Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0000960 | OGI:08001620 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:804935-807314 | ||||||||
| Gene Symbol | MADS26, OsMADS26, FDRMADS3, RMADS220 | ||||||||||
| DNA seq | aagcaagagatagggataaggggaagaggaggaagaaggaggaggtgtagggagaaaccggagcaacctcgaagctagtccaaactagtgggaggttgtctttccggcaagccggagcccggagctatcgatcatcaagctttctaCcccgaccgacgaggaagaagacgactgatcaattgatcaaaccgatctctccatagctaggaggagaggaggaagaagagggggagaggagacttatcttgatcgatggcgcgaggcaaggtgcagctccgtcgcatcgagaacccggttcaccgtcaggtcaccttctgcaagcgccgtgccggcctgctgaagaaggccagggagctctccatcctctgcgaggccgacatcggcatcatcatcttctccgcccacggcaagctctacgacctcgccaccaccgggtaccttcagcttcttctccatcaaatcaaattaaaaaaggttttgagcttagctctgatataccatggaggttaattgatttctttgaacagaaccatggaggagctgatcgagaggtacaagagtgctagtggcgaacaggccaacgcctgcggcgaccagagaatggttagtgattataactctttccttttgtttcagttcTttttctgTttctgtttcagttgttatcctttactgtttccatttcagttgttagctagcccccactccaatttctaatcagtgcctcgtttcatatgtaaattaagcatagggagttgctagtgatgaaaaaaaaggtctggaaatagagctagttgtatccgaaaaatctgagctgctattatgttacagatgattaaacctggaactgaaaactctaggctctagcccaaaactagttggaatacatcaaatagacaatagtataaagtataaacacctgatctacacatcttaggtggcaagtagttgcaacttcgtaatatttcctccatttaaaacctcatgctctcctatcacttaaaactggtgcatgtatgtcatcaggacccaaaacaggaggcaatggtgctcaaacaagaaatcaatctactgcagaagggcctgaggtaaaaactattcacagattgcattacagattggtataattcctttctagaagaaaaaatagataaaatcatacaatcttccagcaaaaatatccaagtttgatttcataaacaaacatagctttctatgtccaattagtaagttcacatcgcaacaagtatgcaatgctatccagacttggtccacactcagtatcattcactagatcactgcaagtaacataaccatacatggaagtgttacaaaaaaattgttgaactcacactaagtaaaagagcttcattcaccaaaccgaactgtttactcgagaaattgatgtaataagaatacatcatatattatttacattacaatgagttcagacacttaactcttgacaaaattaaaacccatggcaggtacatctatgggaacagggcaaatgaacacatgactgttgaagagctgaatgccctagagaggtacttagagatatggatgtacaacattcgctccgcaaaggtaactcattgaaagtcttcagatttcataaagaacaaattgttcaagagatctaaaatctttaatctaacagatgcagataatgatccaagagatccaagcactaaagagcaaggcaagccaaactatcttgtctaactctataaatatccaataaaatgattaataactaactaaaagcatagtttatctctaatcgtgcaggaaggcatgttgaaagctgctaacgaaattctccaagaaaaggtactggcagtccattgacatagaactgtgcacttgccagttttaaaaatgaagataaaatgttgcagcgtgccgtaaactgatgtcagatatgtgcttttgcttgcagatagtagaacagaatggtctgatcgacgtaggcatgatggtagcagatcaacagaatgggcattttagtacaatcccactgttagaagagatcactaacccactgactatactgagtggctattctacttgtaggggctcggagatgggctattccttctaacactaataatggcctgggggatacttgtgttcattactagtgtgtaatatggttaataatgcttttgttgctgtttgctttgctattctgatgtaccttatttagacaagttcccgcaggaagtgtcttttagtattgtatttgtcttgggctgtggtgctttgTttttccctaaagaactcttgaggagctctgttgttgaaccatttcaagtaattgagactattgtttcctggaacgtttatcacatttgtagaattaagcatttttttt
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| CDS seq | atggcgcgaggcaaggtgcagctccgtcgcatcgagaacccggttcaccgtcaggtcaccttctgcaagcgccgtgccggcctgctgaagaaggccagggagctctccatcctctgcgaggccgacatcggcatcatcatcttctccgcccacggcaagctctacgacctcgccaccaccggaaccatggaggagctgatcgagaggtacaagagtgctagtggcgaacaggccaacgcctgcggcgaccagagaatggacccaaaacaggaggcaatggtgctcaaacaagaaatcaatctactgcagaagggcctgaggtacatctatgggaacagggcaaatgaacacatgactgttgaagagctgaatgccctagagaggtacttagagatatggatgtacaacattcgctccgcaaagatgcagataatgatccaagagatccaagcactaaagagcaaggaaggcatgttgaaagctgctaacgaaattctccaagaaaagatagtagaacagaatggtctgatcgacgtaggcatgatggtagcagatcaacagaatgggcattttagtacaatcccactgttagaagagatcactaacccactgactatactgagtggctattctacttgtaggggctcggagatgggctattccttctaa
