Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0022860 | OGI:07070240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:26308270-26312609 | ||||||||
| Gene Symbol | OsPAA2, PAA2 | ||||||||||
| DNA seq | tcagatggtcacttctggattgcccttccccaggtctctcaccctttctgccatcagcttccatggagagaaagaaaaatgaataaaccaaacaaaacaaccatgaaaaaaattcagtgctcaaactgcaggtaaggtctccatggctggacctgatctcccgctggaccttgacgaggagggtcatcgcgtcgttcccggcgctcgtcgagaggaccaaggcgacgctgaagggagcagtggtggctcaggtgtcgttgaacggcgagatcgtgagggttcttggtgattctgaagggaaggtgatcaacatggtcacttcggtgacagagttcaacggagatctcttcctcggcagccttgcgaccaacttcatagggaaattatccctggctaaggttacacgggagcaggaggatgcagttccttcgtagacagttacagtttgaagtgttgatgtgtgatcatcagttggtatcgtaaatccgggggcaactcataattgacacttgacacagcttgggcgcagtcatacatatagctatagcgtacagtaatcagttagcggtaatggttttgcataacttccatgctgtaaaagatttgaaagactggtgatcgtcctatatcgagcactttgttctgctctcgtccttcacctccgcgtgcgcttgaatttcactgggtgcagagttacagttggatcccctttcttgataaatccaagctgacaagaaagtttgacttgcgtcgttcagtataatggcagtgcaaatatttcttgacgttttatttagagaagttttacattctttaagaattccaaaatttttagtacattttttttaccttacactgggatgtactaaattttacactagaaaatatggtacctttcggtatctcctcaagaaccgtaaaatcactcttatttaacaatagtgagtgcaaacagaacatatctacaatagagctaagaatgagcactacctcaaattctcgggcatagaaatccccctccaggacatgtttcaacgcagattttgccaactggaaacaaaatcagtaaaaattaatcacaaaggggatcaaaatattggatcaccgtattggatagggcttgtgactacaaaagtgctaatgtacaaataaatacgcaacagcatgagggaaaaaagaacttgcaggcatgcattattgacagtagtctgtcgaagatgctgcacagatagacatcccaaaacgcactctgttgttaaagaaacagctaaaacttcatgtggtaagcatccaaagagaactaacagagtggtgcccttaataatgatgttctcaaattcagcttcagagaaaagggaacttttgttgtgttaaatactagttactagtatttaagcatgtatgagatttggatatcttgtactgtctgcaatgtgtggcttggtgttgaaccatcacatttcatatgaacatgttactgtaactaaaaaattcaataacattttttccattacagatcaatgcttacctagtttactcactaatctgaatgccattttatacatttctagtcagcattggataagttcaatttcatggtttgctaagaatagtaacatacaccccttttgttgtgccagatgatagagaaggtttgctcttcattctttcctcaagaaagttcataacttccttctctttcggaccagcacttgcggcctgcaatgacataggagattcatgtttctcagatacagaaaatgcttgagcttatggggtggtttctccatctagattgttcagtggctctgtgacctaatcagtttctagttgcacatgataactgaaaaaaaatacagcatgctatttgcatttgttgtagtcattcacaaaaaaacacgactaacttgtgttatgatgaaaagagctatttaatgaaccgcaaaaaattcctagaataccttgtgtgcaaagaattgtccagctggatcacatgtgaagagctcgggggttcctttctcttcatcaattccaaagatcatagaaactgcagaggaaaatgtgtaggatcaaagtaatcattgtaatcctttgatggtagacgatgatggcaggtttcaccactcacaaaacacaaattggatagcactaaccaactccataaggtcttatctgagcatgctgggtgcggatctgtgctctgtctgcaatcctacaaacaagcaatgatacaccactagtaaaatgcagaacagttcagtgaaattagtaaacaatgttaggctattgaagattgaacagagtaatgtatccacgtagcttaacaaaataagggtaggtttgatagtaaagcacgagcatatgcttatcagaattcagaaaagttcccagcccgttgatctcatatgaattctcaccatattttctcatatatccaatattaagtcttaatgtgagtgggcgaaattgatcctttgacattctaatgggagtggcaaatgatcaatccctacaagcagagagcggcctagagataattatataaccattatataaaatagcatgatgatcaaatcattttagatgtttgtaagacataggtattgtacaatgagccatctatttcatttagaccaaagcttaccattgagctaacatacaaggagacattttatatccccacttgaagcgaaactcggcagctgcgttccttgcctcctgagctattgcccttccatcacctggaataaagatatagcccgtcaaaactcaaaagatcagaacaagcagacaagtaaaatgatactgcgatggtatgtcctgccattggcctctagagtgtttcttatgatgatgtgagccattctagctgttccataaaattctaaacagaactatattaagatatttagagctcagtgacaaatcacatgctatggaattgagaagtccctaactccctctaaactgaaggaactgtccaccaacagaatgatataacaagttatcaggcattagtaacaaaacagtacattatatcatacaagaaagtagtcaaatagaacgattgattacttagcaagcaaaagttgcctagttacattactgtctcacataggttaaatcaaacaagacaatagctcagtacagtagttacagtactggctcacattgtcacattagccatttacaacctcagaaacacaaaatagatgagagtatggtagtaaaggggcgatcgactgccaaataagtcagtatattgtgcaaccaaggccaagattccattctatctagtgcatactcctaggatgtaggatccaatcacaccacagtggttcactcattcactgaacatttcatctaatcagcatgtatgacgtatcctggaagtgcatactactcctatactaaaactgattcaatatagggagtcagcaaaattagcatccagtcgaacaagcgcatcatcggtatgtaaaacatccttatcacatcgcaatgctctcatgaacaccaagagttgcagagattaattattggaaccggtttcgctgagacgttctacggcaggataaagtcgagtgatcctccaattcgcaattcgtaactcgtaaatgatattgtgccagcgggatccaaacgcgcgcaccgcatgttccacgcagcacttagaactgagaatctgagagagcaaagttgtggctcacctggcatcccggtggcgagcagcccaatccggtcggtgatcgcgaacaggttcgtgatggtcgtcgggtcgtgcaacttgtcctgatcaggggaacgaagcaaatcaaacggccgcagaatgaatcacaaatgaggggacaaggggattccgctctcgcgacgtgctcacctccttccgatgggtgaggacgtagacggagtcgtcgccgcgcacgccgacggaggtgatcccggccagcttcacggcgttgaacgcgtagtctgcgagagcacacagcacggccgcacggggaggcgggcggcggaattgaagcagcagatcgttagccaaagcgcagacaccagcagcgaatttggtcggcgtggagggggcatgtcgcggcggcgggcactcaccgagttggcagaggcggccctccggggagaagaggatgatgaagcgctcgtagtcggcggggccggcggcgcggctgccgcctccggtgaccaccgccgcggcctcggcttccggcatctcgctagcaaattcaccctctctctctctccgccgcgtgaggcgtgggaatggtggcgtggtggtgtgtcttggtctcggggaggaggaaacggcccgcggcttcttccgctgc
