Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0023940 | OGI:07072240 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:27066098-27070017 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atacgtcttcataatataatacagatattatctctcaagacaagtagtttgtcttacaattaagtactacatatgtcctgaaaatacaataaatacacaaccatggagtcatctaactcgaattacagatcacatagttatttcctcgtgcatcaaaatacaaacaaggaatgcatatgacttatcttggttcaggctctgttactgtcacatcatttagtgacatggccatcgagtgcttggccgtggagtcggttacagggtatggttgggaatacatgcttgaaccaatattaatattgcccaacatttctgtgaaaaatgcaggtctcgatggagctttagctgaaactgtattgccgtcaagcatgatattgatcattgacagagttggcctatccatagggtcctcttggacacatacaagtccaacatgaatgcacctcaaaatctcatctagagaggaagaatcactcctcaaatatgggtcaaccatctccgtgatagttttcattgcccaatgttcccatacctgcatcaatataatcatgcttgttagattaaattgtcgttgccactagaagtagctagcgattgtgaggtaaggtaagatactcacgaggctcagaagatcaacagcttgttcagagttgtaggagtcactgttttttcttcctgtgatgatctccaaaagcaacacaccgaagctgtatacgtcagactttattgaatattgcccacgtaaagcgtattctggtgccatgtatccactacaagagacaaaatatcgtcaaatgtaaatatgtaatcatttaatcatttggagcatgctattaatatagtatgatacttactaagttccaacaacgcggttagttgtttcttgtgactgatcatctccaaaaagccttgccaagccaaagtctgaaatcttagggttcatatttgcgtccagtagaacgttgcttgcttttagatcacggtgaattatcttcaattgagaatcttcatgcagatattgcaatcctccagtgattccttttattatcatgaacctctttgcccaatcgatttgtttgcgtttctcagggtctgcagttcagtaaaaaacatcatcatcatgtgaacattataattctattttcaatcttataggaacaaatcaatatattttaattgaatgcattccaataaagatgattataccaaaaagaaatgtgtctagacttttgttaggcatgtattcatagacaagtagcttctcttcttgttccaaacaaactccaacgagcctcacgagattcttgtgctggagcttggcaattaaaaccagttcatttttaagctctcctatgccttgtccagaactctgagagagccttttcacagctatggtttggccaccgggaaaggatccctgtacaaattaacatgttattgactaaaaccttatgctacaaccgaagaaacttaataaattaatccacaatcatgtaccagaaattcatgtccatataccttgtaaactgcaccaaatcctccttcacctagtttgttgttttcagcaaagttatctgtggcaatccgtagtgtcggtagatccataataagagattcgatgttttgaatgtcctcagaacgagaagaatctgtgtcatggtacgtaagagcaaacaactcatcagtttaaaatatatactctctccggagaaaaaaatatatttgatgacaaggacaagatttgtttaaactttaaagttttgatcatcaaatttgtattagaacggtgttataaaacctagcaagtttatgatattttgatagtacttttgaatacaaatctacacatataattatctttttttttaaaaaaagacattttgagaaattattgatgaccaactttcaaaattgtccgaaatgtcaaatatttaagagatgaatatttttgtacttcatggaggaaacatggcataaaaagcacaaatttaggaatatatctaagaacacaattagactctttttttttaaaaaagaagaagatagtatgtaagctggattattaaagtatttaaaccaaactagtgaatccttcgtatattaatatatcttccatgttacatatgctctctgtgattcctgaactcattgcaaagaaaggcgaccaatgatatttttgataaaatttcaacaatttcggtctcttgtaacttacatgatagtgacaacttagtagcttttgttctcctcctccagcaacaaaagcagatcatagcgctagcaagtagagctgccactatcggtagtacaattgcaagaatcttaccagttttactctttttccctgaaaacaaacacaatatttcaaataatggaatttctagcaaaataatactattagtttgaactaaaaaagaattcaaaataacggtcctaactaatacacaaagtttgaattgaactaatacaaatgtttaagacatgtgtattgtgtttatctctaaaatagaaaacaactaaactatgctcttctagtatattagcgtgcaattatttttcgcgttcgcgaataaaatagaaaacaaagaatttccaaagccataataaagtaggagtagcaaaggcaagaacgcaccgggagttcccggcaccgccggcggccggctcaccggcacctgcaccatgccgcggccggtgtagaacgggtaaatctcgtaccgcgcggcgcaccgcacgccgacgagcctggcgccctgcgcgttcgggttgaagtaggcgtgcatctgggcgatggtgtccgccaggcacgcccggcagcgccccggcgccatgtccggcgtgcaccacgccatgctgtagatgaccgggtaggtcgggtcgaagctgatctcgccggtgccgaacctcctcgccgcggcggcggtgtagtccgccgtggcgttgaggacctcgtagatggccccgttgaactcgccgacgtcggagacggtgacgttctcggtgttccggagcttcctctccatgtccgccgggttggtggcggcgccgaggaagtcccggccggagaaggtgaggacgcagccgtcgtagatgatgtgtgcgcccctgttgttcgggcacaggctccgcgcgtccgcgaaggcgctggcgacgcaggcgcggcagccggaggcgttctggttgtcgatcggcgggcagaacgcgagggcgtagaccgtgtcgggcgcgccgccgacggtggcgttggcgaggaggtccggcgaggtggaggcgttgccgggcagggcggcggccaggacgccgaggtttcgctggaacgcgctgttcgccgtgtagttgctgctcccgttgcaggcctgccatgggtacgaggcggcgaggggcgcgagggtcagcacggcggcggcgatggcgaggacatggacggcgcgcagcatgttgccactacagctcaacattgtgcgtcgagctaacacgcgagtggctacctattctagtaggagtacatcggagggagtgacaaggtgagagcaaagcatgtttggatcctcagctcttgcctggctaggctacgtgtttggaaaaaaaaaactgctagaggaaagctagcctttttatttaacgactcacaccagaaagtgcgaagctcatattgatagagcaggaaaaattataatattacaaccttgggagatcgtaagcaggaaaaaaacaaagattttccacctcccacgcaagaacagcaccaaacacaaacccaggataaaactagcaccgaaccggccgtcgctagaccaccaaaggaactacagtcgaggtcacacaaacctatccctaacaactgacactaaaccccaactctagccacatatttgggattgagagagagaggggggtgagagagatgaaaccgatctccc
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| CDS seq | atgttgagctgtagtggcaacatgctgcgcgccgtccatgtcctcgccatcgccgccgccgtgctgaccctcgcgcccctcgccgcctcgtacccatggcaggcctgcaacgggagcagcaactacacggcgaacagcgcgttccagcgaaacctcggcgtcctggccgccgccctgcccggcaacgcctccacctcgccggacctcctcgccaacgccaccgtcggcggcgcgcccgacacggtctacgccctcgcgttctgcccgccgatcgacaaccagaacgcctccggctgccgcgcctgcgtcgccagcgccttcgcggacgcgcggagcctgtgcccgaacaacaggggcgcacacatcatctacgacggctgcgtcctcaccttctccggccgggacttcctcggcgccgccaccaacccggcggacatggagaggaagctccggaacaccgagaacgtcaccgtctccgacgtcggcgagttcaacggggccatctacgaggtcctcaacgccacggcggactacaccgccgccgcggcgaggaggttcggcaccggcgagatcagcttcgacccgacctacccggtcatctacagcatggcgtggtgcacgccggacatggcgccggggcgctgccgggcgtgcctggcggacaccatcgcccagatgcacgcctacttcaacccgaacgcgcagggcgccaggctcgtcggcgtgcggtgcgccgcgcggtacgagatttacccgttctacaccggccgcggcatggtgcaggtgccggtgagccggccgccggcggtgccgggaactcccgggaaaaagagtaaaactggtaagattcttgcaattgtactaccgatagtggcagctctacttgctagcgctatgatctgcttttgttgctggaggaggagaacaaaagctactaagttgtcactatcatataactttgctgaaaacaacaaactaggtgaaggaggatttggtgcagtttacaagggatcctttcccggtggccaaaccatagctgtgaaaaggctctctcagagttctggacaaggcataggagagcttaaaaatgaactggttttaattgccaagctccagcacaagaatctcgtgaggctcgttggagtttgtttggaacaagaagagaagctacttgtctatgaatacatgcctaacaaaagtctagacacatttctttttgaccctgagaaacgcaaacaaatcgattgggcaaagaggttcatgataataaaaggaatcactggaggattgcaatatctgcatgaagattctcaattgaagataattcaccgtgatctaaaagcaagcaacgttctactggacgcaaatatgaaccctaagatttcagactttggcttggcaaggctttttggagatgatcagtcacaagaaacaactaaccgcgttgttggaacttatggatacatggcaccagaatacgctttacgtgggcaatattcaataaagtctgacgtatacagcttcggtgtgttgcttttggagatcatcacaggaagaaaaaacagtgactcctacaactctgaacaagctgttgatcttctgagcctcgtatgggaacattgggcaatgaaaactatcacggagatggttgacccatatttgaggagtgattcttcctctctagatgagattttgaggtgcattcatgttggacttgtatgtgtccaagaggaccctatggataggccaactctgtcaatgatcaatatcatgcttgacggcaatacagtttcagctaaagctccatcgagacctgcatttttcacagaaatgttgggcaatattaatattggttcaagcatgtattcccaaccataccctgtaaccgactccacggccaagcactcgatggccatgtcactaaatgatgtgacagtaacagagcctgaaccaagataa