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| Protein seq | MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGLIDVGMMVADQQNGHFSTIPLLEEITNPLTILSGYSTCRGSEMGYSF |
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| Function | MADS-box transcription factor 26 [UniProtKB/Swiss-Prot:Q0J8G8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0000960 | OsLima_08g0000960.01 | Chr08 | 804935 | 807314 | + | NAM | ||
| CDS seq | atggcgcgaggcaaggtgcagctccgtcgcatcgagaacccggttcaccgtcaggtcaccttctgcaagcgccgtgccggcctgctgaagaaggccagggagctctccatcctctgcgaggccgacatcggcatcatcatcttctccgcccacggcaagctctacgacctcgccaccaccggaaccatggaggagctgatcgagaggtacaagagtgctagtggcgaacaggccaacgcctgcggcgaccagagaatggacccaaaacaggaggcaatggtgctcaaacaagaaatcaatctactgcagaagggcctgaggtacatctatgggaacagggcaaatgaacacatgactgttgaagagctgaatgccctagagaggtacttagagatatggatgtacaacattcgctccgcaaagatgcagataatgatccaagagatccaagcactaaagagcaaggaaggcatgttgaaagctgctaacgaaattctccaagaaaagatagtagaacagaatggtctgatcgacgtaggcatgatggtagcagatcaacagaatgggcattttagtacaatcccactgttagaagagatcactaacccactgactatactgagtggctattctacttgtaggggctcggagatgggctattccttctaa
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| Protein seq | MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGLIDVGMMVADQQNGHFSTIPLLEEITNPLTILSGYSTCRGSEMGYSF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.538621 | 0.578585 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0112700 | RBH | 2.028991 | 1.970449 | 2.303667 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g02070 | RBH | 1.342330 | 1.278041 | 0.580060 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0112700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000910 | RBH | 2.164131 | 20.939434 | 3.347139 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000910 | RBH | 1.848343 | 11.195133 | 4.208587 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000920 | RBH | 0.000000 | 11.346786 | 6.972692 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000920 | RBH | 0.060848 | 0.249316 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000890 | RBH | 6.898849 | 47.493999 | 6.291058 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0010700 | RBH | 0.996327 | 7.6988275 | 2.6040675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000840 | RBH | 0.375819 | 1.871708 | 0.870516 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0011400 | RBH | 2.015503 | 5.9315305 | 3.532172 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000870 | RBH | 0.681845 | 22.571938 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000910 | RBH | 4.023666 | 41.065018 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000890 | RBH | 0.584243 | 2.269355 | 0.295393 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000910 | RBH | 1.230081 | 6.551764 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000940 | RBH | 0.281701 | 2.639073 | 1.905004 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000900 | RBH | 0.000000 | 16.784653 | 3.955206 |
