Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0002210 | OGI:08005050 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:1828421-1831576 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaatagcccatctgacatctttgccaaaccctaaccgcctctggctcggcggcggcggcggcggctcgtccccgaagagcagccggcgttggagaggatcggtgttcccgctacggtatgtacgctctctcacgccaatcaatcctctatattcggatgcaattcccaatgcaattgtgaacgttcagaatttttagattaccctcagtcttatatcatctcatctggcagcggcggcaaagatcgatggtggacacggatgagcggtggcgcgctgcggtgattggcggtggtggagatgctgctactgcgacggagcctagtctgcccgccgcgataacgcggcgtctgcgggagctcgcatgggaggacaaggacaaggagaaggctcgcacggtcgttgatctagtcgactccgaaacccctatcgaatgcgatcacgaagagggtcatctttgccctagtccctgctccgacattccttctagtaagtatttacctcaggaaatatccctctccgtttgttcattgttttgccggatacatgattttttttttcaaaattccctagtggttgcagctagcggtggtggtggtggcaatgaagagatgggcaaggtgaattgtaatgagaagcacacatatggtgaggagaaggagaaggagaaggagaaggagaaggtggtggagactaagtcggagctgaagcctaaaccgaggaggaagaattgggaggaggaggagctcacatgggaggagaaggtgttgaaggttcttcacatggttcgtatatgggaggtgactgaattcgaccccaagatggagtggtttgagcctacccgcctttgcctcttcaacaccgccttcttcgacctcgacaaagagtgtgagtacatgcattcaccatgcatcaatccctttacctcaattccttgtatatgatctaattcaacttaacattcgtatgcggcctctctatccattcatcacatttgttgatggatttattttagtgtgtaaaaaccatacatattcttttgtctgattgaagtctcatgtctctgattttacagctaaggctgggcttgggccaccgattcactcgctcacttcctctgattatcgccatttggagacctccatgaatatcatttcaatcaaggttgtcgaatctgacgtgggttaccctatcagcatcttcggcaccgtgttagcgagagatcagtatgactataggtgtgtgtatttgttcaggcgtagcagggacaatccccagatcatcacctcaccggtttgtattcgattcgtcctccctcttactacactgccattcactactcaatagcatatttccttatttttatgagattagactgtttctgtcaatatgttctggttttaagttttaccgggatggaataatggaaaccatctacgtggtcaaaacaaccgtataaaagttcagggaggtgatgttatagaaccatgtaaaatttaggatcaaactcaatccgttttgtgagatatgaaattgagaaaccaggaaaaaataagtccttttcttgctgtttgcctgtttcatatctcacaaactagattgggtttttttcttgaacttttacatagttgcataatatcacctcacccacacatgagataattttcagtattattggaaatatcaaatgtttatcaagtggtttgcacgtctgcacatattttctcttgctttaacctgttataaacactgtaagaacaaatcggcttggctacataccaccaaaagattcatcaattcatctcagaaaatgcatttcactctgttatattctttttttcttgcacattaaatcgtgtaaatgaacagttggtcctcaatgtactagtgagcaagtttgattcacacatacacttaatgttttatctcattttgtgaaaatagaaatgaggcatataatgtgattaacagggcatgatggaagttgacagtgctaaattatcaagtcttggatcttctaatgacattaactgaattctcataagttgcttatgattaaattgcatgatctagagaagtatatctttgtcatttaatcggtccatactgcccataaaatgcatgagttggctttcatttttgtttgatcttttagttagactatgtcttattttagtctaacaagcacacatacatgagagaccgaccaatttatagaaattgggttggtgtcagactcaccaccaccgaaggttttggtgagcaactgttttggttgtaaacacttaaatatcaaattgttggtatcttctcaagtttctgttgaacctggtcttgacatcatctgaattgtgcttgattactgagcttggttccttttatgtaattttgttatgttatttccctaaatccctttgcaggaggacatgctaactttgacaggcccaaagcgaggtcttggtgcaaaagattatatgtttttcgagttcaatttaaagatgaagggcgatgatggagttgacaaagattttagcaaaggtttgctgccatacaatgtcgtctgtcgaacagggagactcgagactttacatctcaggagctggctaagtgtagtggaatttgcattcgtgactgttcaatatgccgttgaagctacccttgcggtgaaaatgttagggggggcatctgttttcactggtagagtgactgcttggactactggaaatgatgaagatgaaatagttctctatgacagtgaagttgcagacactcggacagagattacagctgatggatctgttcagctaaatcgtggtttagtagttgtcccattggataaggagctggtgctcaatatttgtgtgtttgagggtgaagatgaagctcaaagctttgagttcattctagggcactatgatgaagaatttacctgcaagcaaggctgttatgagtttcaagttaatattatttggacggcagtaaagactcggcgacggcccaatatgtggaagcgcattggttgcattgtactgttactttgaaggctgtaaaaagggtgcacttatcagagtcatatatgatcggtgcactcaaaacatatctatctatccataaaatttcctaagaatattctcttagatatgtattgctagtctca
