Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0028470 | OGI:07080430 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:30613362-30614639 | ||||||||
| Gene Symbol | prx116 | ||||||||||
| DNA seq | gtaacgatggaacgccacgcatacaatatatattatgttactccataataattgagtccagttacggtcacggacacacacgactcgacggaaccccacatacatacgtacgtacatacaagttgagaaaaatacaaagatccaatggaggagtcgatgccaacagatagaggccgccgatcgattagtttacagaccgatcgatctcatagaacgtacctcaattatttttacatcgatcatatatgtatgtatatgtgtactactagctagtcgagcttagctagagttgacgaacctgcagtcttttctgacctccccctgtgcgccggtgagcggcgcgttctcggacatggtgagaagcgctgcggcgaagcgctggtggaagtagtcgttgtcggcggccatccggcggacgtagggcgccgtgcgggcgtcggaggccagctgctggtccaccaggaggagcccccgcccggcgagcaggttgcggtagtacatgttgtcgatgagcatgggcgtgacgcggtcgttgcgcgcgtacaccacctctctcgtgtcctccgtcgccgcagccgtcgggcacctcccccgcaggtactccccgtacgccgcctccatgctgccgtccacctgcgggtacagcctccccaccaggttgaagcagtggacgcgccccaccgagtgcgcgcccagcagcgccaccgctccctccgtgtccaccccgatggccgcgaacctcgacagcacggtggacacgctgtcgttgtggttggggatgtactgctccaccacgccgtagtagctctccctgctgtcgcgccgccccgtccgcatggccaccgagggcccacccagcatggccacgccgtcgcgggcggccagggcgaggatgtcggcgcaggagacggtggcagggcactcacgctcgacggcggccttgatggcggcgatgtacttgaagttgcgcatgccgaagctgcggtgggaggactgctcggagacgcctgtggtggtggtggtgtggagcagcagggaggcgtcgcaggagtagaccatgcagtcgtggaagagtgccctcaaccacgacaccgccgtgttgccgtgctcctcgtacagcctccgcacctcctccctcaccacctcctccgccctcgggcacctctccgactccgagtagaagttgagcttcagacctcctcctcctcctcctcctcctctggctatggctgtggcgcagctgcaggccaccatcacaatcaccaagctgcgcctcat
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| CDS seq | atgaggcgcagcttggtgattgtgatggtggcctgcagctgcgccacagccatagccagaggaggaggaggaggaggaggaggtctgaagctcaacttctactcggagtcggagaggtgcccgagggcggaggaggtggtgagggaggaggtgcggaggctgtacgaggagcacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatgtacctgcgggggaggtgcccgacggctgcggcgacggaggacacgagagaggtggtgtacgcgcgcaacgaccgcgtcacgcccatgctcatcgacaacatgtactaccgcaacctgctcgccgggcgggggctcctcctggtggaccagcagctggcctccgacgcccgcacggcgccctacgtccgccggatggccgccgacaacgactacttccaccagcgcttcgccgcagcgcttctcaccatgtccgagaacgcgccgctcaccggcgcacagggggaggtcagaaaagactgcaggttcgtcaactctagctaa
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| Protein seq | MRRSLVIVMVACSCATAIARGGGGGGGGLKLNFYSESERCPRAEEVVREEVRRLYEEHGNTAVSWLRALFHDCMYLRGRCPTAAATEDTREVVYARNDRVTPMLIDNMYYRNLLAGRGLLLVDQQLASDARTAPYVRRMAADNDYFHQRFAAALLTMSENAPLTGAQGEVRKDCRFVNSS |
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| Function | Peroxidase 21 [UniProtKB/Swiss-Prot:Q42580] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0028470 | OsLima_07g0028470.01 | Chr07 | 30613641 | 30614639 | - | NAM | ||
| CDS seq | atgaggcgcagcttggtgattgtgatggtggcctgcagctgcgccacagccatagccagaggaggaggaggaggaggaggaggtctgaagctcaacttctactcggagtcggagaggtgcccgagggcggaggaggtggtgagggaggaggtgcggaggctgtacgaggagcacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatgtacctgcgggggaggtgcccgacggctgcggcgacggaggacacgagagaggtggtgtacgcgcgcaacgaccgcgtcacgcccatgctcatcgacaacatgtactaccgcaacctgctcgccgggcgggggctcctcctggtggaccagcagctggcctccgacgcccgcacggcgccctacgtccgccggatggccgccgacaacgactacttccaccagcgcttcgccgcagcgcttctcaccatgtccgagaacgcgccgctcaccggcgcacagggggaggtcagaaaagactgcaggttcgtcaactctagctaa
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| Protein seq | MRRSLVIVMVACSCATAIARGGGGGGGGLKLNFYSESERCPRAEEVVREEVRRLYEEHGNTAVSWLRALFHDCMYLRGRCPTAAATEDTREVVYARNDRVTPMLIDNMYYRNLLAGRGLLLVDQQLASDARTAPYVRRMAADNDYFHQRFAAALLTMSENAPLTGAQGEVRKDCRFVNSS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0028470 | OsLima_07g0028470.02 | Chr07 | 30613362 | 30614471 | - | IsoSeq | ||
| CDS seq | gcacggcaacacggcggtgtcgtggttgagggcactcttccacgactgcatggtctactcctgcgacgcctccctgctgctccacaccaccaccaccacaggcgtctccgagcagtcctcccaccgcagcttcggcatgcgcaacttcaagtacatcgccgccatcaaggccgccgtcga |
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| Protein seq | ARQHGGVVVEGTLPRLHGLLLRRLPAAPHHHHHRRLRAVLPPQLRHAQLQVHRRHQGRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.111952 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0694300 | RBH | 0.225225 | 1.374172 | 1.553001 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g49360 | RBH | 0.121757 | 0.620938 | 0.319582 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0694300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028810 | RBH | 0.811776 | 31.592468 | 12.421101 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028900 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0028690 | RBH | 0.321977 | 1.704483 | 5.608327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0028470 | RBH | 0.105543 | 0.265864 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0028760 | RBH | 0.0 | 3.932916 | 7.292290 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0467000 | SBH | 7.3930235 | 1.8622475 | 0.0355715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0029230 | RBH | 0.070339 | 0.328898 | 0.396487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0495400 | RBH | 6.2742475 | 8.4747915 | 2.453965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028960 | RBH | 0.274493 | 6.729172 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0028650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028990 | RBH | 0.416251 | 0.707686 | 0.494019 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0028560 | RBH | 0.171608 | 2.295808 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G028620 | RBH | 0.0 | 0.0 | 7.799354 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0028360 | RBH | 1.211617 | 22.253269 | 3.546320 |
