Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0024470 | OGI:07073390 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:27525527-27530050 | ||||||||
| Gene Symbol | CIPK21, OsCIPK21, OsSnRK3.24, SnRK3.24 | ||||||||||
| DNA seq | atgcaaaagacaagtatgaatccggtcaccgacccggtcgcggctgcaacgggaagagtcgccattcggcaactcccaataaaaacccagccgaattcccaaagtctcacgcccttcctccaactccccccaaagccgccacctaaccttctcttctcctctcctctcgcgagtgtcgaactccgccaccgcgcgcgcgcgcgccggagacggcggccctcccatccgcggcgggcgccggcaatgcggatggggaagtacgagatggggcgggcgctgggagaggggcacttcggcaaggtgaagctggcgcgccacgccgacaccggcgccgccttcgccatcaagatcctcgaccgccaacgcatcctcgccatgaagatcgacgaacaggtgaattaaccttgattgattgctcatccgggttcctgttcctttgcttggccggctggttaattaatttcttgctcagataaagagggagatcgccacgttgaagctgctcaagcaccccaatgtcgtccgcctccacgaggtgagcttcgcaacccacagagtttcagcagaaatcctttcttttgtgTttttttttactctcttgctttcttcctcttgctgttcaacgcctcttgcgccattgatgttgccgtctgaactcctctccggctgcgatatagcactaattttttttttaacttggctgctaatacctctctttggataactctcccccttgtgtgcagtagaataattgtcctttttactgtttcttgacctggacatctgcataaacaattgagcacacgaaatgaccacccaatatgtttttttcctgctcatggaagtagtaggacaaggcaaagggtctttcagtttcagcaagcaatattatttccctttccttttactgcgctcttgcttctcggagtattttagtcgggtgatgatgcgcccgtgcagacttgggtttatcagattcccctgcagcaaaaacaaacttgggttgtcacgtcaaaccctgcgaatctcatcacggagaatcgcccactggagcattggaatacttgctgatgagatcatgtggctattaggagcaaggttcatgtgccatctgagccgtacaatctgatgatccgatggccgtcgttgctctacatgctctgaagcctgcctggttaagacccaatccagaagccaccaaaagagctttctgacgaggttggccgacatcacccaataatcagagcgatcttttactagtcacttttaggcaactttcagtcctgcaaggcagagaaaacacagaaaggctgcacgacatgagcccaccacagcaatacgtcatcatatctataatgcaattcagaagggaaagtgttaaacgtggtggttttggtaccatgtttgtaagtgttaggttcaccgaatgattgcattagtggataaatgtccgtgagaggcttacttcttgcaagcggaagattagaaaatggagctcctgactctaaagcaaaaacatctgcgcaccagtgtgactgcccaatgatttggtactgcccaatgatttggtagagagagagagagagagagagagagatgttgcggctgttgatcagatctctgcctcccgattgttcattaaaccttgtttctgtaggagatgcaattgacatcaagaattagctggggctaaattcctccagtgaaaaccttccccctatccatccaaacctgattccctgaaacatggaattaatctttttattgttgcagtttcagaaatgtcaaaaagaaactacttttcagttgtacacatccacattttgtccttgggaagcctgagatagattactggtttttcccctgcaggtttcagctagcaaaaccaagatatacatggttcttgaatatgtaaatggaggagagctattcgacaaaattgtaaggattttgcttctcattttaagcatgcattaatgaatcaaaaacaaccgattgtgattagggttttacacaactctaacaatctgttgatgcatgacaggcattaaagggtaagttgtcagagaaggaaggaagaaaactcttccagcagctgatggatgctgtaagctattgccatgagaagggagtttatcatagggaccttaaggtgactacacagtatcactgatctatctttttcatattttaattgtaagcaagaaaataaggactgatccaaatggaacacacgattaacatatgctattttctgtgtcttctgtagccggagaatgtcctagttgatgcaaaaggaaacataaaggtttcggattttggactaagtgcccttccacaaaatcaacgggtatggaattttctcttacatcaaatcagctgaataaattcgttggtgtctaaaataaggctccaatttcagaaagatggattgttgcataccacatgtggcagccctaactacatcgcccctgaggtaagaattaagcattcataaactgaacctatcattgttcacggtctttagtttagtgcatatggaggatgtagttctgacagaggtatatacaggtccttctcaacagaggttatgatggctctttgtccgacatatggtcttgtggggttatcctatatgtcatgcttacagggaatcttccatttgatgaccaaaatacggttgtcctttatcagaaggtataaagcaaggaatcaaagattacctcagcaaaaatttggctaattttatttggctcaatatctcaatttaattttgtatccagattctgaagggggatgctcgtattcctaaatggctttccccaggtgcccaagatatactgcgaaaaatcttggatcctaacccaattacacgcttagatataactggaataagggcacatgagtggttcaggcaagattatactcctgctatgcctttcgatgatgatgacgacaacaatatcagtgatggcaacctacatatgactgaggtaacccaacgttaggtgtactttttgtttgccatataatccattgctttaactgaatggtatagattgaactcaatctgtgttctctctcgcttttttttttcatggtgaagaatcaagatattgaaaccagcccagcaatcagccaaatcaatgcattccagctcattgggatgtcctcatgccttgatctatctggattttttgagaaagaagtaagtttgatctttctttcttgaccctatttgctaattccttaactaacacctacattaaatcctagcctgctagccaaaacagacacacccaaaggtcaagtaggccgtaaatggaagggtcccatgtgaactcatcagaccataaatcatgaaataataagttagtgaccagcaatttgacaaagccatggattgttgtcttatatatccgatgtccctactgagacctctgctacgttaatgcccttaactcagacatgtgactttgttacaggatgtttctgaaaggaaaatcagatttgtatcaaattattcccctacttctctatttgagaagattgagagcactgtcacagaaaagggtttccaggtacagaagaacagtggcaaggttagtgacctcagatgtatctacctgtaatattaatatgagctatacttacactgctcatgcatagatgttaaactgaaacttatgctatcatgtactacagctaaaagtgatccaagtttgtaaagaaccagcaaatccaagaggacatggaaatttattgatttctgctgaggtacttctatcacattgaacatccatagcaataaataatcaatagtgtgcaatgtgccaatgtgtttctgttaaacatccatgattcttaatattgatgtactgcgttttcaggtgtttgagatcaatgaatctctttatgttgttgagctaaaaaggtcatctggggattgttccctttacagacaggtatttctccctcccttgctgaatcagtattttaattcattttctgatggaaaatttaaactaaattattttgtcctagagcattgttcttacttctcaaacttccaatatgcaatttaacatatatggtattgtttatgttgcagctatgtgcgtcactttcagaagacttgggcatatgcaaaaggcaacagcttttgaagaaagattctatgagacaagacctttgtcgatataacagtagcttttgataaaagggtctctctagcttttagttgtgaaggctctagcatttttaacaagagcccccaatacaacgacgtatgacacagttttgtaaaattaaactgtaaatacaaaacaatccaattgtacaccgaaaagagtataccgatcatccaagtatttcctttaggagttcattagtttgtgttctttttgcctttactggtaaatcgctacctcctgggcaaattggctactgacagtgtataaaagtatgatgtagacaatctaagtgtacataaatagttacctcatcttgtgttcctttgaagtt
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| CDS seq | atgcaaaagacaagtatgaatccggtcaccgacccggtcgcggctgcaacgggaagagtcgccattcggcaactcccaataaaaacccagccgaattcccaaagtctcacgcccttcctccaactccccccaaagccgccacctaaccttctcttctcctctcctctcgcgagtgtcgaactccgccaccgcgcgcgcgcgcgccggagacggcggccctcccatccgcggcgggcgccggcaatgcggatggggaagtacgagatggggcgggcgctgggagaggggcacttcggcaaggtgaagctggcgcgccacgccgacaccggcgccgccttcgccatcaagatcctcgaccgccaacgcatcctcgccatgaagatcgacgaacagataaagagggagatcgccacgttgaagctgctcaagcaccccaatgtcgtccgcctccacgaggtttcagctagcaaaaccaagatatacatggttcttgaatatgtaaatggaggagagctattcgacaaaattgcattaaagggtaagttgtcagagaaggaaggaagaaaactcttccagcagctgatggatgctgtaagctattgccatgagaagggagtttatcatagggaccttaagccggagaatgtcctagttgatgcaaaaggaaacataaaggtttcggattttggactaagtgcccttccacaaaatcaacggaaagatggattgttgcataccacatgtggcagccctaactacatcgcccctgaggtccttctcaacagaggttatgatggctctttgtccgacatatggtcttgtggggttatcctatatgtcatgcttacagggaatcttccatttgatgaccaaaatacggttgtcctttatcagaagattctgaagggggatgctcgtattcctaaatggctttccccaggtgcccaagatatactgcgaaaaatcttggatcctaacccaattacacgcttagatataactggaataagggcacatgagtggttcaggcaagattatactcctgctatgcctttcgatgatgatgacgacaacaatatcagtgatggcaacctacatatgactgagaatcaagatattgaaaccagcccagcaatcagccaaatcaatgcattccagctcattgggatgtcctcatgccttgatctatctggattttttgagaaagaagatgtttctgaaaggaaaatcagatttgtatcaaattattcccctacttctctatttgagaagattgagagcactgtcacagaaaagggtttccaggtacagaagaacagtggcaagctaaaagtgatccaagtttgtaaagaaccagcaaatccaagaggacatggaaatttattgatttctgctgaggtgtttgagatcaatgaatctctttatgttgttgagctaaaaaggtcatctggggattgttccctttacagacagctatgtgcgtcactttcagaagacttgggcatatgcaaaaggcaacagcttttgaagaaagattctatgagacaagacctttgtcgatataacagtagcttttga
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| Protein seq | MQKTSMNPVTDPVAAATGRVAIRQLPIKTQPNSQSLTPFLQLPPKPPPNLLFSSPLASVELRHRARARRRRRPSHPRRAPAMRMGKYEMGRALGEGHFGKVKLARHADTGAAFAIKILDRQRILAMKIDEQIKREIATLKLLKHPNVVRLHEVSASKTKIYMVLEYVNGGELFDKIALKGKLSEKEGRKLFQQLMDAVSYCHEKGVYHRDLKPENVLVDAKGNIKVSDFGLSALPQNQRKDGLLHTTCGSPNYIAPEVLLNRGYDGSLSDIWSCGVILYVMLTGNLPFDDQNTVVLYQKILKGDARIPKWLSPGAQDILRKILDPNPITRLDITGIRAHEWFRQDYTPAMPFDDDDDNNISDGNLHMTENQDIETSPAISQINAFQLIGMSSCLDLSGFFEKEDVSERKIRFVSNYSPTSLFEKIESTVTEKGFQVQKNSGKLKVIQVCKEPANPRGHGNLLISAEVFEINESLYVVELKRSSGDCSLYRQLCASLSEDLGICKRQQLLKKDSMRQDLCRYNSSF |
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| Function | CBL-interacting protein kinase 21 [UniProtKB/Swiss-Prot:Q0D4B2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0024470 | OsLima_07g0024470.01 | Chr07 | 27525527 | 27530050 | + | NAM | ||
| CDS seq | atgcaaaagacaagtatgaatccggtcaccgacccggtcgcggctgcaacgggaagagtcgccattcggcaactcccaataaaaacccagccgaattcccaaagtctcacgcccttcctccaactccccccaaagccgccacctaaccttctcttctcctctcctctcgcgagtgtcgaactccgccaccgcgcgcgcgcgcgccggagacggcggccctcccatccgcggcgggcgccggcaatgcggatggggaagtacgagatggggcgggcgctgggagaggggcacttcggcaaggtgaagctggcgcgccacgccgacaccggcgccgccttcgccatcaagatcctcgaccgccaacgcatcctcgccatgaagatcgacgaacagataaagagggagatcgccacgttgaagctgctcaagcaccccaatgtcgtccgcctccacgaggtttcagctagcaaaaccaagatatacatggttcttgaatatgtaaatggaggagagctattcgacaaaattgcattaaagggtaagttgtcagagaaggaaggaagaaaactcttccagcagctgatggatgctgtaagctattgccatgagaagggagtttatcatagggaccttaagccggagaatgtcctagttgatgcaaaaggaaacataaaggtttcggattttggactaagtgcccttccacaaaatcaacggaaagatggattgttgcataccacatgtggcagccctaactacatcgcccctgaggtccttctcaacagaggttatgatggctctttgtccgacatatggtcttgtggggttatcctatatgtcatgcttacagggaatcttccatttgatgaccaaaatacggttgtcctttatcagaagattctgaagggggatgctcgtattcctaaatggctttccccaggtgcccaagatatactgcgaaaaatcttggatcctaacccaattacacgcttagatataactggaataagggcacatgagtggttcaggcaagattatactcctgctatgcctttcgatgatgatgacgacaacaatatcagtgatggcaacctacatatgactgagaatcaagatattgaaaccagcccagcaatcagccaaatcaatgcattccagctcattgggatgtcctcatgccttgatctatctggattttttgagaaagaagatgtttctgaaaggaaaatcagatttgtatcaaattattcccctacttctctatttgagaagattgagagcactgtcacagaaaagggtttccaggtacagaagaacagtggcaagctaaaagtgatccaagtttgtaaagaaccagcaaatccaagaggacatggaaatttattgatttctgctgaggtgtttgagatcaatgaatctctttatgttgttgagctaaaaaggtcatctggggattgttccctttacagacagctatgtgcgtcactttcagaagacttgggcatatgcaaaaggcaacagcttttgaagaaagattctatgagacaagacctttgtcgatataacagtagcttttga
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| Protein seq | MQKTSMNPVTDPVAAATGRVAIRQLPIKTQPNSQSLTPFLQLPPKPPPNLLFSSPLASVELRHRARARRRRRPSHPRRAPAMRMGKYEMGRALGEGHFGKVKLARHADTGAAFAIKILDRQRILAMKIDEQIKREIATLKLLKHPNVVRLHEVSASKTKIYMVLEYVNGGELFDKIALKGKLSEKEGRKLFQQLMDAVSYCHEKGVYHRDLKPENVLVDAKGNIKVSDFGLSALPQNQRKDGLLHTTCGSPNYIAPEVLLNRGYDGSLSDIWSCGVILYVMLTGNLPFDDQNTVVLYQKILKGDARIPKWLSPGAQDILRKILDPNPITRLDITGIRAHEWFRQDYTPAMPFDDDDDNNISDGNLHMTENQDIETSPAISQINAFQLIGMSSCLDLSGFFEKEDVSERKIRFVSNYSPTSLFEKIESTVTEKGFQVQKNSGKLKVIQVCKEPANPRGHGNLLISAEVFEINESLYVVELKRSSGDCSLYRQLCASLSEDLGICKRQQLLKKDSMRQDLCRYNSSF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.048326 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0637000 | RBH | 0.000000 | 0.000000 | 1.002389 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44290 | RBH | 0.000000 | 0.051283 | 0.264627 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0637000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024710 | RBH | 0.086990 | 4.106874 | 1.778089 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024770 | RBH | 0.000000 | 0.528854 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024630 | RBH | 0.0 | 6.099645 | 2.326793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024540 | RBH | 0.000000 | 0.243269 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024670 | RBH | 0.0 | 7.436094 | 5.128426 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0434800 | RBH | 1.1902855 | 9.455885 | 5.4516465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025200 | RBH | 0.102604 | 0.694170 | 0.359194 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0446000 | RBH | 1.9881035 | 9.3946875 | 8.2218605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020050 | SBH | 0.249928 | 0.161915 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024590 | RBH | 0.193426 | 2.102412 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024520 | RBH | 1.244926 | 13.644146 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024730 | RBH | 0.0 | 0.145317 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024430 | RBH | 0.000000 | 2.624848 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024410 | RBH | 0.0 | 0.345107 | 0.676954 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024470 | RBH | 0.0 | 2.095994 | 1.318509 |
