Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0019670 | OGI:07063980 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:23817847-23821759 | ||||||||
| Gene Symbol | CDPK20, OsCDPK20, OsCPK20 | ||||||||||
| DNA seq | agccaacagattttggaccatccattgcgtgtgttgtaagttcagtctctgactttcagtttcagagtataaaccaagcattcttaggaaaaaggagtaataaaacagaacaaggttaggaatgcacaaaaaccacctacttccttttcctttctcttgtacagtacatttcgccaaatgtttggccacccgtggggcatggatcaatataatctaaatacaaacaaacaaacaaaccttccaacaatcacctaatgcttcatacggggcaccaaaatgaaaaatagagcagtggaaatctcgagaaatgagaacggaagaaaatagtcgtcaacaaagaaccaggaaagctacacaaggttttcatctggggaattcacaacttgcctattccgtcatctatctattgggtagttgttaactgcaatgatccatctttctgaagttttaggctgaggctagtgaaccgttctcttgaatattgtcttgaggctttcctccaatctgttccggccttcatcattgccgcaaactcatcatagcttatcttgccatcctgaaagtacagaacaatgctattaatacttttagagtcatgtgtgctatgaatcattatgtcaaaacattttgtgcacaccaccaaattaattaaactatttgaagaagaagaaaaaactagcagtctatcaatttcttaaaactagtcaatgaagagccacaaaccttatcagtgtctacatcacggatgatggcattgataacctcttcatgatttgctcccaggtcatcagccaatgattcacggagctcatcgatttcaatatatccactctggttccgatcaaagtatgcaaatgccttgtgcagatgctcatcgttgccaatctttctcaggtgaacagatagagcaacaaactccccgtagtctaaagatccatttccatcgacatccgcctggcataaccatggataaatagtaaatatacgaaacccagtagtcattcacaacaatagtttgggaaaaatgcattcgagagcaaataatcttttctagttcaacaagatataaagatagtttcccatttttttcccaaaatttggaggggtgtttggggagagaggaagaagggtggcttagggtaactcacagcatccattagtatttggacatctgcatcagccatttggtgcccaagtttatgcaggccaagcttcagctcatcaaaattaatcatattatctttgttgagatccatcttctcaaacatgtcctttataccagcaacctcttctaccgaaagatgctcagctatgacctgtagtaaaacaaaatgtgagaatccagagcaaacaagactactattgaaaagccatagttaggtttgagggtcaggtcaggctgaggagtataccctaagtgcatgcttcttgaacttgttcatcacagagaattgttgaagtctggccttaacagtttcgcctaaatttacatttggagccttcttaatgttctgtaaccaaggatgatctggaagaaatacaagataaggttgtcagccaaaaacaaccaagttaaatgatataagggataacatcttcagaaaatcattaagctttatcatttctttactcatccttttgcaaggtctgtgatatcttggattagaagttaacaagttatagatctttgtaactcagaaccaccacattttcaagcttgaaaatttttggtattgttaaagaacaaaagaaataccaatggttggaaagtttctgtatcagtcaagaacagaaggaaaaaaatacaatatattaaaccagtgtgcaaattgattattaccaagcacttgttgagcatttagccgccgcctagggtctggattgagcattcccttgacaagatcctttgcattatctgagacccttggccatgggtctctcttgaagtcaatgacagaacggataattgcctgagcaacaccctgttcagtttctgcattataacatggaaacaaaagaaggatcaggaatagcattcaacattacaacattgccaggtctacaacagacacagacaaaagtaaagattgacagtttctaatgtcgcagactgcattagtgcagaaatgtgatcagaagaggtcaacttctatacactaaatacgtagtatttaatttagtttatacatttggttatcagaattgaagaattcatgtacaaaactaacctgcccaaaatggagggactccacaaagaagaatgtaaaggatcactcctgcactccaaacatcaacctcggggccataatttctctttagcacctcaggagccatgtaataaggacttccgacaatctcagtgaaccgttcacctgcacataatcaataatcacttaattagcccatcggaaaaatatatacacgcacgtatacaatgtgaatagacaacttaaggtaagcccttctagaggcactgtgaagtcatcatttgacaactgagaactgactgacaaattaaaacagcacgcttgagatataggaaataaggacattgcgactgttagactgtacctggggtgaaaaaaacagacaggccaaaatcaattgccttcagagctgcagtttccttcttgtttgcaaacaagaaattctctggtttgaggtcccggtgcatcactccatgcttatggcacatctgatgttttacagacagacaaaaatacacgttattcatcacactatggaagaaaaaagaagttgcaacaatctagttaccaattcaaagaggcaggcatggataactaactaaaaccgaaactgatcagagtctaattaatcagacaaatagacaacagaatcatctggcatgtagcaaaagaaaacgattcccacattattggagaaacaaaagcagataaaaacatgaacttttcagttgttgtcatctagtaacaattctaccataaatctccaccagtgaactcgatttcttttcattatactgtgagactacctcatcgataacgacgacaagaaatcaaacaggatcatttcagaaaatacagtagaaagcaacgaaggaatagagaaatcaccgaagctaccaatctcacctgcacgacctcgacgatggtgcgggtgaccagcgcggcggcgcgctcggtgtagtggccccgggcgacgatccggtcgaagagctccccgccctcgcagagctccatgacgaggtggacggcattgtcgtcctcgtaggtgtcccggagcgtgacgatgttggggtgcttggggaggtggcgcatgatgtccacctcccggcgcacgtcctcgatgtccacggcggtgcggagcttcttcttggagatggacttgcacgcgtaggcgtcccccgtctcccgctccgtgcagaggtaggtgaccccgaactcgccgcgcccgagctccccgcccagctcgtaccgcgcggcgatgtcccgccccgtcggctcgcgcagcaccaccagcctgtgccccgacggcgccgacgaccggttgtactcgatcgagaacgggttcggcttcttccccttcttctgctgctgctgctgctgcttcggctccttctgcttctgcttctgctcctgctgctgcttcttcctcccgcggccgctgccctccggcgtcacgcagcagttgcccatctcgcttcagccaagatccgcgcgacgcaagaaccccccgcgaatcaaagatctgcggcgagtgggaggccaagaaatggcggcgtgacgcgttgggggagggaggagaaggaggcgagaggggggaggaggaggaggagggggttaaattgggaggtggggtggattcggtggggagacggggtcagccgtggcggcggctggggggcgtgtgggaatccgccagtggtaaagcc
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| CDS seq | atgggcaactgctgcgtgacgccggagggcagcggccgcgggaggaagaagcagcagcaggagcagaagcagaagcagaaggagccgaagcagcagcagcagcagcagaagaaggggaagaagccgaacccgttctcgatcgagtacaaccggtcgtcggcgccgtcggggcacaggctggtggtgctgcgcgagccgacggggcgggacatcgccgcgcggtacgagctgggcggggagctcgggcgcggcgagttcggggtcacctacctctgcacggagcgggagacgggggacgcctacgcgtgcaagtccatctccaagaagaagctccgcaccgccgtggacatcgaggacgtgcgccgggaggtggacatcatgcgccacctccccaagcaccccaacatcgtcacgctccgggacacctacgaggacgacaatgccgtccacctcgtcatggagctctgcgagggcggggagctcttcgaccggatcgtcgcccggggccactacaccgagcgcgccgccgcgctggtcacccgcaccatcgtcgaggtcgtgcagatgtgccataagcatggagtgatgcaccgggacctcaaaccagagaatttcttgtttgcaaacaagaaggaaactgcagctctgaaggcaattgattttggcctgtctgtttttttcaccccaggtgaacggttcactgagattgtcggaagtccttattacatggctcctgaggtgctaaagagaaattatggccccgaggttgatgtttggagtgcaggagtgatcctttacattcttctttgtggagtccctccattttgggcagaaactgaacagggtgttgctcaggcaattatccgttctgtcattgacttcaagagagacccatggccaagggtctcagataatgcaaaggatcttgtcaagggaatgctcaatccagaccctaggcggcggctaaatgctcaacaagtgcttgatcatccttggttacagaacattaagaaggctccaaatgtaaatttaggcgaaactgttaaggccagacttcaacaattctctgtgatgaacaagttcaagaagcatgcacttagggtcatagctgagcatctttcggtagaagaggttgctggtataaaggacatgtttgagaagatggatctcaacaaagataatatgattaattttgatgagctgaagcttggcctgcataaacttgggcaccaaatggctgatgcagatgcggatgtcgatggaaatggatctttagactacggggagtttgttgctctatctgttcacctgagaaagattggcaacgatgagcatctgcacaaggcatttgcatactttgatcggaaccagagtggatatattgaaatcgatgagctccgtgaatcattggctgatgacctgggagcaaatcatgaagaggttatcaatgccatcatccgtgatgtagacactgataaggatggcaagataagctatgatgagtttgcggcaatgatgaaggccggaacagattggaggaaagcctcaagacaatattcaagagaacggttcactagcctcagcctaaaacttcagaaagatggatcattgcagttaacaactacccaatag
