Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0027370 | OGI:07078490 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:29728504-29731320 | ||||||||
| Gene Symbol | CIPK02, OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26 | ||||||||||
| DNA seq | aacaaattttgatcgattttttttttataatatgcatctttttgcgtcatgataaatgaaaaatgtcagtattacagttctccatgagcaaaaacagtaacatccagaaacaaactcaacatttttttcaaataaatcctcatttgaagatagcatcgatattaatattaacaatacatgaggaatgaaaatgaataacaagaggaacaaaagctgcagaaatacataaacgattggaagtcgactcaaattgcaaaaaacttgcccttgtcaaagttttttagcacgttggctgctgctgctgcttcggttgctcaccctgccaagcccagactatgtccttcaaagctggtctcatctcttggttcaagaccttacggtattcaagtgtatcaccatttgtcttctttagctccacaagatgaaagtttggggtaacctcgaatatctctgcatcaatgcccataacacctttccttccaggcttggagccttccatcttcaacagtccaccatctttctttgtgagcttcaaccgcaagcccttggcaatatcctcaatcttagatatgattgttgaagctgtactggtggatgtgaatttggactctttcttatcagactcctcaaacataccagagaggtcaagtccagttgacaaagaaattatatcaaaagcattcaagttggacggcttcttctccaatgttggagcgctattgaaggagtcaaaatctgtgctcatatcaacaggaattgcatcctttggttgtagattatatctgagcagctttgcatcgagacccttcctaaaccaaggattttccatgattttgtccattgagatccttgtacttgggttaggatcaagtatcctgagcaagagccttcgaacatcggtattaaaccaacttggacatttgaattctgctttcccaatcttcttatacatatccatcaagttcttatcatggaaaggtagatagccggccaatagcacaaagagtatcactccacaagaccatatgtcagccttagcaccgtcatagcctcttctgttgatcacttctggagcaacataagcaggtgtgccacaggttgtgtggagcagcccatcctgtcttttgcaatcagcaagagcacttaggccaaaatctgaaaccttcagattgctgttctcatcaagaagaagattttctggcttcaaatcacggtgataaacacccctgctgtggcaaaagtcaacagcgcaaatcagttgttggaagtacttccttgctgcatcttcctttagtcttcctctctgaactttgttgaacaactctccacctttgacgtgctccagcacaaaatatatcttagtcttggtagccatgacctcatataactgcacaatgtttggatgcctcaccaacttcatcacagaaatctcacgtttgatctgatccatgagcccgcctttcaaaaccttctctttatcaatcatcttgatagcaacactctcagaagtctcggtgttacgggcatggtaaaccttggcaaaggttccttgcccgagtaatttccccatctcatactttttcatcaacatatttcctctctgctccgccatcacgccaaagaaagcagtaatcccaaagctcaaagtgtggtaaccaggagcctagaaatgataggtgacttcaaccgtctccaccaagatggtgatctaagaagatggttgagttgccacgtcgaaccccatagtgcgagagcacatggagcaagcgctgtatatactcttgtgttccaatgtcatgaagagttgtggaaggagaaatatggcttgctaccctgccaattccctcacaaggtagctctctagcatgcaagcacatctttctgcattccctaaggtgtttccttcttattggaagtctagtaattctgccaaaagaagaagatgcaataaggtcagtcatggacaactactagttggaatcaactaacataaaactcaattgagaagttctaggtaaaaggattaatctactgcacagcacatatgcatgaaaacaagacatgccagttaagactgtttctacgcttttcaaccagaacttgttttaaaagaaagtaacaggaaacacaatacagttacacagttttctgtactacataaagctaccctgaattaaaaggttggatccgaaagcttcgctcaacaaccaggctagcagataacaagaggctaattataattcccacgctatgcatctccagtagaaaggagattatttttttctttttttacccttccaagtatgtatgacagattaagttttcgcatgaatcgcatcaaccacaacacctcgcgttgcagaacaaatacagatctagaaacgagcactcaaccagtgtactggagactcgacctgagaatctgaaacccacccctcgcaaacccaagatgatgtttttcacatacagacgaatcaacaaaccatagatccatatagattatcaacaaccagagataaggagaaccgtaccagatcccgacgtctgacgacgcgaagaacacccaacgccgccgccgccgccggtagaccgaaattctcacgacaggagactcaccctcgccgcagtcgcgagaaggagtgagaagaaggaagagcggtggtagtggaattggcttcgccttggtgcgtgcggagatcgagatcgagatcgagatctgttcgagcacggcgcagcaattcgttcaggcgtcaaagacggctcctttttatagcgaagcccaagtgccgtaggatattcgcttccgtttcttctttt