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| CDS seq | atggtggacacggatgagcggtggcgcgctgcggtgattggcggtggtggagatgctgctactgcgacggagcctagtctgcccgccgcgataacgcggcgtctgcgggagctcgcatgggaggacaaggacaaggagaaggctcgcacggtcgttgatctagtcgactccgaaacccctatcgaatgcgatcacgaagagggtcatctttgccctagtccctgctccgacattccttctatggttgcagctagcggtggtggtggtggcaatgaagagatgggcaaggtgaattgtaatgagaagcacacatatggtgaggagaaggagaaggagaaggagaaggagaaggtggtggagactaagtcggagctgaagcctaaaccgaggaggaagaattgggaggaggaggagctcacatgggaggagaaggtgttgaaggttcttcacatggttcgtatatgggaggtgactgaattcgaccccaagatggagtggtttgagcctacccgcctttgcctcttcaacaccgccttcttcgacctcgacaaagagtctaaggctgggcttgggccaccgattcactcgctcacttcctctgattatcgccatttggagacctccatgaatatcatttcaatcaaggttgtcgaatctgacgtgggttaccctatcagcatcttcggcaccgtgttagcgagagatcagtatgactataggtgtgtgtatttgttcaggcgtagcagggacaatccccagatcatcacctcaccggaggacatgctaactttgacaggcccaaagcgaggtcttggtgcaaaagattatatgtttttcgagttcaatttaaagatgaagggcgatgatggagttgacaaagattttagcaaaggtttgctgccatacaatgtcgtctgtcgaacagggagactcgagactttacatctcaggagctggctaagtgtagtggaatttgcattcgtgactgttcaatatgccgttgaagctacccttgcggtgaaaatgttagggggggcatctgttttcactggtagagtgactgcttggactactggaaatgatgaagatgaaatagttctctatgacagtgaagttgcagacactcggacagagattacagctgatggatctgttcagctaaatcgtggtttagtagttgtcccattggataaggagctggtgctcaatatttgtgtgtttgagggtgaagatgaagctcaaagctttgagttcattctagggcactatgatgaagaatttacctgcaagcaaggctgttatgagtttcaagttaatattatttggacggcagtaaagactcggcgacggcccaatatgtggaagcgcattggttgcattgtactgttactttga
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| Protein seq | MVDTDERWRAAVIGGGGDAATATEPSLPAAITRRLRELAWEDKDKEKARTVVDLVDSETPIECDHEEGHLCPSPCSDIPSMVAASGGGGGNEEMGKVNCNEKHTYGEEKEKEKEKEKVVETKSELKPKPRRKNWEEEELTWEEKVLKVLHMVRIWEVTEFDPKMEWFEPTRLCLFNTAFFDLDKESKAGLGPPIHSLTSSDYRHLETSMNIISIKVVESDVGYPISIFGTVLARDQYDYRCVYLFRRSRDNPQIITSPEDMLTLTGPKRGLGAKDYMFFEFNLKMKGDDGVDKDFSKGLLPYNVVCRTGRLETLHLRSWLSVVEFAFVTVQYAVEATLAVKMLGGASVFTGRVTAWTTGNDEDEIVLYDSEVADTRTEITADGSVQLNRGLVVVPLDKELVLNICVFEGEDEAQSFEFILGHYDEEFTCKQGCYEFQVNIIWTAVKTRRRPNMWKRIGCIVLLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002210 | OsLima_08g0002210.01 | Chr08 | 1828421 | 1831576 | + | NAM | ||
| CDS seq | atggtggacacggatgagcggtggcgcgctgcggtgattggcggtggtggagatgctgctactgcgacggagcctagtctgcccgccgcgataacgcggcgtctgcgggagctcgcatgggaggacaaggacaaggagaaggctcgcacggtcgttgatctagtcgactccgaaacccctatcgaatgcgatcacgaagagggtcatctttgccctagtccctgctccgacattccttctatggttgcagctagcggtggtggtggtggcaatgaagagatgggcaaggtgaattgtaatgagaagcacacatatggtgaggagaaggagaaggagaaggagaaggagaaggtggtggagactaagtcggagctgaagcctaaaccgaggaggaagaattgggaggaggaggagctcacatgggaggagaaggtgttgaaggttcttcacatggttcgtatatgggaggtgactgaattcgaccccaagatggagtggtttgagcctacccgcctttgcctcttcaacaccgccttcttcgacctcgacaaagagtctaaggctgggcttgggccaccgattcactcgctcacttcctctgattatcgccatttggagacctccatgaatatcatttcaatcaaggttgtcgaatctgacgtgggttaccctatcagcatcttcggcaccgtgttagcgagagatcagtatgactataggtgtgtgtatttgttcaggcgtagcagggacaatccccagatcatcacctcaccggaggacatgctaactttgacaggcccaaagcgaggtcttggtgcaaaagattatatgtttttcgagttcaatttaaagatgaagggcgatgatggagttgacaaagattttagcaaaggtttgctgccatacaatgtcgtctgtcgaacagggagactcgagactttacatctcaggagctggctaagtgtagtggaatttgcattcgtgactgttcaatatgccgttgaagctacccttgcggtgaaaatgttagggggggcatctgttttcactggtagagtgactgcttggactactggaaatgatgaagatgaaatagttctctatgacagtgaagttgcagacactcggacagagattacagctgatggatctgttcagctaaatcgtggtttagtagttgtcccattggataaggagctggtgctcaatatttgtgtgtttgagggtgaagatgaagctcaaagctttgagttcattctagggcactatgatgaagaatttacctgcaagcaaggctgttatgagtttcaagttaatattatttggacggcagtaaagactcggcgacggcccaatatgtggaagcgcattggttgcattgtactgttactttga
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| Protein seq | MVDTDERWRAAVIGGGGDAATATEPSLPAAITRRLRELAWEDKDKEKARTVVDLVDSETPIECDHEEGHLCPSPCSDIPSMVAASGGGGGNEEMGKVNCNEKHTYGEEKEKEKEKEKVVETKSELKPKPRRKNWEEEELTWEEKVLKVLHMVRIWEVTEFDPKMEWFEPTRLCLFNTAFFDLDKESKAGLGPPIHSLTSSDYRHLETSMNIISIKVVESDVGYPISIFGTVLARDQYDYRCVYLFRRSRDNPQIITSPEDMLTLTGPKRGLGAKDYMFFEFNLKMKGDDGVDKDFSKGLLPYNVVCRTGRLETLHLRSWLSVVEFAFVTVQYAVEATLAVKMLGGASVFTGRVTAWTTGNDEDEIVLYDSEVADTRTEITADGSVQLNRGLVVVPLDKELVLNICVFEGEDEAQSFEFILGHYDEEFTCKQGCYEFQVNIIWTAVKTRRRPNMWKRIGCIVLLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050453 | 0.146776 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0133600 | RBH | 1.091430 | 3.057669 | 3.351169 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g03990 | RBH | 0.692222 | 1.928758 | 0.809056 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0133600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002330 | RBH | 1.252188 | 3.095974 | 4.126920 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002380 | RBH | 0.000000 | 0.000000 | 2.412062 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002380 | RBH | 1.841305 | 2.583599 | 9.516046 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002350 | RBH | 0.124168 | 0.159271 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002190 | RBH | 7.871861 | 16.414669 | 21.078491 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0027700 | RBH | 4.996392 | 9.6068475 | 8.9487645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002070 | RBH | 0.059799 | 0.247833 | 1.877039 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0032200 | RBH | 6.081602 | 8.2226295 | 17.9277455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002210 | RBH | 0.468396 | 5.507373 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002040 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002250 | RBH | 0.745950 | 0.290649 | 1.609625 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002160 | RBH | 0.239558 | 5.068740 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002180 | RBH | 0.930466 | 5.446588 | 3.782520 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002100 | RBH | 2.031004 | 14.368293 | 7.738471 |