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| Protein seq | MGNCCVTPEGSGRGRKKQQQEQKQKQKEPKQQQQQQKKGKKPNPFSIEYNRSSAPSGHRLVVLREPTGRDIAARYELGGELGRGEFGVTYLCTERETGDAYACKSISKKKLRTAVDIEDVRREVDIMRHLPKHPNIVTLRDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAALVTRTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFTPGERFTEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPRVSDNAKDLVKGMLNPDPRRRLNAQQVLDHPWLQNIKKAPNVNLGETVKARLQQFSVMNKFKKHALRVIAEHLSVEEVAGIKDMFEKMDLNKDNMINFDELKLGLHKLGHQMADADADVDGNGSLDYGEFVALSVHLRKIGNDEHLHKAFAYFDRNQSGYIEIDELRESLADDLGANHEEVINAIIRDVDTDKDGKISYDEFAAMMKAGTDWRKASRQYSRERFTSLSLKLQKDGSLQLTTTQ |
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| Function | Calcium-dependent protein kinase 20 [UniProtKB/Swiss-Prot:Q84SL0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0019670 | OsLima_07g0019670.01 | Chr07 | 23817847 | 23821723 | - | NAM | ||
| CDS seq | atgggcaactgctgcgtgacgccggagggcagcggccgcgggaggaagaagcagcagcaggagcagaagcagaagcagaaggagccgaagcagcagcagcagcagcagaagaaggggaagaagccgaacccgttctcgatcgagtacaaccggtcgtcggcgccgtcggggcacaggctggtggtgctgcgcgagccgacggggcgggacatcgccgcgcggtacgagctgggcggggagctcgggcgcggcgagttcggggtcacctacctctgcacggagcgggagacgggggacgcctacgcgtgcaagtccatctccaagaagaagctccgcaccgccgtggacatcgaggacgtgcgccgggaggtggacatcatgcgccacctccccaagcaccccaacatcgtcacgctccgggacacctacgaggacgacaatgccgtccacctcgtcatggagctctgcgagggcggggagctcttcgaccggatcgtcgcccggggccactacaccgagcgcgccgccgcgctggtcacccgcaccatcgtcgaggtcgtgcagatgtgccataagcatggagtgatgcaccgggacctcaaaccagagaatttcttgtttgcaaacaagaaggaaactgcagctctgaaggcaattgattttggcctgtctgtttttttcaccccaggtgaacggttcactgagattgtcggaagtccttattacatggctcctgaggtgctaaagagaaattatggccccgaggttgatgtttggagtgcaggagtgatcctttacattcttctttgtggagtccctccattttgggcagaaactgaacagggtgttgctcaggcaattatccgttctgtcattgacttcaagagagacccatggccaagggtctcagataatgcaaaggatcttgtcaagggaatgctcaatccagaccctaggcggcggctaaatgctcaacaagtgcttgatcatccttggttacagaacattaagaaggctccaaatgtaaatttaggcgaaactgttaaggccagacttcaacaattctctgtgatgaacaagttcaagaagcatgcacttagggtcatagctgagcatctttcggtagaagaggttgctggtataaaggacatgtttgagaagatggatctcaacaaagataatatgattaattttgatgagctgaagcttggcctgcataaacttgggcaccaaatggctgatgcagatgcggatgtcgatggaaatggatctttagactacggggagtttgttgctctatctgttcacctgagaaagattggcaacgatgagcatctgcacaaggcatttgcatactttgatcggaaccagagtggatatattgaaatcgatgagctccgtgaatcattggctgatgacctgggagcaaatcatgaagaggttatcaatgccatcatccgtgatgtagacactgataaggatggcaagataagctatgatgagtttgcggcaatgatgaaggccggaacagattggaggaaagcctcaagacaatattcaagagaacggttcactagcctcagcctaaaacttcagaaagatggatcattgcagttaacaactacccaatag
