Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0021770 | OGI:07068080 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:25514274-25515818 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaacctctgttagaagtccattcatcgctcttctcctcctatcccttgtggccatcctctcaccataagtcagaaagatgtccccaagatcaacatgccccacatccttcaacctccttccaacttcctcaaacatcgacaccccatcctcatttgaaaagtagtacaagaacttgttatagtcgaaccttggcacatccactccaccccacatagtcctctccacaaacttagttgcctccaatgtcctcccggccttcaccaacccaccaacaaagatgctctcaaagttcaccaatggatccctccccttccttcccctcttccccaagtgcccctgaagcagcataatgtatgtgtgcatgttcggctcgcaccccgtggcaaccatctctctgaaaacctccgtcgcttctcgagctcgcttgatcctgatcaatcccttcatcaacccatggtacagtgcaatgtccttctccttaacaccatgaaaaaccctgtatccttccctcaccctcctcctcaccagcagcccatacaccaaatcccccatcacctctccgtccacctccacacctctcttgaacatttcggcgaacaccatgtacgcgccccacatcctcccttccttgcacagccacgacaccactgcccggtagcacccgcctctgccaccgtctgaaactcccctcctccgcattccgtcgaacaccttcatggcgtccgcgacgcggttattcttgaacagcgtcaccacgatctcctcgtacgcggcggcgcccgggtcgagcccgcgcctctccatcccgttccacaccctgcacgcgtcagagagcatccccgcgcggcagtatccgacgaccagaagctcgcagcacctcccggtctgcgacacgccgtaccggtgctcggcctgcttgatcaccttctcggcgacgtcgggcagcttgcagacggagcaaacgacgtcggtgatgaagttgagcgtgcggggcctgtcggcgtccgggaagagggcgagcagggaggagaccttgccgacctcgcgggccggggcgaggccacggatggcggcgcggagggcggcaagggagcggagcgcaggcgggaaggagagcagggtggagtggagcaggtcgacgttgcgggacttggcgaggacgtcgaggaagcgcgcggcggtggccggggagtgcgcgaagccgtgggcggcggtgaggtggtcgaggaggcggcgcacggggcgccaggagagcgggaaccgcgcggaggcctggaggaagagctcgcggaggtcgtcggccgcggcggaggggagcggcagcgcggagaggcgccgccgcagcgcgtcctccggggcgtgctggtgctggtagagcaccgtgcagaggcggagcagcagcgacgggtcggtggggcgccccggcgcgggggcgggggcgggagcggcggcagcttccgcggcggtggagaggaggaggcggcggcggcggcgggagagtgggaggaggaggaggaagcgggacagcggcggcaacggcat
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| CDS seq | atgccgttgccgccgctgtcccgcttcctcctcctcctcccactctcccgccgccgccgccgcctcctcctctccaccgccgcggaagctgccgccgctcccgcccccgcccccgcgccggggcgccccaccgacccgtcgctgctgctccgcctctgcacggtgctctaccagcaccagcacgccccggaggacgcgctgcggcggcgcctctccgcgctgccgctcccctccgccgcggccgacgacctccgcgagctcttcctccaggcctccgcgcggttcccgctctcctggcgccccgtgcgccgcctcctcgaccacctcaccgccgcccacggcttcgcgcactccccggccaccgccgcgcgcttcctcgacgtcctcgccaagtcccgcaacgtcgacctgctccactccaccctgctctccttcccgcctgcgctccgctcccttgccgccctccgcgccgccatccgtggcctcgccccggcccgcgaggtcggcaaggtctcctccctgctcgccctcttcccggacgccgacaggccccgcacgctcaacttcatcaccgacgtcgtttgctccgtctgcaagctgcccgacgtcgccgagaaggtgatcaagcaggccgagcaccggtacggcgtgtcgcagaccgggaggtgctgcgagcttctggtcgtcggatactgccgcgcggggatgctctctgacgcgtgcagggtgtggaacgggatggagaggcgcgggctcgacccgggcgccgccgcgtacgaggagatcgtggtgacgctgttcaagaataaccgcgtcgcggacgccatgaaggtgttcgacggaatgcggaggaggggagtttcagacggtggcagaggcgggtgctaccgggcagtggtgtcgtggctgtgcaaggaagggaggatgtggggcgcgtacatggtgttcgccgaaatgttcaagagaggtgtggaggtggacggagaggtgatgggggatttggtgtatgggctgctggtgaggaggagggtgagggaaggatacagggtttttcatggtgttaaggagaaggacattgcactgtaccatgggttgatgaagggattgatcaggatcaagcgagctcgagaagcgacggaggttttcagagagatggttgccacggggtgcgagccgaacatgcacacatacattatgctgcttcaggggcacttggggaagaggggaaggaaggggagggatccattggtgaactttgagagcatctttgttggtgggttggtgaaggccgggaggacattggaggcaactaagtttgtggagaggactatgtggggtggagtggatgtgccaaggttcgactataacaagttcttgtactacttttcaaatgaggatggggtgtcgatgtttgaggaagttggaaggaggttgaaggatgtggggcatgttgatcttggggacatctttctgacttatggtgagaggatggccacaagggataggaggagaagagcgatgaatggacttctaacagaggtttaa
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| Protein seq | MPLPPLSRFLLLLPLSRRRRRLLLSTAAEAAAAPAPAPAPGRPTDPSLLLRLCTVLYQHQHAPEDALRRRLSALPLPSAAADDLRELFLQASARFPLSWRPVRRLLDHLTAAHGFAHSPATAARFLDVLAKSRNVDLLHSTLLSFPPALRSLAALRAAIRGLAPAREVGKVSSLLALFPDADRPRTLNFITDVVCSVCKLPDVAEKVIKQAEHRYGVSQTGRCCELLVVGYCRAGMLSDACRVWNGMERRGLDPGAAAYEEIVVTLFKNNRVADAMKVFDGMRRRGVSDGGRGGCYRAVVSWLCKEGRMWGAYMVFAEMFKRGVEVDGEVMGDLVYGLLVRRRVREGYRVFHGVKEKDIALYHGLMKGLIRIKRAREATEVFREMVATGCEPNMHTYIMLLQGHLGKRGRKGRDPLVNFESIFVGGLVKAGRTLEATKFVERTMWGGVDVPRFDYNKFLYYFSNEDGVSMFEEVGRRLKDVGHVDLGDIFLTYGERMATRDRRRRAMNGLLTEV |