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| CDS seq | atggcggagcagagaggaaatatgttgatgaaaaagtatgagatggggaaattactcgggcaaggaacctttgccaaggtttaccatgcccgtaacaccgagacttctgagagtgttgctatcaagatgattgataaagagaaggttttgaaaggcgggctcatggatcagatcaaacgtgagatttctgtgatgaagttggtgaggcatccaaacattgtgcagttatatgaggtcatggctaccaagactaagatatattttgtgctggagcacgtcaaaggtggagagttgttcaacaaagttcagagaggaagactaaaggaagatgcagcaaggaagtacttccaacaactgatttgcgctgttgacttttgccacagcaggggtgtttatcaccgtgatttgaagccagaaaatcttcttcttgatgagaacagcaatctgaaggtttcagattttggcctaagtgctcttgctgattgcaaaagacaggatgggctgctccacacaacctgtggcacacctgcttatgttgctccagaagtgatcaacagaagaggctatgacggtgctaaggctgacatatggtcttgtggagtgatactctttgtgctattggccggctatctacctttccatgataagaacttgatggatatgtataagaagattgggaaagcagaattcaaatgtccaagttggtttaataccgatgttcgaaggctcttgctcaggatacttgatcctaacccaagtacaaggatctcaatggacaaaatcatggaaaatccttggtttaggaagggtctcgatgcaaagctgctcagatataatctacaaccaaaggatgcaattcctgttgatatgagcacagattttgactccttcaatagcgctccaacattggagaagaagccgtccaacttgaatgcttttgatataatttctttgtcaactggacttgacctctctggtatgtttgaggagtctgataagaaagagtccaaattcacatccaccagtacagcttcaacaatcatatctaagattgaggatattgccaagggcttgcggttgaagctcacaaagaaagatggtggactgttgaagatggaaggctccaagcctggaaggaaaggtgttatgggcattgatgcagagatattcgaggttaccccaaactttcatcttgtggagctaaagaagacaaatggtgatacacttgaataccgtaaggtcttgaaccaagagatgagaccagctttgaaggacatagtctgggcttggcagggtgagcaaccgaagcagcagcagcagccaacgtgctaa
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| Protein seq | MAEQRGNMLMKKYEMGKLLGQGTFAKVYHARNTETSESVAIKMIDKEKVLKGGLMDQIKREISVMKLVRHPNIVQLYEVMATKTKIYFVLEHVKGGELFNKVQRGRLKEDAARKYFQQLICAVDFCHSRGVYHRDLKPENLLLDENSNLKVSDFGLSALADCKRQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILFVLLAGYLPFHDKNLMDMYKKIGKAEFKCPSWFNTDVRRLLLRILDPNPSTRISMDKIMENPWFRKGLDAKLLRYNLQPKDAIPVDMSTDFDSFNSAPTLEKKPSNLNAFDIISLSTGLDLSGMFEESDKKESKFTSTSTASTIISKIEDIAKGLRLKLTKKDGGLLKMEGSKPGRKGVMGIDAEIFEVTPNFHLVELKKTNGDTLEYRKVLNQEMRPALKDIVWAWQGEQPKQQQQPTC |
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| Function | CBL-interacting protein kinase 2 [UniProtKB/Swiss-Prot:Q7X996] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027370 | OsLima_07g0027370.01 | Chr07 | 29728504 | 29731320 | - | NAM | ||
| CDS seq | atggcggagcagagaggaaatatgttgatgaaaaagtatgagatggggaaattactcgggcaaggaacctttgccaaggtttaccatgcccgtaacaccgagacttctgagagtgttgctatcaagatgattgataaagagaaggttttgaaaggcgggctcatggatcagatcaaacgtgagatttctgtgatgaagttggtgaggcatccaaacattgtgcagttatatgaggtcatggctaccaagactaagatatattttgtgctggagcacgtcaaaggtggagagttgttcaacaaagttcagagaggaagactaaaggaagatgcagcaaggaagtacttccaacaactgatttgcgctgttgacttttgccacagcaggggtgtttatcaccgtgatttgaagccagaaaatcttcttcttgatgagaacagcaatctgaaggtttcagattttggcctaagtgctcttgctgattgcaaaagacaggatgggctgctccacacaacctgtggcacacctgcttatgttgctccagaagtgatcaacagaagaggctatgacggtgctaaggctgacatatggtcttgtggagtgatactctttgtgctattggccggctatctacctttccatgataagaacttgatggatatgtataagaagattgggaaagcagaattcaaatgtccaagttggtttaataccgatgttcgaaggctcttgctcaggatacttgatcctaacccaagtacaaggatctcaatggacaaaatcatggaaaatccttggtttaggaagggtctcgatgcaaagctgctcagatataatctacaaccaaaggatgcaattcctgttgatatgagcacagattttgactccttcaatagcgctccaacattggagaagaagccgtccaacttgaatgcttttgatataatttctttgtcaactggacttgacctctctggtatgtttgaggagtctgataagaaagagtccaaattcacatccaccagtacagcttcaacaatcatatctaagattgaggatattgccaagggcttgcggttgaagctcacaaagaaagatggtggactgttgaagatggaaggctccaagcctggaaggaaaggtgttatgggcattgatgcagagatattcgaggttaccccaaactttcatcttgtggagctaaagaagacaaatggtgatacacttgaataccgtaaggtcttgaaccaagagatgagaccagctttgaaggacatagtctgggcttggcagggtgagcaaccgaagcagcagcagcagccaacgtgctaa
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| Protein seq | MAEQRGNMLMKKYEMGKLLGQGTFAKVYHARNTETSESVAIKMIDKEKVLKGGLMDQIKREISVMKLVRHPNIVQLYEVMATKTKIYFVLEHVKGGELFNKVQRGRLKEDAARKYFQQLICAVDFCHSRGVYHRDLKPENLLLDENSNLKVSDFGLSALADCKRQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILFVLLAGYLPFHDKNLMDMYKKIGKAEFKCPSWFNTDVRRLLLRILDPNPSTRISMDKIMENPWFRKGLDAKLLRYNLQPKDAIPVDMSTDFDSFNSAPTLEKKPSNLNAFDIISLSTGLDLSGMFEESDKKESKFTSTSTASTIISKIEDIAKGLRLKLTKKDGGLLKMEGSKPGRKGVMGIDAEIFEVTPNFHLVELKKTNGDTLEYRKVLNQEMRPALKDIVWAWQGEQPKQQQQPTC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.254773 | 2.172895 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0678600 | RBH | 8.066572 | 7.517815 | 53.602169 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48100 | RBH | 5.188936 | 4.809706 | 13.150428 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0678600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027720 | RBH | 2.190891 | 135.907593 | 64.193779 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027750 | RBH | 1.630355 | 46.009930 | 30.749588 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027550 | RBH | 2.092100 | 90.062347 | 67.320717 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027330 | RBH | 0.281698 | 4.973274 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027640 | RBH | 36.063305 | 97.163612 | 111.519394 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0468100 | RBH | 16.1225435 | 105.509895 | 63.127096 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028090 | RBH | 0.534236 | 9.390650 | 15.456699 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0482200 | RBH | 33.592236 | 76.9963265 | 32.9677495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016860 | RBH | 4.395079 | 1.401193 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027820 | RBH | 5.494400 | 136.385086 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027540 | RBH | 23.957783 | 163.959976 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027870 | RBH | 1.560589 | 4.691043 | 8.018344 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027430 | RBH | 0.343362 | 55.184578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027490 | RBH | 2.121230 | 42.031723 | 28.450714 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027240 | RBH | 1.612469 | 115.267517 | 97.385551 |
