Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0025500 | OGI:07075380 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:28211266-28213407 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caataatcagtaaataaaatctttatagacaacctttcaccgtttcacgcaacagtcattttcagaggtttacataccattgccaactctataactgcttctcgtacactcagattgcatctcaatcaacttgtttttaatctccaaattaagaggatcctcttcattcaaccattctcttagactagatcacataacatttctcggattttatatatacatgttacttgatcatgggtgcgtcaagcaatcctatgtctgagtcaacaggcaaaatgacttcatttgataaatccagaagccaaaacaatcatccgggttgcttatctggacactgccgggtagctgaagacctacgggttcaggctttatacatgcagaattcagtgtattctttaagcagaaaccgtacccgtagcttcaggaatggaagagtacatttcgtgccgcgcaacgaggaaatcattctccggccgtacggtgttccacgcccggtaggccggcggcgccgccgcaaccaatgaccaatcaccaaatccaacacctctggagtttggagtttactctgcatccaaacaaacaaattcaattgaatttcagtgcatcgaattctactgagaaaccggcagcaattacaataaaaaggtaactcttgtactacacatcactcctcatggttcatggactttggcaatttagcaccacttgacaataagtaataacatgatggtatattttacctcttccgtttgttttttttctgtaatgcgtacaactcttaggtagatagagaggaagatgccatcagctgtgacattttcctagaagatgaacattggcatgtcagtcaagaaaactatgctccagctctatcgggagaataatacaaataaagggaacttcgcatgcgtagtaatcgaagttgctgctgactcatcattggattaaccggtgctctcgtgtcagctgtctcctgattgcctacaaccctgccccttcaggaggtatactttagaaagtgcatcagtattcttcgtagcatatacagaattccagatagatacatcaaagaacctgaactgattcatgagtatgtcgacacaaacagagaatgtactggtagatgtagcagagagagttgcccaacctgaggcgagctggcatagcgcgatgccagaagagcagctgaattgctttgttcgagttgttgcctccgttgagagggtgggcaacgccctcggcacactggcgttcacctgggccaccattgtcctccttggaggatacccaactagtatcacctgtgtggactttgcgtacgccacagcattgttcttcttagaagctgcaaggtatgcatcaatgatcagtcacatgtgataatgttagtcacaaacctgtgtactcatgttatcactacacttagcattcgtaagaccatgatcagattatctagtacttagcaatttatcaagtccaaaaggattgttgttcatttggttgatatatcatcctgtttttctcggtttccatgtgatgcaccgtgcatattttcaggatgttctgccccaacagatcagagtaccaacttttcttcaggactcgcggagctttgagacctttctcatggaatagagtgattgtggtgatatgtttgaataatgttggtttattcctcccaagcaccaaaagtaaagaattgtcggtttccatattgatgcttgttgctgccaccttgcctttcccaggagttcacaaacttaaaggtggtccattacgcaatgctatatcactattgagccccttggttgtaatggtgctgttgatcccctgtctatggtgcaaagatacaacaccagcaccaaaatggcatttgctactcctagctagggccttttacacactgttactggtcatggtgttgctactaacgatcagcaaattgcagtttccaagcatcgtcagactagttcataggcttgtcatccacaaatcattatcttgccaccaagtcattttgttttcttgcatgtaccttgcagcagtgcccttggtgttcttttctccatttttgttagtaatgatagtattcgctctgttgacagcaatgtgtggcagtttacagattccagctgcagtcat
More
|
||||||||||
| CDS seq | atgactgcagctggaatctgtaaactgccacacattgctgtcaacagagcgaatactatcattactaacaaaaatggagaaaagaacaccaagggcactgctgcaagacaggggatcaacagcaccattacaaccaaggggctcaatagtgatatagcattgccttctaagaagaacaatgctgtggcgtacgcaaagtccacacaggtgatactagttgggtatcctccaaggaggacaatggtggcccaggtgaacgccagtgtgccgagggcgttgcccaccctctcaacggaggcaacaactcgaacaaagcaattcagctgctcttctggcatcgcgctatgccagctcgcctcaggttgggcaactctctctgctacatctaccagtacattctctgtttgtgtcgacatactcatgaatcagttcaggttctttgatgtatctatctggaattctgtatatgctacgaagaatactgatgcactttctaaagtatacctcctgaaggggcagggttgtaggcaatcaggagacagctga
More
|
||||||||||
| Protein seq | MTAAGICKLPHIAVNRANTIITNKNGEKNTKGTAARQGINSTITTKGLNSDIALPSKKNNAVAYAKSTQVILVGYPPRRTMVAQVNASVPRALPTLSTEATTRTKQFSCSSGIALCQLASGWATLSATSTSTFSVCVDILMNQFRFFDVSIWNSVYATKNTDALSKVYLLKGQGCRQSGDS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0025500 | OsLima_07g0025500.01 | Chr07 | 28211266 | 28213407 | - | NAM | ||
| CDS seq | atgactgcagctggaatctgtaaactgccacacattgctgtcaacagagcgaatactatcattactaacaaaaatggagaaaagaacaccaagggcactgctgcaagacaggggatcaacagcaccattacaaccaaggggctcaatagtgatatagcattgccttctaagaagaacaatgctgtggcgtacgcaaagtccacacaggtgatactagttgggtatcctccaaggaggacaatggtggcccaggtgaacgccagtgtgccgagggcgttgcccaccctctcaacggaggcaacaactcgaacaaagcaattcagctgctcttctggcatcgcgctatgccagctcgcctcaggttgggcaactctctctgctacatctaccagtacattctctgtttgtgtcgacatactcatgaatcagttcaggttctttgatgtatctatctggaattctgtatatgctacgaagaatactgatgcactttctaaagtatacctcctgaaggggcagggttgtaggcaatcaggagacagctga
More
|
|||||||
| Protein seq | MTAAGICKLPHIAVNRANTIITNKNGEKNTKGTAARQGINSTITTKGLNSDIALPSKKNNAVAYAKSTQVILVGYPPRRTMVAQVNASVPRALPTLSTEATTRTKQFSCSSGIALCQLASGWATLSATSTSTFSVCVDILMNQFRFFDVSIWNSVYATKNTDALSKVYLLKGQGCRQSGDS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.062149 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0653800 | SBH | 0.0 | 0.000000 | 0.192344 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0653800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025780 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025630 | RBH | 0.192427 | 0.424607 | 1.180532 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025660 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025580 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025720 | RBH | 0.000000 | 0.000000 | 8.840851 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026170 | RBH | 0.066379 | 0.0 | 0.831499 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025600 | RBH | 0.000000 | 0.074243 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025680 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025500 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025730 | RBH | 0.0 | 0.0 | 0.062782 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025400 | RBH | 0.175412 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025370 | RBH | 0.117617 | 0.0 | 0.531516 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025430 | RBH | 0.0 | 0.000000 | 3.792256 |
