Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0027640 | OGI:07079050 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:29988058-29990289 | ||||||||
| Gene Symbol | NAC103, ONAC103, OsNAC18, NAC18 | ||||||||||
| DNA seq | ggatcgatcgatcgatgagcactcgctttgattcgatcaatcgattgatcgagctataggtagccaattacaagctaattaaagcagtaaccgtattagatcgtcgatggagatgacgatgtcgtcggcggcgacgtcgctgccgccggggttccggttccacccgacggacgaggagctgatcctgcactacctccgcagccgcgccaccgccgggcagtgccccgtccccatcatcgccgacgtcgacatctacaagttcgatccatgggacctgccatgtaagccttcttcctcgatcatatcgatggatcgattgagttggtcgttcggtcaattgctactggttaattaattgcagcgaaggcggtgtacggggagagcgagtggtatttcttcagcccgcgagaccgcaagtaccccaacggaatccggccgaaccgcgccgccgggtcggggtactggaaggcgacgggaaccgacaagcccatccacgacagcgccaccggcgagagcgtcggcgtcaagaaggccctcgtcttctaccgcggccgccctcccaagggcaccaagaccagctggatcatgcacgagtaccgcctcgccgccgaccctctcgccgccgccgcaaacacctacaagccctcctcctcctcccgattccgcaacgtctccatgagggtatgtacctactcatacgccatcgccaattcgccatgaccaccatctctgagcttaactactaactgcatatccatccatctcctcatgccacttgcgtgctctcatcctgttgcaccactactaattgaactactgtactcttcttctaggatattgtaatttaatcagatgattggactgacgtacgcttattaactttttttaatgaactactagcatcactcaatcattaattcactcgctactgttagtaccacatcatgaaaccgtggatggtacgtaacaagagagatactcctttctcttttcacttgctgttaatttaatttaatttcagagtataataattataccgagagaagaatagagatatccattagccttgtcctggcgccatgcatgcatgtgtggttattatcgatttaaagtatgtagcttttgacaatgataggcatgacatttttgtgctcatcgatccatctgcttaattacgtgcagctggacgactgggtgctctgccggatctacaagaagtccggccaggcgtcgccgatgatgccgccgctcgccgccgactacgaccacgacgagccgtccggagtccttgacgacgcctacagcttctacgcgccgccgatgatcagcaccacgctcatccccaagctccccaagatcccctccatctccgagctcttcgacgagcacgcgctcgcccagatcttcgacgccgccgccgacccgccggccgaccaccatcagcatgccctcgccgtccacccctccctgaaccagctcctcggcgtcggcgacaacttcctcgcggagtgctacccgtcgacggcgtccacggccaccgttgccggcggcaagcgcaaggcgagcccggccggagactacgccggcggcggccacacgccggcgaagaggctcaacggctcatgcttcgacgtggcgccgcagtccgtggtgggcggcttgcaagcgacgccgtcgtcagtcctcgccggactcaaccaccagatgcttcctcctcagctattctgaatatattcttaactagcttaattaatggccatggaaatcgatcaaacgcagtcgatcgaatttacggatgctacgtactggcatgaacaatcttgccgacgatattaagatcggatggaagcatggacgacgatgatgattggggtacggtatagaattattgtagtattgaacaattaggcatttgtatgcgattttttctcctacgtattcatttcaggcacagtgcaaaagcaagctggagccttgatagtactttacaccgtagagagggaatgttgtacaattaaagattactagatatacagaacaataatactttactgtagccaattgatatactactagtatacaggattgtagaagatatcaaatgcaatagattctggctctgatctgggaaatggaaattgcatggatgtgttacttcttggctgaagtaggtgtaatatcaatggagcatgcatgcagtctaacggcaaactttcatcttctgttcttaaa
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| CDS seq | atggagatgacgatgtcgtcggcggcgacgtcgctgccgccggggttccggttccacccgacggacgaggagctgatcctgcactacctccgcagccgcgccaccgccgggcagtgccccgtccccatcatcgccgacgtcgacatctacaagttcgatccatgggacctgccatcgaaggcggtgtacggggagagcgagtggtatttcttcagcccgcgagaccgcaagtaccccaacggaatccggccgaaccgcgccgccgggtcggggtactggaaggcgacgggaaccgacaagcccatccacgacagcgccaccggcgagagcgtcggcgtcaagaaggccctcgtcttctaccgcggccgccctcccaagggcaccaagaccagctggatcatgcacgagtaccgcctcgccgccgaccctctcgccgccgccgcaaacacctacaagccctcctcctcctcccgattccgcaacgtctccatgaggctggacgactgggtgctctgccggatctacaagaagtccggccaggcgtcgccgatgatgccgccgctcgccgccgactacgaccacgacgagccgtccggagtccttgacgacgcctacagcttctacgcgccgccgatgatcagcaccacgctcatccccaagctccccaagatcccctccatctccgagctcttcgacgagcacgcgctcgcccagatcttcgacgccgccgccgacccgccggccgaccaccatcagcatgccctcgccgtccacccctccctgaaccagctcctcggcgtcggcgacaacttcctcgcggagtgctacccgtcgacggcgtccacggccaccgttgccggcggcaagcgcaaggcgagcccggccggagactacgccggcggcggccacacgccggcgaagaggctcaacggctcatgcttcgacgtggcgccgcagtccgtggtgggcggcttgcaagcgacgccgtcgtcagtcctcgccggactcaaccaccagatgcttcctcctcagctattctga
