Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0023950 | OGI:07072280 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:27073109-27076706 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctctcgtagcaccgagcatcacatcgtatatctgttgatttataaaatatgaggtaccttttgtgataatgccgtgacaagaagagtttttgactagttgctatagatttacagagttaagtcttcagtagaaaagtacatttgacaaaagagtacacttctaatagaacatttggcaaagtctatcatacattaatacctctccccgttggaaatcgtacgtcatcgtacgagacctgcacctagtgctttgatgacttcacgcaggttgtcgttgatgctctaacagagagtaagatggtcgcgcatgtaaccgctaattttcaactaaagacgtgacacttaactagactgagacaacgggtaccgatgaattccaaccccatccatttctatcgttagatgaccaatgactttatctaggttcaagctcagtgatcgacgaatgaggccccgaaggtaatggaacgtccattgtttccgtgtagctcctgttcctgccaaagatatatgccggcctgtagggtgcttgcagagtgacggtgccactactgagcataaggatgatcgctgacatcggcggccggtccactgggttttgctggacgcacagaagcccaatgttgatgcatttcaggatatctcctctagggtagtggttgcccagagaaggatccacaatctctgtaactgttccctcattccagtgcctccacacctatcataccagttgctgattagcattaagaaaagctactacttcctccgtttcacaatgtaagactttctagcattgcctacattcatttagatgttaatgaatctagacatgtatatgtgtttaggtttattaacatctatatgtatgtgggcaatgctagaaagtcttacattgtgaaacggagggagtacaaaatactaattgcatgtgaggagtgtttgcttacaagactgaagagatcttcgcaatgttcagagaccaccgcataactgttccttcgccctgtcacgatctccaagactaggacgccgaagctgaagacatccagcttcgttgagtactgcccccgcatagcgtattccggagacatgtaaccactgtgacaagattcagttgaaagttagcttatagaagtactaggaggtaccactttttttaacgtaaaatttggtactcatgataattccatgacaagtgaaacgaattagagcaagtgtacagatcaattacagcgttccaacaacgcggcttgtggcattcctggtttgatcatctccaaagatctttgccatcccaaaatctgcaatcttgggtttcatgtctgaatcaagtaaaatgttgcttgctttcaaatccctatggattatcttcaattgagaatgttcatgcaaatattgtaggcctcgagcaattccatatagaatattgtatcgctttccccagtcaagttgtttgcttttctctggatctagtgccaaatgacaaaaatttcagtttaaataacaatttattcacaatgttagataaaattcaagtgaagacaagtaccgaaaagaacagtatccaagctcttgttgggcatgtactcataaacaagcaccttctctccttcttccaagcagacaccaataagcctaacaagattcttatgctgcaacttggctaccaaagacagttcattcttcaattgtcctagtccttgattggagcaattggaaagcctctttactgctacttcttgtccatcagggaagacaccctgagcaatcaaacgctagatcttattaaatgatttgacagaagatacgtctttttttagtgtgcgaataaattaacattggttctcctcgtgtcaaagggggaaaatttgcacaagaatatataccttaaaaacaacaccaaatcctccttcaccaagcctattgctttcatcaaagttggatgttgctgattgcaatgttgaaagatcaataaagatagattcaaaatcttcgaggtcctctgtattttctgcaccattgaagtggaatagccgtaaaaatatattttattagcactattccattttgtgtggcttcacattctttctgttaatgtttttcttccaaaacagataagaatagtgttatatcatgctgtagtgtcttaccgatgagtggtgttttggtcggcaatcttttcttcctccaaatataaaaactaactattatgattgtgagtaatccagcaaatactatcggaagtacaattgcaagaaccggggttgatttctttttgcctggaatacaatgatagataaatctcagtttagtatttcatatttgttgaggaaaaaaaaaagggaatagccaggaggtgctaaacagaaatatttataactgaagggagtaatgatattcttcatatcttttgtgtagcaggttcgatattcattcactattacattgatgaaaacatatgcccatcatcttgagaaaaaaaaatcatagcgtatgcctgataagtccatcatgtaaaagatcatacgtcttaaaatatactattccctcagtttttaaatatttgatgccattggtttcttaaacatgtttaaccgttcatcttattaaaaaaatttaagtaattattaattctttttctatcatttgatttattgttaaatatacttatatatatatatatttatttatatatttcacaaaagtttttgaataagatgaacggttaagcatgtaccaaaaaatcaactgtgtcaaatatttagaaacagagagagtatattttagggcggacggagtggactcaccttccatggcaacctgcaggtgcaccatggcgtcgacggtgtagaaagagaagacctcaaaccggaggccgcagcgctcgccgatgaccttccctcccggcgaactggcggcgaagacctgccgggtcatctcctccatggccgacgctaggcacgcgcggcactgcgccggtgtcaggtccggcgtgcactgagccaaggcgtagatcttggagaacggctcgccgtcgaagtagccgccgacgccgacgtcgccggtggcgaaccgcgccgtcgagttggccaccgcgtagtccgcggtggcgtcgaggagctcgccgaccaggcggtagaagcggccggcggcggaggggaccagcttctgcgactgagagccggccacgacgagcttctccggcgagttggtggtggccgcgaggaagtcccggtcggagaagcggacggtgcagatgtcgtcgtacatggcgacgtcggcgtcgccggcgcaggcgtgctccccgtcgcgcatggtctgcgcgacgcagtagttgcaggagcccgcgctcgtgccgccctggcagagcgcgagcgcgtacgcctcgccggcgacggcgagcgtcgcgaagaggagcggggaggaggaggcgttgccggggagggtgcgggcgacctgctggaggctggcatcgaagctgctgttcgccgcgtagcgccggccgctgcagaccacctcggacgccgccggcgccgccgcgaggagggccagcacgaacgccgccgcgagcgcacgggcgccgccgccgtgcat