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| CDS seq | atgccggaagccgaggccgcggcggtggtcaccggaggcggcagccgcgccgccggccccgccgactacgagcgcttcatcatcctcttctccccggagggccgcctctgccaactcgactacgcgttcaacgccgtgaagctggccgggatcacctccgtcggcgtgcgcggcgacgactccgtctacgtcctcacccatcggaaggaggacaagttgcacgacccgacgaccatcacgaacctgttcgcgatcaccgaccggattgggctgctcgccaccgggatgccaggtgatggaagggcaatagctcaggaggcaaggaacgcagctgccgagtttcgcttcaagtggggatataaaatgtctccttgtatgttagctcaatggattgcagacagagcacagatccgcacccagcatgctcagataagaccttatggagttgtttctatgatctttggaattgatgaagagaaaggaacccccgagctcttcacatgtgatccagctggacaattctttgcacacaaggccgcaagtgctggtccgaaagagaaggaagttatgaactttcttgaggaaagaatgaagagcaaaccttctctatcatctggcacaacaaaagggctgatggcagaaagggtgagagacctggggaagggcaatccagaagtgaccatctga
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| Protein seq | MPEAEAAAVVTGGGSRAAGPADYERFIILFSPEGRLCQLDYAFNAVKLAGITSVGVRGDDSVYVLTHRKEDKLHDPTTITNLFAITDRIGLLATGMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRTQHAQIRPYGVVSMIFGIDEEKGTPELFTCDPAGQFFAHKAASAGPKEKEVMNFLEERMKSKPSLSSGTTKGLMAERVRDLGKGNPEVTI |
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| Function | Proteasome subunit alpha type-6 [UniProtKB/Swiss-Prot:Q9XG77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0022860 | OsLima_07g0022860.01 | Chr07 | 26308270 | 26312609 | - | NAM | ||
| CDS seq | atgccggaagccgaggccgcggcggtggtcaccggaggcggcagccgcgccgccggccccgccgactacgagcgcttcatcatcctcttctccccggagggccgcctctgccaactcgactacgcgttcaacgccgtgaagctggccgggatcacctccgtcggcgtgcgcggcgacgactccgtctacgtcctcacccatcggaaggaggacaagttgcacgacccgacgaccatcacgaacctgttcgcgatcaccgaccggattgggctgctcgccaccgggatgccaggtgatggaagggcaatagctcaggaggcaaggaacgcagctgccgagtttcgcttcaagtggggatataaaatgtctccttgtatgttagctcaatggattgcagacagagcacagatccgcacccagcatgctcagataagaccttatggagttgtttctatgatctttggaattgatgaagagaaaggaacccccgagctcttcacatgtgatccagctggacaattctttgcacacaaggccgcaagtgctggtccgaaagagaaggaagttatgaactttcttgaggaaagaatgaagagcaaaccttctctatcatctggcacaacaaaagggctgatggcagaaagggtgagagacctggggaagggcaatccagaagtgaccatctga
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| Protein seq | MPEAEAAAVVTGGGSRAAGPADYERFIILFSPEGRLCQLDYAFNAVKLAGITSVGVRGDDSVYVLTHRKEDKLHDPTTITNLFAITDRIGLLATGMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRTQHAQIRPYGVVSMIFGIDEEKGTPELFTCDPAGQFFAHKAASAGPKEKEVMNFLEERMKSKPSLSSGTTKGLMAERVRDLGKGNPEVTI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0614100 | RBH | 3.665554 | 3.232700 | 4.881260 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42260 | RBH | 2.399790 | 2.107527 | 1.368639 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0614100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023160 | RBH | 0.189786 | 3.333476 | 1.800021 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023210 | RBH | 0.271380 | 1.207531 | 0.791799 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023050 | RBH | 0.418218 | 0.000000 | 5.036417 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023010 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023080 | RBH | 2.450799 | 2.061533 | 7.197925 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0414600 | RBH | 0.7625955 | 3.4368975 | 8.7283175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023550 | RBH | 0.055687 | 0.000000 | 0.423410 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0424800 | RBH | 1.9416185 | 2.5141925 | 5.0917055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005880 | RBH | 1.412465 | 1.652851 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023000 | RBH | 0.449593 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022900 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023090 | RBH | 0.000000 | 0.0 | 0.573138 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022870 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022810 | RBH | 0.707086 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022840 | RBH | 0.0 | 0.0 | 4.403665 |
