002990 | RBH | 0.000000 | 1.495984 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002790 | RBH | 0.0 | 7.483784 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003040 | RBH | 0.386889 | 0.429131 | 0.252279 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002960 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002930 | RBH | 0.242468 | 0.000000 | 0.974072 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002800 | RBH | 0.000000 | 1.769461 | 1.231458 |