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| CDS seq | atgcacggcggcggcgcccgtgcgctcgcggcggcgttcgtgctggccctcctcgcggcggcgccggcggcgtccgaggtggtctgcagcggccggcgctacgcggcgaacagcagcttcgatgccagcctccagcaggtcgcccgcaccctccccggcaacgcctcctcctccccgctcctcttcgcgacgctcgccgtcgccggcgaggcgtacgcgctcgcgctctgccagggcggcacgagcgcgggctcctgcaactactgcgtcgcgcagaccatgcgcgacggggagcacgcctgcgccggcgacgccgacgtcgccatgtacgacgacatctgcaccgtccgcttctccgaccgggacttcctcgcggccaccaccaactcgccggagaagctcgtcgtggccggctctcagtcgcagaagctggtcccctccgccgccggccgcttctaccgcctggtcggcgagctcctcgacgccaccgcggactacgcggtggccaactcgacggcgcggttcgccaccggcgacgtcggcgtcggcggctacttcgacggcgagccgttctccaagatctacgccttggctcagtgcacgccggacctgacaccggcgcagtgccgcgcgtgcctagcgtcggccatggaggagatgacccggcaggtcttcgccgccagttcgccgggagggaaggtcatcggcgagcgctgcggcctccggtttgaggtcttctctttctacaccgtcgacgccatggcaaaaagaaatcaaccccggaagaaaagattgccgaccaaaacaccactcatcgaaaatacagaggacctcgaagattttgaatctatctttattgatctttcaacattgcaatcagcaacatccaactttgatgaaagcaataggcttggtgaaggaggatttggtgttgtttttaagggtgtcttccctgatggacaagaagtagcagtaaagaggctttccaattgctccaatcaaggactaggacaattgaagaatgaactgtctttggtagccaagttgcagcataagaatcttgttaggcttattggtgtctgcttggaagaaggagagaaggtgcttgtttatgagtacatgcccaacaagagcttggatactgttcttttcggagatatcctgaaatgcatcaacattgggcttctgtgcgtccagcaaaacccagtggaccggccgccgatgtcagcgatcatccttatgctcagtagtggcaccgtcactctgcaagcaccctacaggccggcatatatctttggcaggaacaggagctacacggaaacaatggacgttccattaccttcggggcctcattcgtcgatcactgagcttgaacctagataa
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| Protein seq | MHGGGARALAAAFVLALLAAAPAASEVVCSGRRYAANSSFDASLQQVARTLPGNASSSPLLFATLAVAGEAYALALCQGGTSAGSCNYCVAQTMRDGEHACAGDADVAMYDDICTVRFSDRDFLAATTNSPEKLVVAGSQSQKLVPSAAGRFYRLVGELLDATADYAVANSTARFATGDVGVGGYFDGEPFSKIYALAQCTPDLTPAQCRACLASAMEEMTRQVFAASSPGGKVIGERCGLRFEVFSFYTVDAMAKRNQPRKKRLPTKTPLIENTEDLEDFESIFIDLSTLQSATSNFDESNRLGEGGFGVVFKGVFPDGQEVAVKRLSNCSNQGLGQLKNELSLVAKLQHKNLVRLIGVCLEEGEKVLVYEYMPNKSLDTVLFGDILKCINIGLLCVQQNPVDRPPMSAIILMLSSGTVTLQAPYRPAYIFGRNRSYTETMDVPLPSGPHSSITELEPR |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0023950 | OsLima_07g0023950.01 | Chr07 | 27073109 | 27076706 | - | NAM | ||
| CDS seq | atgcacggcggcggcgcccgtgcgctcgcggcggcgttcgtgctggccctcctcgcggcggcgccggcggcgtccgaggtggtctgcagcggccggcgctacgcggcgaacagcagcttcgatgccagcctccagcaggtcgcccgcaccctccccggcaacgcctcctcctccccgctcctcttcgcgacgctcgccgtcgccggcgaggcgtacgcgctcgcgctctgccagggcggcacgagcgcgggctcctgcaactactgcgtcgcgcagaccatgcgcgacggggagcacgcctgcgccggcgacgccgacgtcgccatgtacgacgacatctgcaccgtccgcttctccgaccgggacttcctcgcggccaccaccaactcgccggagaagctcgtcgtggccggctctcagtcgcagaagctggtcccctccgccgccggccgcttctaccgcctggtcggcgagctcctcgacgccaccgcggactacgcggtggccaactcgacggcgcggttcgccaccggcgacgtcggcgtcggcggctacttcgacggcgagccgttctccaagatctacgccttggctcagtgcacgccggacctgacaccggcgcagtgccgcgcgtgcctagcgtcggccatggaggagatgacccggcaggtcttcgccgccagttcgccgggagggaaggtcatcggcgagcgctgcggcctccggtttgaggtcttctctttctacaccgtcgacgccatggcaaaaagaaatcaaccccggaagaaaagattgccgaccaaaacaccactcatcgaaaatacagaggacctcgaagattttgaatctatctttattgatctttcaacattgcaatcagcaacatccaactttgatgaaagcaataggcttggtgaaggaggatttggtgttgtttttaagggtgtcttccctgatggacaagaagtagcagtaaagaggctttccaattgctccaatcaaggactaggacaattgaagaatgaactgtctttggtagccaagttgcagcataagaatcttgttaggcttattggtgtctgcttggaagaaggagagaaggtgcttgtttatgagtacatgcccaacaagagcttggatactgttcttttcggagatatcctgaaatgcatcaacattgggcttctgtgcgtccagcaaaacccagtggaccggccgccgatgtcagcgatcatccttatgctcagtagtggcaccgtcactctgcaagcaccctacaggccggcatatatctttggcaggaacaggagctacacggaaacaatggacgttccattaccttcggggcctcattcgtcgatcactgagcttgaacctagataa
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| Protein seq | MHGGGARALAAAFVLALLAAAPAASEVVCSGRRYAANSSFDASLQQVARTLPGNASSSPLLFATLAVAGEAYALALCQGGTSAGSCNYCVAQTMRDGEHACAGDADVAMYDDICTVRFSDRDFLAATTNSPEKLVVAGSQSQKLVPSAAGRFYRLVGELLDATADYAVANSTARFATGDVGVGGYFDGEPFSKIYALAQCTPDLTPAQCRACLASAMEEMTRQVFAASSPGGKVIGERCGLRFEVFSFYTVDAMAKRNQPRKKRLPTKTPLIENTEDLEDFESIFIDLSTLQSATSNFDESNRLGEGGFGVVFKGVFPDGQEVAVKRLSNCSNQGLGQLKNELSLVAKLQHKNLVRLIGVCLEEGEKVLVYEYMPNKSLDTVLFGDILKCINIGLLCVQQNPVDRPPMSAIILMLSSGTVTLQAPYRPAYIFGRNRSYTETMDVPLPSGPHSSITELEPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0023950 | OsLima_07g0023950.02 | Chr07 | 27073204 | 27076174 | - | IsoSeq | ||
| CDS seq | cgacgtcggcgtcggcggctacttcgacggcgagccgttctccaagatctacgccttggctcagtgcacgccggacctgacaccggcgcagtgccgcgcgtgcctagcgtcggccatggaggagatgacccggcaggtcttcgccgccagttcgccgggagggaaggtcatcggcgagcgctgcggcctccg |
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| Protein seq | RRRRRRLLRRRAVLQDLRLGSVHAGPDTGAVPRVPSVGHGGDDPAGLRRQFAGREGHRRALRPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 27075263 | 27075391 | - | OsLima_07g0023950.02 | OsLima_07g0023950.01,OsLima_07g0023950.02 | All |
| A5 | Chr07 | 27075391 | 27075945 | - | OsLima_07g0023950.02 | OsLima_07g0023950.01,OsLima_07g0023950.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.610744 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0628900 | RBH | 24.298771 | 27.433958 | 0.509578 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43570 | RBH | 14.669927 | 16.813395 | 0.115450 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0628900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024210 | RBH | 2.625039 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024260 | RBH | 1.981334 | 0.0 | 0.572380 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024130 | RBH | 14.123729 | 0.894627 | 2.252965 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024050 | RBH | 1.472784 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024180 | RBH | 84.181252 | 0.0 | 1.003671 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0428000 | SBH | 67.448244 | 0.191819 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024700 | RBH | 7.100416 | 0.0 | 0.196270 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0438700 | RBH | 18.5988445 | 0.0178485 | 0.0025455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018530 | SBH | 0.665661 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024090 | SBH | 13.253127 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024020 | RBH | 146.045807 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024200 | SBH | 22.754297 | 0.000000 | 7.114478 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023950 | SBH | 11.553581 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017930 | SBH | 1.773742 | 0.0 | 1.649639 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023910 | SBH | 25.614790 | 6.623271 | 0.536154 |
