Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0025650 | OGI:07060020 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:28419047-28422007 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacaggccgcggtgacaacatggccaaaaacaacaacgtgaaaggtgaaaccaacctcagaacctctgcagttgaaaaaaataactggaaagctgataccaaagtacacaccgtaacgtatcttctcaatgtcaatggtatcttggggaacacgctcaataagccgattagtatttgcaaaaatggaagcttctcaaatttgtgtgatttaattacaggtacgtacgtactgatccgctttgtgcagttgctgttgttattttgttctgaaatgtcaaatgtgatacaaaggcaagctgctgcgggtgctcgtgctcccggaaccggctcctctgactttggcatcataagtcaggaaagcacagtaatttaagtcttacgctacagtgcaaaacagtaaaagttattgtatagaggtactttgcaccgtactataccgattgatctcgttcgtttactttgaatgactaaaaatacctccaaagtcatgccagtgtagctctctgactacactttacacaggatctcattccctcccgctctcgcttgagctgcacagtggattgctctgcttcgttggacttggagtaggcagtatggcaaggccgtctcccgttgaggcgagcggtggtccggtgatgggagacatcaccggcgccagaggagagcaccgcctccaaatgccgccggctcacggcggcggccggcaagggcggcaggtagccgcgccggagaagtggctgaatcgcttcgtccgcgtggtggcgctgatggagaggacgggcaacgcgctcggcacgctggccttcacctgggctaccgtcatcctactcggcggctaccccaccgtgctcgactcgaagaacgactattggttcacgacagtcatcgtattcatagaagccgcaaggtatgcaactacattaggccattcccaacccaacacactggacatagttttcgggcctgtttactttgatgccgaaaaaaaccttaccaaattttggcaatggtattgttgccaaaattttgacaacttaccaaaattttggtaggatttcttatatagttactaaaatttggcagcaaactaaatgtagccatttttttagtaactttatcaaaatttggtaaggttgaaaataacatcaaagtgaacagtcccttcataaactccacatcattaaaaaaagtagtactagacacaagatgttgtatagatttcctcatttatttacttgctacatcacttttcatccttggcagcttatttaatgctatgtcttaatcattgggttgggaatggccttatagtctttagttcccaaattttttttttcaaaaacgtgacatcaaatctttgaatatatgcatggaacagtaaagatatctcaacattaaatatagataaaaagaaaaaactactggcacaatttgcaatggaaatcgcgagatgaatcttttgagcctaattggttcatgactagccataagtgctacagtaacctacatgtgctaatgacggcttaattaggctcaagagattcgtctcgcggttttcaggcgagttatgaaattagttttttcattcgtgtctgaaaaccccttccgacatccgatcaaacatccgatgtgacacccaaaaattttcttttcacgaactaaacataccctatgtacatgtgattttgtttagcgtacgtcaatatgggtgaggacatattacgtgaaaatgagctaagagttaataattcgtgaaaatagtacataaaggttttatatattcataaaaaaattacttgagattgatgtatatgaaatacattcttaccaaaactcaactttatatgggagtaaaaaataaataaatttcaggtgaatagtgacagtgtactattcatctgaaatttttctttttgtttctttcaaatgaagttgagtttggacctgaaatttggcaagattctacacctatctaaattttttcataaatttacaaaacttttaaatatgattttcacgaattttcaacactcgtttttacatgatatttcttcatgcgtgttatactactagcagtacagcaatatgggatatgaacactgttttttcttttctttttttttcgagaggacaagcacgggtaaaaaaaattcccttgaaagaacgtctcatcttttcaaattcaaattcaatatgcacaagttaaaatggaaaggataaattggatgcacttacttgccagtttagttatgtctatgtttggattatggccatttctagccgggcccttttttttgcaattttgtattattttttacaacaaattggctagtctttatttggtttgctactaaagttgcttcttaacatttaaatctaagccaaataatttggcaaggtacttcctccgtttcatattataaggctttctgtctagattcattaacacctatataaatgtgggcaatgctagaaagccttataatatgaaacggagggaatagtttttttctttctataagcaaaacaaataacaaatattttgtcatcgcctttttttctttttttttgcttggttgagattggctacaaacttaccgttcatattaccccctcgattttttaatttgtactccaatacctgcagtgttgtcaggctagtattatatggttttggtttaaccctttctttaattacaccatactcgtgcttcaggatgttcagcagcgacaaatccgattaccagttgttcttccgagcaagaggtgctttcagattccttggtggcaacggactgatcgtgatcgtattcttttgggatgcactggcaatgctgggcatggctgcttcgaacttgcatctctgggcactactgttactttcaatcttgttaatactggtactagttgcgtttggacagtttctacgagcagctcgaaggtcacagagctgtaa
