Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0018540 | OGI:07061290 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:22710102-22712553 | ||||||||
| Gene Symbol | SDRLK-39 | ||||||||||
| DNA seq | ttacaatattgttctacatcaaattaacatatatatacgcaaattaaatcatgtaggtatgacagaacatatctgatgttttcttgaaacattcTtttttaagcgaataatatctgctataccttaactttacttattatggcctatttggttgccaccatttatcaacaaaagctaccaaacatgcttaatataaggtaggtgcttaaaatccttgtcacaccatagcaagtctaaaaatatcattgccaacacttttatgagtaaacaaacacatgtgagatagtttgttaaaagaaaatcttatcataattgtggttgtaaccaaacagatgactaagaccctattctatttgacacatctatagatcctagatcatgttggatttttaggttgtacaagggtttaaatttttatatttctctaatataagcaaaatagtttattcaaatgtcatcagtataatcataattatggatccatggattttgagaactagtaatacctagctttaagaaaatcgtatatatgaagatgttacatacgatctaagttgaccaaatttgtctaatagttctatgaccactaatgtacctatcactttttatattaaaaaacatactacatcctcaaaagttatgttgtaagtgtagtgaaataattacataatactaccacttttttcaatggcaccattgactttcaaacacatgttttactatctatcttatttaaaaatttatataattattatttatttttaagttcTttttttaaaaaatactttaaccataatttttattttctacattcgtacaatttttttaataagtcaaatggttaaaatgtgtttaaaattaatgacctcgtctattaaaaacgaaggaaagtatatggcatacgaactagagaggagaggagaatcatacgcaaatcggatgcggcgagacgcatgaacaggtcctcgccgccataggagaacttcctgatgtccacgagcggcgagctccacatgatgcagccgctcccgcctcccctgacgtcggacgcggcgtacgccacgcaggagcagttggccaggcacctcgccctgcactggtcgacggcgatggccgcgtccaccgtcgcgttggtggtgtcgggaagcttcacgccgcgcagcggcaggaacccgtcgcccgtgcagttgagccgcgtccgccgcgcgcacccggcggagctgtccctgagctcccagttcctgggcgacgccggcgcgaacccggccgggcagccgcacatcgacgcggcgccgacgtcgcagacgccgtaggcgccgcagtgcgcgtactggtcgcactggtcccgcggcagcgaccagtagaggctccacccgccggcctgcggcagccacacgtaccgctgcgcgctcgactggttcagcacgaacctcgagaggactccgccgccgccgccgccgtcgacgacgaaggtgtagtagacgtcggtgcggttggcgacgaactcgaagcggaagctggtgttgttgggctccatctccggctcgccgctgaactgcagcccgtcccacggcccgttccggtacaccggcgacgtgccgttgtaccagatgaacccctccggcgcgccgcgcgggtcgatcttgaacgtgtagtcgcccggcgacgggtcgccggcgctcctccacgtcgtcaggtagcggtcgagcccggtggtgaggtcccacccaaacttcatgccggggagcagagtgtccgacgggtaatcgaagctctgccagatcacatccccggagccaccgccgccggcgagcacgaagttgccactatccaacagcctcgccgccacaggatcactcgcggttacgttcgacggcgccgacgaccacaccactcgccccgacccatcgccgagcaccagacgaccaccgccgccgccgccgccgccgttgacgacgacagccaagctcccggccgtgccgctcaccggagcatcccggttggccacccacaccacggtcggcggatcgatgtccctgtaccatattcccaagaacctcgccgccgtcgtcgagcccggcggggtgaagaacccgagctcgaagaccccaccggccgagacaagcttctggccatcggcgagagatgagttggcaagaatgttgtcactcgcggaggcggcaagggagaagaagaagaaaaggaagaggggagctaatggccgcatggcgctcgccgcagccatggccatcgtgaccatgtggcgcccgaaagcaccacgcactcacacggctcctactaagatgggcgagaaaaattttaaaaccgcaccttgttttagctggaatacttgtgcaaattgaacactcgcctactcattcaatggaatgttgcattcgccattttcgctttgtcgcgcgcgcatccaggaactgtggctactgagcacgat
