Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0027990 | OGI:07079640 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:30246221-30248218 | ||||||||
| Gene Symbol | FLO18, OsFLO18 | ||||||||||
| DNA seq | ttagttgttcttcaacttaagcacacttatcagcctttcagaaacatctctgtcgagaatgataccattctccatcatatactcccatatctcataagccaacgtagctttcccttcatccagaagaccactgattatatacctaaatgtcaagttatctggttctaccccttttgtcctcatttccttaaaaaggtcaagggcctcaacggctcttgagctttttccaagccagtatattagtgtgttaaaagtaactgtatctggtgatacttctttctgagtcatctgccaaaatattttctgtgcatgtttgaaatgaccaaccttacataaattatgcagcataatattgtacacatttacattaggaacaattttggtgtttagcatctggtcaaaaagctcttcggctagatttgagtatcctatgccaaaaagaccattaatcagaatcccataagtcacagcatcagcttgaattcccttgtaacccatttccttgaataggttcagtgcagaatttaccttttttgccctgcaaaatgcatcgatgagtatgttgcaggatacaatatcgcagaacccaccaacttccatatgatcagaaacgaaagcaaatgctttgtccagttgatgagctttgcatagcccttttaacagtatattatagctgtacctgtcaggattcaccccactcatttccatctttctgatcaaattttcagctttatctgtcatacctatactacagtaatggtttagaaggatattgtacgtcacaacatctggttcacaaccatttctctgcatgaaggacacagttttgtaggctttctctatgctgccagctctccagaaaccacttattagggcattataaatcgaaacattaagttggatatccagagttagcatccttgatgctaattcaaaagcctcatcaaccttttgattcttgcacaaaccaaatatcaatgcaccacaagctacaacatcaggtttaagtcccctcctcaccatttcttcccagagcccaactgcttctgagaacctcctgtgatcgcataaacagctaacaactgttgtgtaggtgacgacatctgggccggttcctttcatggtcatcttctctaccatttgcaaagcatcatataacctattgtgaccacacaaatagtgaacgtatatgttacatgcccaaaaatctgggaagcacccaaatttatccatgtcagtcagaagctcctctacaagctcaatcctgtttgattgacacaatgcagtaatccaccttgagtaagtgaatggagttaaacaaaatccttttgcaagtgccatgttgtaatacttctcgaccaaatcaaagcaacagttcttaatcataacacctatgaacctgttgtaatcgacaccgaactcacgacaacctgatgtgaccatctcatcaaatgtttctatgacggaatcaaacttgccagctcgggcatagccagccaaaagtacccgatagagagagcgatgaaatgctaccccctggctccttactcttcccaggaactccaaaagcagggcgaaattgtcatctacaaacagcaagcttatgatgtacgctatggcaaaattgttatgataaaatccagggcgtgactctgcccaccagtaaaaccgaactgccatccccgagtccgacaagccacggagcaccttgttgacgacgaaaggatccagctcgacatggaggccctccagctccagctcaaccgactctgaccacctcccacactccagcgctcgcccaataataacgcaactggtctctgtgcgaactggccggaaaagctcagacaaccggcagtgagcccctggattggcattgtcgacgccggtgctgaacctcgctacctgcctcgatgaaacgatccaggaaacggtgtggagcacgcagagcctggtaatgagagacgacgacccagatggtcgtgtggccaagaacat
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| CDS seq | atgttcttggccacacgaccatctgggtcgtcgtctctcattaccaggctctgcgtgctccacaccgtttcctggatcgtttcatcgaggcaggtagcgaggttcagcaccggcgtcgacaatgccaatccaggggctcactgccggttgtctgagcttttccggccagttcgcacagagaccagttgcgttattattgggcgagcgctggagtgtgggaggtggtcagagtcggttgagctggagctggagggcctccatgtcgagctggatcctttcgtcgtcaacaaggtgctccgtggcttgtcggactcggggatggcagttcggttttactggtgggcagagtcacgccctggattttatcataacaattttgccatagcgtacatcataagcttgctgtttgtagatgacaatttcgccctgcttttggagttcctgggaagagtaaggagccagggggtagcatttcatcgctctctctatcgggtacttttggctggctatgcccgagctggcaagtttgattccgtcatagaaacatttgatgagatggtcacatcaggttgtcgtgagttcggtgtcgattacaacaggttcataggtgttatgattaagaactgttgctttgatttggtcgagaagtattacaacatggcacttgcaaaaggattttgtttaactccattcacttactcaaggtggattactgcattgtgtcaatcaaacaggattgagcttgtagaggagcttctgactgacatggataaatttgggtgcttcccagatttttgggcatgtaacatatacgttcactatttgtgtggtcacaataggttatatgatgctttgcaaatggtagagaagatgaccatgaaaggaaccggcccagatgtcgtcacctacacaacagttgttagctgtttatgcgatcacaggaggttctcagaagcagttgggctctgggaagaaatggtgaggaggggacttaaacctgatgttgtagcttgtggtgcattgatatttggtttgtgcaagaatcaaaaggttgatgaggcttttgaattagcatcaaggatgctaactctggatatccaacttaatgtttcgatttataatgccctaataagtggtttctggagagctggcagcatagagaaagcctacaaaactgtgtccttcatgcagagaaatggttgtgaaccagatgttgtgacgtacaatatccttctaaaccattactgtagtataggtatgacagataaagctgaaaatttgatcagaaagatggaaatgagtggggtgaatcctgacaggtacagctataatatactgttaaaagggctatgcaaagctcatcaactggacaaagcatttgctttcgtttctgatcatatggaagttggtgggttctgcgatattgtatcctgcaacatactcatcgatgcattttgcagggcaaaaaaggtaaattctgcactgaacctattcaaggaaatgggttacaagggaattcaagctgatgctgtgacttatgggattctgattaatggtctttttggcataggatactcaaatctagccgaagagctttttgaccagatgctaaacaccaaaattgttcctaatgtaaatgtgtacaatattatgctgcataatttatgtaaggttggtcatttcaaacatgcacagaaaatattttggcagatgactcagaaagaagtatcaccagatacagttacttttaacacactaatatactggcttggaaaaagctcaagagccgttgaggcccttgacctttttaaggaaatgaggacaaaaggggtagaaccagataacttgacatttaggtatataatcagtggtcttctggatgaagggaaagctacgttggcttatgagatatgggagtatatgatggagaatggtatcattctcgacagagatgtttctgaaaggctgataagtgtgcttaagttgaagaacaactaa
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| Protein seq | MFLATRPSGSSSLITRLCVLHTVSWIVSSRQVARFSTGVDNANPGAHCRLSELFRPVRTETSCVIIGRALECGRWSESVELELEGLHVELDPFVVNKVLRGLSDSGMAVRFYWWAESRPGFYHNNFAIAYIISLLFVDDNFALLLEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLISVLKLKNN |
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| Function | Pentatricopeptide repeat-containing protein At1g13040, mitochondrial [UniProtKB/Swiss-Prot:Q9SAD9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027990 | OsLima_07g0027990.01 | Chr07 | 30246221 | 30248218 | - | NAM | ||
| CDS seq | atgttcttggccacacgaccatctgggtcgtcgtctctcattaccaggctctgcgtgctccacaccgtttcctggatcgtttcatcgaggcaggtagcgaggttcagcaccggcgtcgacaatgccaatccaggggctcactgccggttgtctgagcttttccggccagttcgcacagagaccagttgcgttattattgggcgagcgctggagtgtgggaggtggtcagagtcggttgagctggagctggagggcctccatgtcgagctggatcctttcgtcgtcaacaaggtgctccgtggcttgtcggactcggggatggcagttcggttttactggtgggcagagtcacgccctggattttatcataacaattttgccatagcgtacatcataagcttgctgtttgtagatgacaatttcgccctgcttttggagttcctgggaagagtaaggagccagggggtagcatttcatcgctctctctatcgggtacttttggctggctatgcccgagctggcaagtttgattccgtcatagaaacatttgatgagatggtcacatcaggttgtcgtgagttcggtgtcgattacaacaggttcataggtgttatgattaagaactgttgctttgatttggtcgagaagtattacaacatggcacttgcaaaaggattttgtttaactccattcacttactcaaggtggattactgcattgtgtcaatcaaacaggattgagcttgtagaggagcttctgactgacatggataaatttgggtgcttcccagatttttgggcatgtaacatatacgttcactatttgtgtggtcacaataggttatatgatgctttgcaaatggtagagaagatgaccatgaaaggaaccggcccagatgtcgtcacctacacaacagttgttagctgtttatgcgatcacaggaggttctcagaagcagttgggctctgggaagaaatggtgaggaggggacttaaacctgatgttgtagcttgtggtgcattgatatttggtttgtgcaagaatcaaaaggttgatgaggcttttgaattagcatcaaggatgctaactctggatatccaacttaatgtttcgatttataatgccctaataagtggtttctggagagctggcagcatagagaaagcctacaaaactgtgtccttcatgcagagaaatggttgtgaaccagatgttgtgacgtacaatatccttctaaaccattactgtagtataggtatgacagataaagctgaaaatttgatcagaaagatggaaatgagtggggtgaatcctgacaggtacagctataatatactgttaaaagggctatgcaaagctcatcaactggacaaagcatttgctttcgtttctgatcatatggaagttggtgggttctgcgatattgtatcctgcaacatactcatcgatgcattttgcagggcaaaaaaggtaaattctgcactgaacctattcaaggaaatgggttacaagggaattcaagctgatgctgtgacttatgggattctgattaatggtctttttggcataggatactcaaatctagccgaagagctttttgaccagatgctaaacaccaaaattgttcctaatgtaaatgtgtacaatattatgctgcataatttatgtaaggttggtcatttcaaacatgcacagaaaatattttggcagatgactcagaaagaagtatcaccagatacagttacttttaacacactaatatactggcttggaaaaagctcaagagccgttgaggcccttgacctttttaaggaaatgaggacaaaaggggtagaaccagataacttgacatttaggtatataatcagtggtcttctggatgaagggaaagctacgttggcttatgagatatgggagtatatgatggagaatggtatcattctcgacagagatgtttctgaaaggctgataagtgtgcttaagttgaagaacaactaa
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| Protein seq | MFLATRPSGSSSLITRLCVLHTVSWIVSSRQVARFSTGVDNANPGAHCRLSELFRPVRTETSCVIIGRALECGRWSESVELELEGLHVELDPFVVNKVLRGLSDSGMAVRFYWWAESRPGFYHNNFAIAYIISLLFVDDNFALLLEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILDRDVSERLISVLKLKNN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.082927 | 0.181439 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0688100 | RBH | 0.527081 | 0.509662 | 0.714118 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48850 | RBH | 0.318338 | 0.314626 | 0.214924 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0688100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028350 | RBH | 0.142624 | 5.244827 | 1.587106 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028390 | RBH | 0.065733 | 0.740638 | 0.268904 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0028190 | RBH | 0.0 | 0.0 | 2.319662 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0028010 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0028280 | RBH | 0.193928 | 5.169353 | 5.908951 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0475700 | RBH | 1.314784 | 3.381512 | 2.548493 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028730 | RBH | 0.048426 | 0.0 | 0.138279 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0489700 | RBH | 1.2687295 | 1.9455255 | 6.935736 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0015310 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028470 | RBH | 0.177093 | 5.481263 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0028170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028500 | RBH | 0.129829 | 0.119483 | 0.230440 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0028080 | RBH | 0.059092 | 1.388055 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G028130 | RBH | 0.000000 | 0.000000 | 1.388216 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027890 | RBH | 0.0 | 10.704887 | 0.910579 |