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| Protein seq | MEMTMSSAATSLPPGFRFHPTDEELILHYLRSRATAGQCPVPIIADVDIYKFDPWDLPSKAVYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHDSATGESVGVKKALVFYRGRPPKGTKTSWIMHEYRLAADPLAAAANTYKPSSSSRFRNVSMRLDDWVLCRIYKKSGQASPMMPPLAADYDHDEPSGVLDDAYSFYAPPMISTTLIPKLPKIPSISELFDEHALAQIFDAAADPPADHHQHALAVHPSLNQLLGVGDNFLAECYPSTASTATVAGGKRKASPAGDYAGGGHTPAKRLNGSCFDVAPQSVVGGLQATPSSVLAGLNHQMLPPQLF |
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| Function | NAC domain-containing protein 10 [UniProtKB/Swiss-Prot:Q8H4S4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027640 | OsLima_07g0027640.01 | Chr07 | 29988058 | 29990289 | + | NAM | ||
| CDS seq | atggagatgacgatgtcgtcggcggcgacgtcgctgccgccggggttccggttccacccgacggacgaggagctgatcctgcactacctccgcagccgcgccaccgccgggcagtgccccgtccccatcatcgccgacgtcgacatctacaagttcgatccatgggacctgccatcgaaggcggtgtacggggagagcgagtggtatttcttcagcccgcgagaccgcaagtaccccaacggaatccggccgaaccgcgccgccgggtcggggtactggaaggcgacgggaaccgacaagcccatccacgacagcgccaccggcgagagcgtcggcgtcaagaaggccctcgtcttctaccgcggccgccctcccaagggcaccaagaccagctggatcatgcacgagtaccgcctcgccgccgaccctctcgccgccgccgcaaacacctacaagccctcctcctcctcccgattccgcaacgtctccatgaggctggacgactgggtgctctgccggatctacaagaagtccggccaggcgtcgccgatgatgccgccgctcgccgccgactacgaccacgacgagccgtccggagtccttgacgacgcctacagcttctacgcgccgccgatgatcagcaccacgctcatccccaagctccccaagatcccctccatctccgagctcttcgacgagcacgcgctcgcccagatcttcgacgccgccgccgacccgccggccgaccaccatcagcatgccctcgccgtccacccctccctgaaccagctcctcggcgtcggcgacaacttcctcgcggagtgctacccgtcgacggcgtccacggccaccgttgccggcggcaagcgcaaggcgagcccggccggagactacgccggcggcggccacacgccggcgaagaggctcaacggctcatgcttcgacgtggcgccgcagtccgtggtgggcggcttgcaagcgacgccgtcgtcagtcctcgccggactcaaccaccagatgcttcctcctcagctattctga
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| Protein seq | MEMTMSSAATSLPPGFRFHPTDEELILHYLRSRATAGQCPVPIIADVDIYKFDPWDLPSKAVYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHDSATGESVGVKKALVFYRGRPPKGTKTSWIMHEYRLAADPLAAAANTYKPSSSSRFRNVSMRLDDWVLCRIYKKSGQASPMMPPLAADYDHDEPSGVLDDAYSFYAPPMISTTLIPKLPKIPSISELFDEHALAQIFDAAADPPADHHQHALAVHPSLNQLLGVGDNFLAECYPSTASTATVAGGKRKASPAGDYAGGGHTPAKRLNGSCFDVAPQSVVGGLQATPSSVLAGLNHQMLPPQLF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.147194 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0683200 | RBH | 0.517881 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48450 | RBH | 0.306313 | 0.156731 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0683200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027990 | RBH | 0.343403 | 8.641116 | 0.764621 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028030 | RBH | 0.0 | 1.302733 | 1.249670 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027810 | RBH | 0.0 | 2.279374 | 5.629578 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027620 | RBH | 0.0 | 0.153587 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027910 | RBH | 0.0 | 6.149896 | 2.562614 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0471200 | RBH | 1.0296135 | 15.007159 | 3.041718 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028350 | RBH | 0.000000 | 0.485465 | 0.373018 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0485100 | RBH | 4.7071955 | 37.670294 | 0.0137895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016100 | RBH | 0.105455 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028090 | RBH | 0.0 | 17.809978 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027810 | RBH | 0.0 | 15.171358 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028130 | RBH | 0.236289 | 1.074657 | 1.134846 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027700 | RBH | 0.066539 | 4.819668 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027770 | RBH | 0.094963 | 1.141757 | 0.895184 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027520 | RBH | 0.283869 | 16.693130 | 6.051466 |