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| CDS seq | atggtcacgatggccatggctgcggcgagcgccatgcggccattagctcccctcttccttttcttcttcttctcccttgccgcctccgcgagtgacaacattcttgccaactcatctctcgccgatggccagaagcttgtctcggccggtggggtcttcgagctcgggttcttcaccccgccgggctcgacgacggcggcgaggttcttgggaatatggtacagggacatcgatccgccgaccgtggtgtgggtggccaaccgggatgctccggtgagcggcacggccgggagcttggctgtcgtcgtcaacggcggcggcggcggcggcggtggtcgtctggtgctcggcgatgggtcggggcgagtggtgtggtcgtcggcgccgtcgaacgtaaccgcgagtgatcctgtggcggcgaggctgttggatagtggcaacttcgtgctcgccggcggcggtggctccggggatgtgatctggcagagcttcgattacccgtcggacactctgctccccggcatgaagtttgggtgggacctcaccaccgggctcgaccgctacctgacgacgtggaggagcgccggcgacccgtcgccgggcgactacacgttcaagatcgacccgcgcggcgcgccggaggggttcatctggtacaacggcacgtcgccggtgtaccggaacgggccgtgggacgggctgcagttcagcggcgagccggagatggagcccaacaacaccagcttccgcttcgagttcgtcgccaaccgcaccgacgtctactacaccttcgtcgtcgacggcggcggcggcggcggagtcctctcgaggttcgtgctgaaccagtcgagcgcgcagcggtacgtgtggctgccgcaggccggcgggtggagcctctactggtcgctgccgcgggaccagtgcgaccagtacgcgcactgcggcgcctacggcgtctgcgacgtcggcgccgcgtcgatgtgcggctgcccggccgggttcgcgccggcgtcgcccaggaactgggagctcagggacagctccgccgggtgcgcgcggcggacgcggctcaactgcacgggcgacgggttcctgccgctgcgcggcgtgaagcttcccgacaccaccaacgcgacggtggacgcggccatcgccgtcgaccagtgcagggcgaggtgcctggccaactgctcctgcgtggcgtacgccgcgtccgacgtcaggggaggcgggagcggctgcatcatgtggagctcgccgctcgtggacatcaggaagttctcctatggcggcgaggacctaacaatattgtaa
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| Protein seq | MVTMAMAAASAMRPLAPLFLFFFFSLAASASDNILANSSLADGQKLVSAGGVFELGFFTPPGSTTAARFLGIWYRDIDPPTVVWVANRDAPVSGTAGSLAVVVNGGGGGGGGRLVLGDGSGRVVWSSAPSNVTASDPVAARLLDSGNFVLAGGGGSGDVIWQSFDYPSDTLLPGMKFGWDLTTGLDRYLTTWRSAGDPSPGDYTFKIDPRGAPEGFIWYNGTSPVYRNGPWDGLQFSGEPEMEPNNTSFRFEFVANRTDVYYTFVVDGGGGGGVLSRFVLNQSSAQRYVWLPQAGGWSLYWSLPRDQCDQYAHCGAYGVCDVGAASMCGCPAGFAPASPRNWELRDSSAGCARRTRLNCTGDGFLPLRGVKLPDTTNATVDAAIAVDQCRARCLANCSCVAYAASDVRGGGSGCIMWSSPLVDIRKFSYGGEDLTIL |
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| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0018540 | OsLima_07g0018540.01 | Chr07 | 22710102 | 22712553 | - | NAM | ||
| CDS seq | atggtcacgatggccatggctgcggcgagcgccatgcggccattagctcccctcttccttttcttcttcttctcccttgccgcctccgcgagtgacaacattcttgccaactcatctctcgccgatggccagaagcttgtctcggccggtggggtcttcgagctcgggttcttcaccccgccgggctcgacgacggcggcgaggttcttgggaatatggtacagggacatcgatccgccgaccgtggtgtgggtggccaaccgggatgctccggtgagcggcacggccgggagcttggctgtcgtcgtcaacggcggcggcggcggcggcggtggtcgtctggtgctcggcgatgggtcggggcgagtggtgtggtcgtcggcgccgtcgaacgtaaccgcgagtgatcctgtggcggcgaggctgttggatagtggcaacttcgtgctcgccggcggcggtggctccggggatgtgatctggcagagcttcgattacccgtcggacactctgctccccggcatgaagtttgggtgggacctcaccaccgggctcgaccgctacctgacgacgtggaggagcgccggcgacccgtcgccgggcgactacacgttcaagatcgacccgcgcggcgcgccggaggggttcatctggtacaacggcacgtcgccggtgtaccggaacgggccgtgggacgggctgcagttcagcggcgagccggagatggagcccaacaacaccagcttccgcttcgagttcgtcgccaaccgcaccgacgtctactacaccttcgtcgtcgacggcggcggcggcggcggagtcctctcgaggttcgtgctgaaccagtcgagcgcgcagcggtacgtgtggctgccgcaggccggcgggtggagcctctactggtcgctgccgcgggaccagtgcgaccagtacgcgcactgcggcgcctacggcgtctgcgacgtcggcgccgcgtcgatgtgcggctgcccggccgggttcgcgccggcgtcgcccaggaactgggagctcagggacagctccgccgggtgcgcgcggcggacgcggctcaactgcacgggcgacgggttcctgccgctgcgcggcgtgaagcttcccgacaccaccaacgcgacggtggacgcggccatcgccgtcgaccagtgcagggcgaggtgcctggccaactgctcctgcgtggcgtacgccgcgtccgacgtcaggggaggcgggagcggctgcatcatgtggagctcgccgctcgtggacatcaggaagttctcctatggcggcgaggacctaacaatattgtaa
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| Protein seq | MVTMAMAAASAMRPLAPLFLFFFFSLAASASDNILANSSLADGQKLVSAGGVFELGFFTPPGSTTAARFLGIWYRDIDPPTVVWVANRDAPVSGTAGSLAVVVNGGGGGGGGRLVLGDGSGRVVWSSAPSNVTASDPVAARLLDSGNFVLAGGGGSGDVIWQSFDYPSDTLLPGMKFGWDLTTGLDRYLTTWRSAGDPSPGDYTFKIDPRGAPEGFIWYNGTSPVYRNGPWDGLQFSGEPEMEPNNTSFRFEFVANRTDVYYTFVVDGGGGGGVLSRFVLNQSSAQRYVWLPQAGGWSLYWSLPRDQCDQYAHCGAYGVCDVGAASMCGCPAGFAPASPRNWELRDSSAGCARRTRLNCTGDGFLPLRGVKLPDTTNATVDAAIAVDQCRARCLANCSCVAYAASDVRGGGSGCIMWSSPLVDIRKFSYGGEDLTIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0550500 | RBH | 0.513497 | 0.570850 | 0.209521 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g36544 | RBH | 0.326072 | 0.360526 | 0.050645 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0550500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018840 | RBH | 0.0 | 0.716936 | 0.425389 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018780 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018730 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0357200 | RBH | 0.9144775 | 3.3202 | 1.040089 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0019210 | RBH | 0.0 | 0.106083 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0369300 | RBH | 1.06621 | 13.0895455 | 0.015084 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0018560 | SBH | 0.000000 | 0.134708 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018640 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018510 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018810 | RBH | 0.000000 | 0.157161 | 0.188187 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018640 | RBH | 0.0 | 0.912882 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018490 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018610 | RBH | 0.0 | 0.0 | 0.0 |