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| Protein seq | MGNCCVTPEGSGRGRKKQQQEQKQKQKEPKQQQQQQKKGKKPNPFSIEYNRSSAPSGHRLVVLREPTGRDIAARYELGGELGRGEFGVTYLCTERETGDAYACKSISKKKLRTAVDIEDVRREVDIMRHLPKHPNIVTLRDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAALVTRTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFTPGERFTEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPRVSDNAKDLVKGMLNPDPRRRLNAQQVLDHPWLQNIKKAPNVNLGETVKARLQQFSVMNKFKKHALRVIAEHLSVEEVAGIKDMFEKMDLNKDNMINFDELKLGLHKLGHQMADADADVDGNGSLDYGEFVALSVHLRKIGNDEHLHKAFAYFDRNQSGYIEIDELRESLADDLGANHEEVINAIIRDVDTDKDGKISYDEFAAMMKAGTDWRKASRQYSRERFTSLSLKLQKDGSLQLTTTQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0019670 | OsLima_07g0019670.02 | Chr07 | 23817964 | 23821759 | - | IsoSeq | ||
| CDS seq | ggctttaccactggcggattcccacacgccccccagccgccgccacggctgaccccgtctccccaccgaatccaccccacctcccaatttaaccccctcctcctcctcctcccccctctcgcctccttctcctccctcccccaacgcgtcacgccgccatttcttggcctcccactcgccgcagat |
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| Protein seq | GFTTGGFPHAPQPPPRLTPSPHRIHPTSQFNPLLLLLPPLASFSSLPQRVTPPFLGLPLAAD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 23818800 | 23819016 | - | OsLima_07g0019670.02 | OsLima_07g0019670.01,OsLima_07g0019670.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.469571 | 0.333717 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0568600 | RBH | 2.829612 | 0.777521 | 7.034902 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g38120 | RBH | 1.906264 | 0.575547 | 1.640495 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0568600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020050 | RBH | 0.632749 | 21.911274 | 9.047798 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0019970 | RBH | 0.272677 | 5.311417 | 3.157836 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019930 | RBH | 1.062663 | 16.774719 | 14.006450 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0019820 | RBH | 0.327210 | 0.555506 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0019870 | RBH | 5.569218 | 17.646053 | 24.963726 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0374000 | RBH | 18.033027 | 132.521095 | 14.9140085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020340 | RBH | 0.634023 | 1.314869 | 1.607481 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0386400 | RBH | 20.058158 | 138.1078265 | 19.6881095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039010 | RBH | 0.158393 | 0.102886 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019770 | RBH | 0.814395 | 18.789995 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019720 | RBH | 6.761291 | 33.148022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019890 | RBH | 2.503676 | 3.225433 | 2.521610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019680 | RBH | 0.310861 | 17.931412 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019590 | RBH | 0.569703 | 5.322103 | 6.520899 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019680 | RBH | 2.839473 | 31.662302 | 13.989067 |