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| CDS seq | atgacaggccgcggtgacaacatggccaaaaacaacaacgtgaaaggatctcattccctcccgctctcgcttgagctgcacagtggattgctctgcttcgttggacttggagtaggcagtatggcaaggccgtctcccgttgaggcgagcggtggtccggtgatgggagacatcaccggcgccagaggagagcaccgcctccaaatgccgccggctcacggcggcggccggcaagggcggcaggtagccgcgccggagaagtggctgaatcgcttcgtccgcgtggtggcgctgatggagaggacgggcaacgcgctcggcacgctggccttcacctgggctaccgtcatcctactcggcggctaccccaccgctagtattatatggttttggtttaaccctttctttaattacaccatactcgtgcttcaggatgttcagcagcgacaaatccgattaccagttgttcttccgagcaagaggtgctttcagattccttggtggcaacggactgatcgtgatcgtattcttttgggatgcactggcaatgctgggcatggctgcttcgaacttgcatctctgggcactactgttactttcaatcttgttaatactggtactagttgcgtttggacagtttctacgagcagctcgaaggtcacagagctgtaa
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| Protein seq | MTGRGDNMAKNNNVKGSHSLPLSLELHSGLLCFVGLGVGSMARPSPVEASGGPVMGDITGARGEHRLQMPPAHGGGRQGRQVAAPEKWLNRFVRVVALMERTGNALGTLAFTWATVILLGGYPTASIIWFWFNPFFNYTILVLQDVQQRQIRLPVVLPSKRCFQIPWWQRTDRDRILLGCTGNAGHGCFELASLGTTVTFNLVNTGTSCVWTVSTSSSKVTEL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0025650 | OsLima_07g0025650.01 | Chr07 | 28419047 | 28422007 | + | NAM | ||
| CDS seq | atgacaggccgcggtgacaacatggccaaaaacaacaacgtgaaaggatctcattccctcccgctctcgcttgagctgcacagtggattgctctgcttcgttggacttggagtaggcagtatggcaaggccgtctcccgttgaggcgagcggtggtccggtgatgggagacatcaccggcgccagaggagagcaccgcctccaaatgccgccggctcacggcggcggccggcaagggcggcaggtagccgcgccggagaagtggctgaatcgcttcgtccgcgtggtggcgctgatggagaggacgggcaacgcgctcggcacgctggccttcacctgggctaccgtcatcctactcggcggctaccccaccgctagtattatatggttttggtttaaccctttctttaattacaccatactcgtgcttcaggatgttcagcagcgacaaatccgattaccagttgttcttccgagcaagaggtgctttcagattccttggtggcaacggactgatcgtgatcgtattcttttgggatgcactggcaatgctgggcatggctgcttcgaacttgcatctctgggcactactgttactttcaatcttgttaatactggtactagttgcgtttggacagtttctacgagcagctcgaaggtcacagagctgtaa
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| Protein seq | MTGRGDNMAKNNNVKGSHSLPLSLELHSGLLCFVGLGVGSMARPSPVEASGGPVMGDITGARGEHRLQMPPAHGGGRQGRQVAAPEKWLNRFVRVVALMERTGNALGTLAFTWATVILLGGYPTASIIWFWFNPFFNYTILVLQDVQQRQIRLPVVLPSKRCFQIPWWQRTDRDRILLGCTGNAGHGCFELASLGTTVTFNLVNTGTSCVWTVSTSSSKVTEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0654700 | SBH | 0.0 | 0.000000 | 0.200645 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46130 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0654700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025980 | SBH | 0.054827 | 2.017351 | 2.157070 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026070 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025560 | SBH | 0.049186 | 0.537736 | 0.329784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025640 | SBH | 0.016138 | 0.021481 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025890 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0448000 | RBH | 0.0547405 | 0.2868915 | 0.1132635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026370 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0460300 | RBH | 0.1575435 | 0.5740795 | 0.556417 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025610 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025900 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0040090 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025650 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025580 | RBH | 0.0 | 0.0 | 0.0 |