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| Protein seq | MLSCSGNMLRAVHVLAIAAAVLTLAPLAASYPWQACNGSSNYTANSAFQRNLGVLAAALPGNASTSPDLLANATVGGAPDTVYALAFCPPIDNQNASGCRACVASAFADARSLCPNNRGAHIIYDGCVLTFSGRDFLGAATNPADMERKLRNTENVTVSDVGEFNGAIYEVLNATADYTAAAARRFGTGEISFDPTYPVIYSMAWCTPDMAPGRCRACLADTIAQMHAYFNPNAQGARLVGVRCAARYEIYPFYTGRGMVQVPVSRPPAVPGTPGKKSKTGKILAIVLPIVAALLASAMICFCCWRRRTKATKLSLSYNFAENNKLGEGGFGAVYKGSFPGGQTIAVKRLSQSSGQGIGELKNELVLIAKLQHKNLVRLVGVCLEQEEKLLVYEYMPNKSLDTFLFDPEKRKQIDWAKRFMIIKGITGGLQYLHEDSQLKIIHRDLKASNVLLDANMNPKISDFGLARLFGDDQSQETTNRVVGTYGYMAPEYALRGQYSIKSDVYSFGVLLLEIITGRKNSDSYNSEQAVDLLSLVWEHWAMKTITEMVDPYLRSDSSSLDEILRCIHVGLVCVQEDPMDRPTLSMINIMLDGNTVSAKAPSRPAFFTEMLGNINIGSSMYSQPYPVTDSTAKHSMAMSLNDVTVTEPEPR |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0023940 | OsLima_07g0023940.01 | Chr07 | 27066134 | 27069946 | - | NAM | ||
| CDS seq | atgttgagctgtagtggcaacatgctgcgcgccgtccatgtcctcgccatcgccgccgccgtgctgaccctcgcgcccctcgccgcctcgtacccatggcaggcctgcaacgggagcagcaactacacggcgaacagcgcgttccagcgaaacctcggcgtcctggccgccgccctgcccggcaacgcctccacctcgccggacctcctcgccaacgccaccgtcggcggcgcgcccgacacggtctacgccctcgcgttctgcccgccgatcgacaaccagaacgcctccggctgccgcgcctgcgtcgccagcgccttcgcggacgcgcggagcctgtgcccgaacaacaggggcgcacacatcatctacgacggctgcgtcctcaccttctccggccgggacttcctcggcgccgccaccaacccggcggacatggagaggaagctccggaacaccgagaacgtcaccgtctccgacgtcggcgagttcaacggggccatctacgaggtcctcaacgccacggcggactacaccgccgccgcggcgaggaggttcggcaccggcgagatcagcttcgacccgacctacccggtcatctacagcatggcgtggtgcacgccggacatggcgccggggcgctgccgggcgtgcctggcggacaccatcgcccagatgcacgcctacttcaacccgaacgcgcagggcgccaggctcgtcggcgtgcggtgcgccgcgcggtacgagatttacccgttctacaccggccgcggcatggtgcaggtgccggtgagccggccgccggcggtgccgggaactcccgggaaaaagagtaaaactggtaagattcttgcaattgtactaccgatagtggcagctctacttgctagcgctatgatctgcttttgttgctggaggaggagaacaaaagctactaagttgtcactatcatataactttgctgaaaacaacaaactaggtgaaggaggatttggtgcagtttacaagggatcctttcccggtggccaaaccatagctgtgaaaaggctctctcagagttctggacaaggcataggagagcttaaaaatgaactggttttaattgccaagctccagcacaagaatctcgtgaggctcgttggagtttgtttggaacaagaagagaagctacttgtctatgaatacatgcctaacaaaagtctagacacatttctttttgaccctgagaaacgcaaacaaatcgattgggcaaagaggttcatgataataaaaggaatcactggaggattgcaatatctgcatgaagattctcaattgaagataattcaccgtgatctaaaagcaagcaacgttctactggacgcaaatatgaaccctaagatttcagactttggcttggcaaggctttttggagatgatcagtcacaagaaacaactaaccgcgttgttggaacttatggatacatggcaccagaatacgctttacgtgggcaatattcaataaagtctgacgtatacagcttcggtgtgttgcttttggagatcatcacaggaagaaaaaacagtgactcctacaactctgaacaagctgttgatcttctgagcctcgtatgggaacattgggcaatgaaaactatcacggagatggttgacccatatttgaggagtgattcttcctctctagatgagattttgaggtgcattcatgttggacttgtatgtgtccaagaggaccctatggataggccaactctgtcaatgatcaatatcatgcttgacggcaatacagtttcagctaaagctccatcgagacctgcatttttcacagaaatgttgggcaatattaatattggttcaagcatgtattcccaaccataccctgtaaccgactccacggccaagcactcgatggccatgtcactaaatgatgtgacagtaacagagcctgaaccaagataa
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| Protein seq | MLSCSGNMLRAVHVLAIAAAVLTLAPLAASYPWQACNGSSNYTANSAFQRNLGVLAAALPGNASTSPDLLANATVGGAPDTVYALAFCPPIDNQNASGCRACVASAFADARSLCPNNRGAHIIYDGCVLTFSGRDFLGAATNPADMERKLRNTENVTVSDVGEFNGAIYEVLNATADYTAAAARRFGTGEISFDPTYPVIYSMAWCTPDMAPGRCRACLADTIAQMHAYFNPNAQGARLVGVRCAARYEIYPFYTGRGMVQVPVSRPPAVPGTPGKKSKTGKILAIVLPIVAALLASAMICFCCWRRRTKATKLSLSYNFAENNKLGEGGFGAVYKGSFPGGQTIAVKRLSQSSGQGIGELKNELVLIAKLQHKNLVRLVGVCLEQEEKLLVYEYMPNKSLDTFLFDPEKRKQIDWAKRFMIIKGITGGLQYLHEDSQLKIIHRDLKASNVLLDANMNPKISDFGLARLFGDDQSQETTNRVVGTYGYMAPEYALRGQYSIKSDVYSFGVLLLEIITGRKNSDSYNSEQAVDLLSLVWEHWAMKTITEMVDPYLRSDSSSLDEILRCIHVGLVCVQEDPMDRPTLSMINIMLDGNTVSAKAPSRPAFFTEMLGNINIGSSMYSQPYPVTDSTAKHSMAMSLNDVTVTEPEPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0023940 | OsLima_07g0023940.02 | Chr07 | 27066098 | 27070017 | - | IsoSeq | ||
