Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0002790 | OGI:08006310 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:2261512-2265451 | ||||||||
| Gene Symbol | OsHDMA703, HDMA703, OsPAO10, PAO10, Hd18 | ||||||||||
| DNA seq | tgagaagcaatgcgtttatattacgaaacgccaaccagcttaactgtggtatctaacaaaggaaataggatggttccagggagaaaacaaagaataatgggggcaaaaggcaaccaaactcaatttaatgaagccaaacaaactggtccagaagtgagcttatccaccatttcagcaacacataaactgccagataccaatataggaacaacatctagaaaaaaaagggggaagatgaaaacaatagtagcctccctaaaagaatccaatagtacctgcaaccaaactattcattgaaatttatcagtgcatctaagttctaatctactgagggaggccacatgactgatgactgccatgttacaaatggcagggaggatcttggttttcctgccccacgtctaaagtttgcacactagagaacaatctatgagccagtttttggcccaaaccaaaagagaaaatatggggttcttttctacaaacaagaataaagtagcggtacagatcaaagtccggttttcaagctcttcggtccctgcaaccttttcctggctttctgagctctcgagatgctagaaatcagatgactacatacatcgtatgtactgtcgtaacccattagtttaacaccaagatctttgcatagaactgctatcctacttttatcatcgtcacattccattagttcagttgcctgctcttgcgagacggtggcgtataaataaaacacctcttggtctatcttctcagccacagggtcctgatccttctgattaccctttactttgcgtttcttggaaggcagaagcaaaggcttctcaagtgtaatcctagccaatcccggagcctgttcctcctcaggtgtaatataggagaacacgaacgagaatcttccacattctagatctggctccatgaaaaggtcgtccagtacattatttataagtctgatgcttttctgcagggcatacttcttataatcagaattcaatctactttccgaagcatggagaatcttggaagcttcccttagtccactcaataaagctccatgcattgttgcagggtatgcacgatttgttgcttctccagcaaagaataaccggtcattgacgctctcagcgagaatatcatagtcagtgccagaagacccaactctgatgtgagagtatgaacctgagcaaagaggatcactaccccatcttgtgcaacatgattgaatgggatcaggcactgtaacacctttggggccatagatacctggaaaaagtcacaaaagtgagttcattggttattgaatagaaaaccaaaaaaaaaaattatataatgagatattggaaactaagcacatttctcctagttgtttttttaccctttccattacaaaccacaaattcatattacaagataataatggaaataattcacattctccaaatcatgtttcactctgtctgatgtttcattatttgcaaaccattccatattcatcacatagtttatttgcccccattggtgcacactgcacatcaaactagtatgatatagtgcaaaagaatagcatattctttatttatttaaactctaaagtaaatgaaaaaaatgtactagtcatcgcatttgtaacagaatctttaaaatatctcattatataatttccttcccttccattccttctttccatctgtatactcttaatctaaaaggagcacttcagtgttcaaacaccatccaagttccaatccatattaataactctataataaaatttactggttagttgaggattgtagatggtaagacagtacacagatagtgtacacaatccagagttaaTttttacagagctgttgacttgtattattagtataaacacttcaagttaaatcaacacaacatggcactccaataaattatggaatcggcatgactctactaggttccaaatatacccttgatggttctaatgcaaccatccaatgcatatggcagggactacttgaattaatacaacacatccgattgtcatagcaaaatttaaatctaatcttaaatcaacacatgacacattgttctttttctttaatttatgtgacaccttgttatgccattccataattcattCccccattttctaatatgcaaggagttcatacttcatacttaaagcttatccatactccatccttgttagaagacttcaaaaaattatggtcttatggagatacattggaatgtaagttcagtgattacctttaagaataccaaggaccctatgaagtgctacagcaggatcaaCcttttcaaactccaaagcagcttctcccgcaacaagtgcgataagtaccgcaccaccagagacagtgtggtagctgtagaagagaaagaactcgccacgcttgctcctctccttattcaaacacccaaatgtgtcaatctcctcatcccaaaatacatggggaaacaccatggcgactttgttcaacaacccaaaccccaacctctggattgcctcaagcttcctctctggcaactccggttcaaaaatgatgctcctgctcttgagcactccaagtggagcagtgcagagtgccatgtcagccttgaaaacctggcctccttccacggtgatgctcaccccatcctccccatgctcaatccgcttcaccgtcttctcatacaacaccggcacaccatcgcacaatgcgtgtaccagcctcgcattccctccggctaggaagcaatggtctCcccccatctcatactggtcatcctggtcccagtgcgcgagcgagagctccgataggcagccggcattggagaattccaggttagccaaatgccagtccagaacctccctctcctcgacgcttttcgccaccttgtaaaagcgtctcagcctctctatcccttcccctagcgagatcccctcggccgccttcttgagatactctcgcagccgggtggcgtgttctagaagcgtgttgaacaccagatccatgctcctgtccagcttcatgtccacggtgcggccgtcgtggtggtagagcgggcaactgtctcgcaccttgtggagtggaatcccgagctgcctggcgagcacgccgagcgggttggcgtggatgccggtgatgacgctgccgccgagctcaacggcggcctggtccccgccgagatgagtggtgtagacgcggccgccggggcgggcgcggccctcgaggacgagcacgcggaggccgaatcggagcagctggcgcgcggcggcgaggccagcgagaccggcgccgacgacgagcacggatgcggcgaggcgctgcggcgcatcgggtggtggggaggcggggaacgcggcggagacgccgaagttgatgtggccctcccgggcgaggaacccgtgcgccacggcgacgaggttgtcgtagctggcggcgacggtctcctgcacgcgcgagcgcgggagcggcacccgcgggtcggcgcgccacgaggcgaggatgtggttgcggacgacgatgtagtcgttgggggcggcggcgacgggggccggcaggaggggccgctcggcGgggagcagctcgtcaatggggaagcccagcgagagcgctatgagagcctccgtctccgtctcccgctgccgctcgtcggcggagaggcggcgcagccggctgatccgccgcgacctggcgttcccgaggtaggactccagctcggcgtccaccagcgactcgtcgtacgacgacctcgccgtcaacgccgccctcctcgccggccgccgcgacgacgacgacatcgccgccgacgaggttggggtttctctcgcttcgcggaggcgaggggagaagagaagaggtgggtgaggtggggtttcgactttaatgggggggaggctgactggtgggcccgcagtcgtcagctctggactgtggtttgtacccat
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| CDS seq | atgggtacaaaccacagtccagagctgacgactgcgggcccaccagtcagcctcccccccattaaagtcgaaaccccacctcacccacctcttctcttctcccctcgcctccgcgaagcgagagaaaccccaacctcgtcggcggcgatgtcgtcgtcgtcgcggcggccggcgaggagggcggcgttgacggcgaggtcgtcgtacgacgagtcgctggtggacgccgagctggagtcctacctcgggaacgccaggtcgcggcggatcagccggctgcgccgcctctccgccgacgagcggcagcgggagacggagacggaggctctcatagcgctctcgctgggcttccccattgacgagctgctcccCgccgagcggcccctcctgccggcccccgtcgccgccgcccccaacgactacatcgtcgtccgcaaccacatcctcgcctcgtggcgcgccgacccgcgggtgccgctcccgcgctcgcgcgtgcaggagaccgtcgccgccagctacgacaacctcgtcgccgtggcgcacgggttcctcgcccgggagggccacatcaacttcggcgtctccgccgcgttccccgcctccccaccacccgatgcgccgcagcgcctcgccgcatccgtgctcgtcgtcggcgccggtctcgctggcctcgccgccgcgcgccagctgctccgattcggcctccgcgtgctcgtcctcgagggccgcgcccgccccggcggccgcgtctacaccactcatctcggcggggaccaggccgccgttgagctcggcggcagcgtcatcaccggcatccacgccaacccgctcggcgtgctcgccaggcagctcgggattccactccacaaggtgcgagacagttgcccgctctaccaccacgacggccgcaccgtggacatgaagctggacaggagcatggatctggtgttcaacacgcttctagaacacgccacccggctgcgagagtatctcaagaaggcggccgaggggatctcgctaggggaagggatagagaggctgagacgcttttacaaggtggcgaaaagcgtcgaggagagggaggttctggactggcatttggctaacctggaattctccaatgccggctgcctatcggagctctcgctcgcgcactgggaccaggatgaccagtatgagatgggggGagaccattgcttcctagccggagggaatgcgaggctggtacacgcattgtgcgatggtgtgccggtgttgtatgagaagacggtgaagcggattgagcatggggaggatggggtgagcatcaccgtggaaggaggccaggttttcaaggctgacatggcactctgcactgctccacttggagtgctcaagagcaggagcatcatttttgaaccggagttgccagagaggaagcttgaggcaatccagaggttggggtttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgggatgaggagattgacacatttgggtgtttgaataaggagaggagcaagcgtggcgagttctttctcttctacagctaccacactgtctctggtggtgcggtacttatcgcacttgttgcgggagaagctgctttggagtttgaaaagGttgatcctgctgtagcacttcatagggtccttggtattcttaaaggtatctatggccccaaaggtgttacagtgcctgatcccattcaatcatgttgcacaagatggggtagtgatcctctttgctcaggttcatactctcacatcagagttgggtcttctggcactgactatgatattctcgctgagagcgtcaatgaccggttattctttgctggagaagcaacaaatcgtgcataccctgcaacaatgcatggagctttattgagtggactaagggaagcttccaagattctccatgcttcggaaagtagattgaattctgattataagaagtatgccctgcagaaaagcatcagacttataaataatgtactggacgaccttttcatggagccagatctagaatgtggaagattctcgttcgtgttctcctatattacacctgaggaggaacaggctccgggattggctaggattacacttgagaagcctttgcttctgccttccaagaaacgcaaagtaaagggtaatcagaaggatcaggaccctgtggctgagaagatagaccaagaggtgttttatttatacgccaccgtctcgcaagagcaggcaactgaactaatggaatgtgacgatgataaaagtaggatagcagttctatgcaaagatcttggtgttaaactaatgggttacgacagtacatacgatgtatgtagtcatctgatttctagcatctcgagagctcagaaagccaggaaaaggttgcagggaccgaagagcttgaaaaccggactttga
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| Protein seq | MGTNHSPELTTAGPPVSLPPIKVETPPHPPLLFSPRLREARETPTSSAAMSSSSRRPARRAALTARSSYDESLVDAELESYLGNARSRRISRLRRLSADERQRETETEALIALSLGFPIDELLPAERPLLPAPVAAAPNDYIVVRNHILASWRADPRVPLPRSRVQETVAASYDNLVAVAHGFLAREGHINFGVSAAFPASPPPDAPQRLAASVLVVGAGLAGLAAARQLLRFGLRVLVLEGRARPGGRVYTTHLGGDQAAVELGGSVITGIHANPLGVLARQLGIPLHKVRDSCPLYHHDGRTVDMKLDRSMDLVFNTLLEHATRLREYLKKAAEGISLGEGIERLRRFYKVAKSVEEREVLDWHLANLEFSNAGCLSELSLAHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREASKILHASESRLNSDYKKYALQKSIRLINNVLDDLFMEPDLECGRFSFVFSYITPEEEQAPGLARITLEKPLLLPSKKRKVKGNQKDQDPVAEKIDQEVFYLYATVSQEQATELMECDDDKSRIAVLCKDLGVKLMGYDSTYDVCSHLISSISRAQKARKRLQGPKSLKTGL |
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| Function | Lysine-specific histone demethylase 1 homolog 2 [UniProtKB/Swiss-Prot:Q6YYZ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002790 | OsLima_08g0002790.01 | Chr08 | 2261512 | 2265451 | - | NAM | ||
| CDS seq | atgggtacaaaccacagtccagagctgacgactgcgggcccaccagtcagcctcccccccattaaagtcgaaaccccacctcacccacctcttctcttctcccctcgcctccgcgaagcgagagaaaccccaacctcgtcggcggcgatgtcgtcgtcgtcgcggcggccggcgaggagggcggcgttgacggcgaggtcgtcgtacgacgagtcgctggtggacgccgagctggagtcctacctcgggaacgccaggtcgcggcggatcagccggctgcgccgcctctccgccgacgagcggcagcgggagacggagacggaggctctcatagcgctctcgctgggcttccccattgacgagctgctcccCgccgagcggcccctcctgccggcccccgtcgccgccgcccccaacgactacatcgtcgtccgcaaccacatcctcgcctcgtggcgcgccgacccgcgggtgccgctcccgcgctcgcgcgtgcaggagaccgtcgccgccagctacgacaacctcgtcgccgtggcgcacgggttcctcgcccgggagggccacatcaacttcggcgtctccgccgcgttccccgcctccccaccacccgatgcgccgcagcgcctcgccgcatccgtgctcgtcgtcggcgccggtctcgctggcctcgccgccgcgcgccagctgctccgattcggcctccgcgtgctcgtcctcgagggccgcgcccgccccggcggccgcgtctacaccactcatctcggcggggaccaggccgccgttgagctcggcggcagcgtcatcaccggcatccacgccaacccgctcggcgtgctcgccaggcagctcgggattccactccacaaggtgcgagacagttgcccgctctaccaccacgacggccgcaccgtggacatgaagctggacaggagcatggatctggtgttcaacacgcttctagaacacgccacccggctgcgagagtatctcaagaaggcggccgaggggatctcgctaggggaagggatagagaggctgagacgcttttacaaggtggcgaaaagcgtcgaggagagggaggttctggactggcatttggctaacctggaattctccaatgccggctgcctatcggagctctcgctcgcgcactgggaccaggatgaccagtatgagatgggggGagaccattgcttcctagccggagggaatgcgaggctggtacacgcattgtgcgatggtgtgccggtgttgtatgagaagacggtgaagcggattgagcatggggaggatggggtgagcatcaccgtggaaggaggccaggttttcaaggctgacatggcactctgcactgctccacttggagtgctcaagagcaggagcatcatttttgaaccggagttgccagagaggaagcttgaggcaatccagaggttggggtttgggttgttgaacaaagtcgccatggtgtttccccatgtattttgggatgaggagattgacacatttgggtgtttgaataaggagaggagcaagcgtggcgagttctttctcttctacagctaccacactgtctctggtggtgcggtacttatcgcacttgttgcgggagaagctgctttggagtttgaaaagGttgatcctgctgtagcacttcatagggtccttggtattcttaaaggtatctatggccccaaaggtgttacagtgcctgatcccattcaatcatgttgcacaagatggggtagtgatcctctttgctcaggttcatactctcacatcagagttgggtcttctggcactgactatgatattctcgctgagagcgtcaatgaccggttattctttgctggagaagcaacaaatcgtgcataccctgcaacaatgcatggagctttattgagtggactaagggaagcttccaagattctccatgcttcggaaagtagattgaattctgattataagaagtatgccctgcagaaaagcatcagacttataaataatgtactggacgaccttttcatggagccagatctagaatgtggaagattctcgttcgtgttctcctatattacacctgaggaggaacaggctccgggattggctaggattacacttgagaagcctttgcttctgccttccaagaaacgcaaagtaaagggtaatcagaaggatcaggaccctgtggctgagaagatagaccaagaggtgttttatttatacgccaccgtctcgcaagagcaggcaactgaactaatggaatgtgacgatgataaaagtaggatagcagttctatgcaaagatcttggtgttaaactaatgggttacgacagtacatacgatgtatgtagtcatctgatttctagcatctcgagagctcagaaagccaggaaaaggttgcagggaccgaagagcttgaaaaccggactttga
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| Protein seq | MGTNHSPELTTAGPPVSLPPIKVETPPHPPLLFSPRLREARETPTSSAAMSSSSRRPARRAALTARSSYDESLVDAELESYLGNARSRRISRLRRLSADERQRETETEALIALSLGFPIDELLPAERPLLPAPVAAAPNDYIVVRNHILASWRADPRVPLPRSRVQETVAASYDNLVAVAHGFLAREGHINFGVSAAFPASPPPDAPQRLAASVLVVGAGLAGLAAARQLLRFGLRVLVLEGRARPGGRVYTTHLGGDQAAVELGGSVITGIHANPLGVLARQLGIPLHKVRDSCPLYHHDGRTVDMKLDRSMDLVFNTLLEHATRLREYLKKAAEGISLGEGIERLRRFYKVAKSVEEREVLDWHLANLEFSNAGCLSELSLAHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREASKILHASESRLNSDYKKYALQKSIRLINNVLDDLFMEPDLECGRFSFVFSYITPEEEQAPGLARITLEKPLLLPSKKRKVKGNQKDQDPVAEKIDQEVFYLYATVSQEQATELMECDDDKSRIAVLCKDLGVKLMGYDSTYDVCSHLISSISRAQKARKRLQGPKSLKTGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.070185 | 0.041231 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0143400 | RBH | 0.628245 | 0.092083 | 3.200364 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04780 | RBH | 0.404755 | 0.059004 | 0.816233 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0143400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002960 | RBH | 0.611554 | 7.091105 | 4.193636 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003010 | RBH | 0.130776 | 1.093538 | 0.705121 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003000 | RBH | 0.711365 | 7.186929 | 3.396807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002980 | RBH | 0.254006 | 0.173912 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002780 | RBH | 3.501891 | 14.506903 | 10.087440 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0036000 | RBH | 8.654558 | 26.9634325 | 44.049158 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002650 | RBH | 0.386204 | 0.413926 | 0.972619 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0040500 | RBH | 12.393404 | 44.3452185 | 52.9634 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002810 | RBH | 0.193495 | 5.334223 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002630 | RBH | 0.0 | 8.864512 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002830 | RBH | 0.713297 | 0.421799 | 1.301919 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002740 | RBH | 0.319689 | 3.567695 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002770 | RBH | 0.323091 | 1.738604 | 1.504037 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002650 | RBH | 2.176007 | 8.718977 | 4.547970 |
