Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0027540 | OGI:07078820 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:29879320-29881345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgctctcgccgtgctgctgctggtggttgcggcggtggagggcggcgcggcgtggtcgttctggccgccggcggccggcgacgagccgtactgcctcagctggcgggtgatggtggaggccaacaacgccaagaactggcccaccgtgccgccgccgtgcgtcggctacgtctggagatacatggcgtgggggcagtacgcccgcgacgtggccggcgtcgccgaccagatcgccgcctacgccgcccagctcgccgccggcgacgacggcctcgacgcctgggtgttcgacgtcgacgacacgtgcctgtccaacctcttctactaccaggcaaagcaattcgggtacagagattgtcatcactgatcactgatcagactagctaacatacgtgtaatctattactccatccgtttgaggtcacaggacgttttgactttggttagagttaaactgcttttaactttaatcaaatttgtagagaaaagtagtaacattttcaacctaaaaaattttattatgaaaatatattcaattattgatttgataaaaacgaatttagtattataaatattatatatttgtctgtaaatttaatcaaacttaaaataatttaattttgtataaagtgaaaacgtcttataagctgaaaccgagggagtaactgttaattactccaattgcttgatgatcgatcgatgtggatgcagggcgtatgatccggtggcgttcaagaagtgggcgagcaaggcgatctgcccgggggtacctggcatggcgcagctgttccagacgctcagaggcagaggattcagagtcttcatcctctccggccgagaccagcagactctcgcctccagcaccgccgccaacctcgccgcggccggcttcgccggctacgaccggctcatcatgaggtagacacaataatatactccctccgttttaaaatatttatcaccgttaactttttaactcatatttaatcattcgtcttattaaaaaaaattgtgaaatatgtaaaactatatgtgtacatgaaagtatatttaagaatgaatcaaatgatattaaaagaataaataattacttaaatttttttaataaaacgaatgatcaaacacgtactaaaaaatcaacggtgtcaaacattttgaaacggatgaagtataaaaacatcatcagaaaatataattgggcctaaattaatacatacccatattgggcctaacttagtagtactggatcgaacggcccaaaagaataaaaaaattaaggcccatgttccatatttggcaaacgggggtaagcgtcagtcaccaatcagccagcctaaaaggggacagacatttccatggtgtgtgtacgtcgcactgtacgagatcgatcgtgccagtttctcgtcctcatggccacgacacatttcgtgcaagatcatgataatggaataagaaaacagggagctggataattagcatatattctcaactgcagacaactagtactagaagatatagctgattgctaatttgctttcgacggcacagtgcgtcaaaggatatttttttgtaagtacatcgaatttgtgtggactgcaatctggagtagctcgcagtttcgatgatttgcacgtacgtgtgccaatctcatcagctgtaggtagcctctcaccgtctgcatgcttaataaattttaaagttgattttaagagttaattttgttagtctattttcagtattgacttttaaacaaaatacataattttagtggtttcgtttattttgagcatgataacttgaacaatcaggatattacgttcaaaattaaatctattatatgcagaagcgcggagtaccggggaatgagcgcggtggtgttcaagtcggcgatgagaatgcagctgatggaggaggggtacaggatacgcggcaatgtgggtgaccagtggagcgatctgcagggtgacttcgtcggcgaccgtgtcttcaaagtgcccaacccaatgtactttgttccatga
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| CDS seq | atggccgctctcgccgtgctgctgctggtggttgcggcggtggagggcggcgcggcgtggtcgttctggccgccggcggccggcgacgagccgtactgcctcagctggcgggtgatggtggaggccaacaacgccaagaactggcccaccgtgccgccgccgtgcgtcggctacgtctggagatacatggcgtgggggcagtacgcccgcgacgtggccggcgtcgccgaccagatcgccgcctacgccgcccagctcgccgccggcgacgacggcctcgacgcctgggtgttcgacgtcgacgacacaagcgcggagtaccggggaatgagcgcggtggtgttcaagtcggcgatgagaatgcagctgatggaggaggggtacaggatacgcggcaatgtgggtgaccagtggagcgatctgcagggtgacttcgtcggcgaccgtgtcttcaaagtgcccaacccaatgtactttgttccatga
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| Protein seq | MAALAVLLLVVAAVEGGAAWSFWPPAAGDEPYCLSWRVMVEANNAKNWPTVPPPCVGYVWRYMAWGQYARDVAGVADQIAAYAAQLAAGDDGLDAWVFDVDDTSAEYRGMSAVVFKSAMRMQLMEEGYRIRGNVGDQWSDLQGDFVGDRVFKVPNPMYFVP |
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| Function | Acid phosphatase 1 [UniProtKB/Swiss-Prot:P27061] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027540 | OsLima_07g0027540.01 | Chr07 | 29879320 | 29881345 | + | NAM | ||
| CDS seq | atggccgctctcgccgtgctgctgctggtggttgcggcggtggagggcggcgcggcgtggtcgttctggccgccggcggccggcgacgagccgtactgcctcagctggcgggtgatggtggaggccaacaacgccaagaactggcccaccgtgccgccgccgtgcgtcggctacgtctggagatacatggcgtgggggcagtacgcccgcgacgtggccggcgtcgccgaccagatcgccgcctacgccgcccagctcgccgccggcgacgacggcctcgacgcctgggtgttcgacgtcgacgacacaagcgcggagtaccggggaatgagcgcggtggtgttcaagtcggcgatgagaatgcagctgatggaggaggggtacaggatacgcggcaatgtgggtgaccagtggagcgatctgcagggtgacttcgtcggcgaccgtgtcttcaaagtgcccaacccaatgtactttgttccatga
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| Protein seq | MAALAVLLLVVAAVEGGAAWSFWPPAAGDEPYCLSWRVMVEANNAKNWPTVPPPCVGYVWRYMAWGQYARDVAGVADQIAAYAAQLAAGDDGLDAWVFDVDDTSAEYRGMSAVVFKSAMRMQLMEEGYRIRGNVGDQWSDLQGDFVGDRVFKVPNPMYFVP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0681200 | RBH | 0.0 | 0.0 | 2.101115 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48320 | RBH | 0.0 | 0.0 | 0.462206 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0681200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027890 | RBH | 0.0 | 0.0 | 1.079413 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027930 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027710 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027810 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0469700 | RBH | 0.5517435 | 1.5507895 | 1.2318595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028260 | RBH | 0.0 | 0.0 | 0.177540 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0484000 | RBH | 0.559322 | 2.8748465 | 1.339344 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016360 | RBH | 0.0 | 0.379670 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028040 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027670 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027420 | RBH | 0.0 | 0.000000 | 0.000000 |