| CDS seq | atggcaggcctgcaacgggagcagcaactacacggcgaacagcgcgttccagcgaaacctcggcgtcctggccgccgccctgcccggcaacgcctccacctcgccggacctcctcgccaacgccaccgtcggcggcgcgcccgacacggtctacgccctcgcgttctgcccgccgatcgacaaccagaacgcctccggctgccgcgcctgcgtcgccagcgccttcgcggacgcgcggagcctgtgcccgaacaacaggggcgcacacatcatctacgacggctgcgtcctcaccttctccggccgggacttcctcggcgccgccaccaacccggcggacatggagaggaagctccggaacaccgagaacgtcaccgtctccgacgtcggcgagttcaacggggccatctacgaggtcctcaacgccacggcggactacaccgccgccgcggcgaggaggttcggcaccggcgagatcagcttcgacccgacctacccggtcatctacagcatggcgtggtgcacgccggacatggcgccggggcgctgccgggcgtgcctggcggacaccatcgcccagatgcacgcctacttcaacccgaacgcgcagggcgccaggctcgtcggcgtgcggtgcgccgcgcggtacgagatttacccgttctacaccggccgcggcatggtgcaggtgccggtgagccggccgccggcggtgccgggaactcccgggaaaaa
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| Protein seq | MAGLQREQQLHGEQRVPAKPRRPGRRPARQRLHLAGPPRQRHRRRRARHGLRPRVLPADRQPERLRLPRLRRQRLRGRAEPVPEQQGRTHHLRRLRPHLLRPGLPRRRHQPGGHGEEAPEHRERHRLRRRRVQRGHLRGPQRHGGLHRRRGEEVRHRRDQLRPDLPGHLQHGVVHAGHGAGALPGVPGGHHRPDARLLQPERAGRQARRRAVRRAVRDLPVLHRPRHGAGAGEPAAGGAGNSREK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 27067671 | 27068313 | - | OsLima_07g0023940.02 | OsLima_07g0023940.02,OsLima_07g0023940.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.355550 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0628700 | RBH | 38.914490 | 40.454979 | 1.680906 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43560 | RBH | 24.122494 | 24.972198 | 0.392225 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0628700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024200 | RBH | 14.261264 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024250 | RBH | 5.327213 | 0.0 | 4.032944 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024120 | RBH | 54.501690 | 0.0 | 6.980472 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024040 | RBH | 9.040638 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024170 | RBH | 123.358002 | 1.255692 | 8.192560 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0427800 | RBH | 81.867649 | 0.7753 | 0.002461 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024690 | RBH | 11.687279 | 0.0 | 1.472873 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0438800 | RBH | 88.393227 | 0.1636705 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018530 | RBH | 0.665661 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024090 | RBH | 13.253127 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024010 | RBH | 143.688599 | 2.591978 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024200 | RBH | 22.754297 | 0.000000 | 7.114478 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023950 | SBH | 11.553581 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023890 | SBH | 6.189334 | 0.0 | 0.899826 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023910 | RBH | 25.614790 | 6.623271 | 0.536154 |