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| Function | Putative pentatricopeptide repeat-containing protein At1g26500 [UniProtKB/Swiss-Prot:Q9FZD4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0021770 | OsLima_07g0021770.01 | Chr07 | 25514274 | 25515818 | - | NAM | ||
| CDS seq | atgccgttgccgccgctgtcccgcttcctcctcctcctcccactctcccgccgccgccgccgcctcctcctctccaccgccgcggaagctgccgccgctcccgcccccgcccccgcgccggggcgccccaccgacccgtcgctgctgctccgcctctgcacggtgctctaccagcaccagcacgccccggaggacgcgctgcggcggcgcctctccgcgctgccgctcccctccgccgcggccgacgacctccgcgagctcttcctccaggcctccgcgcggttcccgctctcctggcgccccgtgcgccgcctcctcgaccacctcaccgccgcccacggcttcgcgcactccccggccaccgccgcgcgcttcctcgacgtcctcgccaagtcccgcaacgtcgacctgctccactccaccctgctctccttcccgcctgcgctccgctcccttgccgccctccgcgccgccatccgtggcctcgccccggcccgcgaggtcggcaaggtctcctccctgctcgccctcttcccggacgccgacaggccccgcacgctcaacttcatcaccgacgtcgtttgctccgtctgcaagctgcccgacgtcgccgagaaggtgatcaagcaggccgagcaccggtacggcgtgtcgcagaccgggaggtgctgcgagcttctggtcgtcggatactgccgcgcggggatgctctctgacgcgtgcagggtgtggaacgggatggagaggcgcgggctcgacccgggcgccgccgcgtacgaggagatcgtggtgacgctgttcaagaataaccgcgtcgcggacgccatgaaggtgttcgacggaatgcggaggaggggagtttcagacggtggcagaggcgggtgctaccgggcagtggtgtcgtggctgtgcaaggaagggaggatgtggggcgcgtacatggtgttcgccgaaatgttcaagagaggtgtggaggtggacggagaggtgatgggggatttggtgtatgggctgctggtgaggaggagggtgagggaaggatacagggtttttcatggtgttaaggagaaggacattgcactgtaccatgggttgatgaagggattgatcaggatcaagcgagctcgagaagcgacggaggttttcagagagatggttgccacggggtgcgagccgaacatgcacacatacattatgctgcttcaggggcacttggggaagaggggaaggaaggggagggatccattggtgaactttgagagcatctttgttggtgggttggtgaaggccgggaggacattggaggcaactaagtttgtggagaggactatgtggggtggagtggatgtgccaaggttcgactataacaagttcttgtactacttttcaaatgaggatggggtgtcgatgtttgaggaagttggaaggaggttgaaggatgtggggcatgttgatcttggggacatctttctgacttatggtgagaggatggccacaagggataggaggagaagagcgatgaatggacttctaacagaggtttaa
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| Protein seq | MPLPPLSRFLLLLPLSRRRRRLLLSTAAEAAAAPAPAPAPGRPTDPSLLLRLCTVLYQHQHAPEDALRRRLSALPLPSAAADDLRELFLQASARFPLSWRPVRRLLDHLTAAHGFAHSPATAARFLDVLAKSRNVDLLHSTLLSFPPALRSLAALRAAIRGLAPAREVGKVSSLLALFPDADRPRTLNFITDVVCSVCKLPDVAEKVIKQAEHRYGVSQTGRCCELLVVGYCRAGMLSDACRVWNGMERRGLDPGAAAYEEIVVTLFKNNRVADAMKVFDGMRRRGVSDGGRGGCYRAVVSWLCKEGRMWGAYMVFAEMFKRGVEVDGEVMGDLVYGLLVRRRVREGYRVFHGVKEKDIALYHGLMKGLIRIKRAREATEVFREMVATGCEPNMHTYIMLLQGHLGKRGRKGRDPLVNFESIFVGGLVKAGRTLEATKFVERTMWGGVDVPRFDYNKFLYYFSNEDGVSMFEEVGRRLKDVGHVDLGDIFLTYGERMATRDRRRRAMNGLLTEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0599201 | RBH | 0.465036 | 0.158969 | 0.075271 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g40820 | RBH | 0.320588 | 0.108996 | 0.009876 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0599201 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022160 | RBH | 0.043733 | 0.0 | 0.942208 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0022190 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022060 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0021960 | RBH | 0.076825 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022050 | RBH | 0.459935 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0400600 | SBH | 0.454066 | 1.1127185 | 0.231619 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0413900 | RBH | 0.4758325 | 1.4171975 | 1.896123 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021750 | RBH | 0.600714 | 0.166413 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021940 | RBH | 0.0 | 1.948890 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0021850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021720 | RBH | 0.050838 | 0.574891 | 0.230119 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021790 | RBH | 0.0 | 1.020332 | 0.0 |
