Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0018030 | OGI:07060020 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:22373422-22377762 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggacaccgtcaccgtcggcggcggaggagagcaccgggtgcaggtagcagcagccaagccctgcggcgggcagcaacagcaaggcaagaaggcagccgcgccggagaagtggctgaatggcttcgttagcttggtggcgctggtcgagagggtgggcaacgcgctcggcacgctggccttcacctgggctaccgtcgtcctgctcggcggatacccgacgtccctgacggcactcggctcgtacaacgatttttggttcgcgacagccataatcttcctagaatccgccaggttagggcctatttgttctgtttccattgtgttgatttccaatggattggggattttttttctttttttagagaatagtatttttacccggcctatacatctaacatgatacatgtatccttttaaatcgggaacttagtccctcaaacaactcaatctgaattcgctcttatggggatttaaagttggagtgtttctcaggtcactgcaatcggccaatcactagtctgcatacccttttgcaatcgattgggaatacatggcgatcgccgatcagctggaggcggctcctctgccgtcacaacagacaatatgcatcgccataagtttctggattactatatatgatttcatttgctccatacttctaaaaatactatttctcaaaaaaaacactttttatatattgattagaacatttatatctttttataagctatttattaggtttttaacgtatagtaagacttaatctttcctataagcaaattgataatccattaagttaagaaatggtaatccattatttttcattcacaaataatctaaaaggaactctgccttgcacattctttattgtttgaatgattttacagttcttgaggagatatcgggaggtatcacattttttaacgtaaaatttagtatctctcagttccttcaatgctaggaggtataaaaatttctctcaatgcttctcaaggactataaaatttatcttaatgtttacttacacatcctatatacttcaggatgtttagtggcagcaacaacaggtccgattaccaattgttcttccgaaccaaaggtgctttcagacctcttgactggaactggctgatcgccatcgtctgcattctggatgtttggaagctgttgattccccttccccataagaatgttatggcagctgtagtgctttatgctatgataattctgcttatacttggcaagagtatgactccaaagtttcagccatcactacgcaacccgttacgccgtgccatatcactatggagccccttagctgcgatactgttgatgactccagccatgcagcatgaccattcaagggactttgtcaggaacattacaggaaacggatcgataaccacaagaacgggtggcttcgctccaactaggtccacagtagttgccaaatggatagtatttctactattgctggtatccgtcctcgtggtgacaatcagcaggctaaagttcccaagaatcatcaaattgttagatagtgcttggggcagaaaactagtgtcttggcgtcgatctattcagaacatttgcatgcttgctgcgctagtgatggtagtactgactactgatggcttctttcggttcatgataatcgggatgctagtcattgttgctgtgatggtgtcgtcgggcaacttgcagataccagcagcagtcttgcgtgttgtgttcgcaggcctcgcactgtcacaccttatggcactacataagaacaacaaagaagacgaagagactaacctggtaccatctctcattgtcttctatgcgatggtgacggcccaaggaatactctacaccgtggcatgcaccctcgagatcttctcattcatcccccggagatccctcatccggcgtgctggattcagaggtcagctgggagtggaatatgtcaatctgtattatgcatatgccttggagaaatgcatggaaaaggctgtgtttgctccgaagaaaaccagcctgggcaactttgccatggattccctgaactcagactctcccaagaatcatctctatgggattcaactgatgcatagccttctggagaaggagacgacaagggcgcggctccttgaaaagctcatcacttctacaaagaccatggctaggataataagtatgttgggctggactagcccaaattatatgatggtcagattatatgccgcgaaagtaactgctgagcttgcgaaggacctccaagttatcgctgttcctagggcaatgcagcttgtgtctgcccttctggacaccgatggcaaacttaaaaagggaaatccacttctgcaggtagacgatgaacaagaggagaggcaggatcccattctcagcacagcaaatagccaagaggaaagaccgaatgcaattaggaatgcagatgatcccccaaagcaaagacaacaagagacacttcaaggcactgataacctgccggagacacaaactcgatcagcccacatccatgaacagaactgcataatcagaagcttgcagaagatttcagagtactggacagttcccaaggagcatccattgacataccatgatcaacttcctgcacttggcatgttgattgttgacaagcttgctagttgtgatcaaaataactgtgtggaaattgatagagtaactgacctcattccgaagatcataggatttacaagcttcagaagtgacacaatgaacagtgaagcacagcaaatggtcctagtgaagtcatcactgaaggtgttgcagaggctgacaagcattgaaggggaaatcggcaaagcactgcggtacaagatatcgaagcatcccttcttgttaagaaacctcgcagatatcttgggagacaacatcagagaccaagaattaaaaaagcttgcagtaggaatcctcagaaacatttccattgatggtaacacaaggcaggagattgggaacatgaaggtgctcataaccagactgatgaaggcattcctcgacttacatagaacctccaacacagatgttgatttcttgctaccaaaggtcgccgggcaagcactagcaatgctagcaatggataatgtgcacaactgcttagttatgttgaaggaaccagagttcattactaaactcaaaaatatgatcctgatccaagatgaaaagtacatatatgtggcgccaagcctgttacgtagtatgtgccagcatgcccaagctaagctcacagaattagacctaaaagaactatctcacaccttacgagaggtgagccctgctacttaatgctacagatgcaatatttgaggtggatagtgtggtatgcttttttgcataaattattttatgttagaggagggaattccacctgcatttttttcaaactgggtcatttattactagtaaaatagagtataatataccgtgttttgctgaattatgttgttaccaatcatgctacattatccactacaggtgttggaaagaataatgaatgctgaaggggcagaactagagattctcattggccttagttcacagatatgcaaagtcaatcctgaagaatttgcccaagagctagatcacggacatattaggcaaagatttgtgaagaggctagtggatgcactgaatgcaaacatgaaaccaagtgctcactgccctgggatccggagggtgatacttgagcaatccatatacatgatggagtgcaattctcactatgccaattgtttcaatgaattccggatgatggacgcactgtcaattgtagaagaaacgccctcaaaggttgagaactacatggttttcttgggtgatgtaggctttatggaatgcggcacacctctctttgctctagtggacagagcaaaagaactgatgggtcgtcaatggttgcaaggaatcaacaactaaaagtaattgtatgagatgatttctcatttacagttacagtgatttagtctattgtgcattgcaatccaaatgccgtaaatttttagttgatgcatgttgtggccatggtaaaagaaataaacagaaaatgatggcattggagtccgaaggccatgcatattactaacatgtggtaaaaagaaaaaagtgaatgtgcacatggcctttctagaaagaacacgatttgcctctgagatgagaaaatactattgtaattgtacctcattagtttctttttagaaaatggaataaacccgacctctacatccaaccggatgtacacggccaacctcattagtactgcattgtaatatgtttgcctgcttttctaatgatgatttgtcccattatc
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| CDS seq | atggcggacaccgtcaccgtcggcggcggaggagagcaccgggtgcaggtagcagcagccaagccctgcggcgggcagcaacagcaaggcaagaaggcagccgcgccggagaagtggctgaatggcttcgttagcttggtggcgctggtcgagagggtgggcaacgcgctcggcacgctggccttcacctgggctaccgtcgtcctgctcggcggatacccgacgtccctgacggcactcggctcgtacaacgatttttggttcgcgacagccataatcttcctagaatccgccagacctcttgactggaactggctgatcgccatcgtctgcattctggatgtttggaagctgttgattccccttccccataagaatgttatggcagctgtagtgctttatgctatgataattctgcttatacttggcaagagtatgactccaaagtttcagccatcactacgcaacccgttacgccgtgccatatcactatggagccccttagctgcgatactgttgatgactccagccatgcagcatgaccattcaagggactttgtcaggaacattacaggaaacggatcgataaccacaagaacgggtggcttcgctccaactaggtccacagtagttgccaaatggatagtatttctactattgctggtatccgtcctcgtggtgacaatcagcaggctaaagttcccaagaatcatcaaattgttagatagtgcttggggcagaaaactagtgtcttggcgtcgatctattcagaacatttgcatgcttgctgcgctagtgatggtagtactgactactgatggcttctttcggttcatgataatcgggatgctagtcattgttgctgtgatggtgtcgtcgggcaacttgcagataccagcagcagtcttgcgtgttgtgttcgcaggcctcgcactgtcacaccttatggcactacataagaacaacaaagaagacgaagagactaacctggtaccatctctcattgtcttctatgcgatggtgacggcccaaggaatactctacaccgtggcatgcaccctcgagatcttctcattcatcccccggagatccctcatccggcgtgctggattcagaggtcagctgggagtggaatatgtcaatctgtattatgcatatgccttggagaaatgcatggaaaaggctgtgtttgctccgaagaaaaccagcctgggcaactttgccatggattccctgaactcagactctcccaagaatcatctctatgggattcaactgatgcatagccttctggagaaggagacgacaagggcgcggctccttgaaaagctcatcacttctacaaagaccatggctaggataataagtatgttgggctggactagcccaaattatatgatggtcagattatatgccgcgaaagtaactgctgagcttgcgaaggacctccaagttatcgctgttcctagggcaatgcagcttgtgtctgcccttctggacaccgatggcaaacttaaaaagggaaatccacttctgcaggtagacgatgaacaagaggagaggcaggatcccattctcagcacagcaaatagccaagaggaaagaccgaatgcaattaggaatgcagatgatcccccaaagcaaagacaacaagagacacttcaaggcactgataacctgccggagacacaaactcgatcagcccacatccatgaacagaactgcataatcagaagcttgcagaagatttcagagtactggacagttcccaaggagcatccattgacataccatgatcaacttcctgcacttggcatgttgattgttgacaagcttgctagttgtgatcaaaataactgtgtggaaattgatagagtaactgacctcattccgaagatcataggatttacaagcttcagaagtgacacaatgaacagtgaagcacagcaaatggtcctagtgaagtcatcactgaaggtgttgcagaggctgacaagcattgaaggggaaatcggcaaagcactgcggtacaagatatcgaagcatcccttcttgttaagaaacctcgcagatatcttgggagacaacatcagagaccaagaattaaaaaagcttgcagtaggaatcctcagaaacatttccattgatggtaacacaaggcaggagattgggaacatgaaggtgctcataaccagactgatgaaggcattcctcgacttacatagaacctccaacacagatgttgatttcttgctaccaaaggtcgccgggcaagcactagcaatgctagcaatggataatgtgcacaactgcttagttatgttgaaggaaccagagttcattactaaactcaaaaatatgatcctgatccaagatgaaaagtacatatatgtggcgccaagcctgttacgtagtatgtgccagcatgcccaagctaagctcacagaattagacctaaaagaactatctcacaccttacgagaggtgttggaaagaataatgaatgctgaaggggcagaactagagattctcattggccttagttcacagatatgcaaagtcaatcctgaagaatttgcccaagagctagatcacggacatattaggcaaagatttgtgaagaggctagtggatgcactgaatgcaaacatgaaaccaagtgctcactgccctgggatccggagggtgatacttgagcaatccatatacatgatggagtgcaattctcactatgccaattgtttcaatgaattccggatgatggacgcactgtcaattgtagaagaaacgccctcaaaggttgagaactacatggttttcttgggtgatgtaggctttatggaatgcggcacacctctctttgctctagtggacagagcaaaagaactgatgggtcgtcaatggttgcaaggaatcaacaactaa
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| Protein seq | MADTVTVGGGGEHRVQVAAAKPCGGQQQQGKKAAAPEKWLNGFVSLVALVERVGNALGTLAFTWATVVLLGGYPTSLTALGSYNDFWFATAIIFLESARPLDWNWLIAIVCILDVWKLLIPLPHKNVMAAVVLYAMIILLILGKSMTPKFQPSLRNPLRRAISLWSPLAAILLMTPAMQHDHSRDFVRNITGNGSITTRTGGFAPTRSTVVAKWIVFLLLLVSVLVVTISRLKFPRIIKLLDSAWGRKLVSWRRSIQNICMLAALVMVVLTTDGFFRFMIIGMLVIVAVMVSSGNLQIPAAVLRVVFAGLALSHLMALHKNNKEDEETNLVPSLIVFYAMVTAQGILYTVACTLEIFSFIPRRSLIRRAGFRGQLGVEYVNLYYAYALEKCMEKAVFAPKKTSLGNFAMDSLNSDSPKNHLYGIQLMHSLLEKETTRARLLEKLITSTKTMARIISMLGWTSPNYMMVRLYAAKVTAELAKDLQVIAVPRAMQLVSALLDTDGKLKKGNPLLQVDDEQEERQDPILSTANSQEERPNAIRNADDPPKQRQQETLQGTDNLPETQTRSAHIHEQNCIIRSLQKISEYWTVPKEHPLTYHDQLPALGMLIVDKLASCDQNNCVEIDRVTDLIPKIIGFTSFRSDTMNSEAQQMVLVKSSLKVLQRLTSIEGEIGKALRYKISKHPFLLRNLADILGDNIRDQELKKLAVGILRNISIDGNTRQEIGNMKVLITRLMKAFLDLHRTSNTDVDFLLPKVAGQALAMLAMDNVHNCLVMLKEPEFITKLKNMILIQDEKYIYVAPSLLRSMCQHAQAKLTELDLKELSHTLREVLERIMNAEGAELEILIGLSSQICKVNPEEFAQELDHGHIRQRFVKRLVDALNANMKPSAHCPGIRRVILEQSIYMMECNSHYANCFNEFRMMDALSIVEETPSKVENYMVFLGDVGFMECGTPLFALVDRAKELMGRQWLQGINN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0018030 | OsLima_07g0018030.01 | Chr07 | 22373422 | 22377762 | + | NAM | ||
| CDS seq | atggcggacaccgtcaccgtcggcggcggaggagagcaccgggtgcaggtagcagcagccaagccctgcggcgggcagcaacagcaaggcaagaaggcagccgcgccggagaagtggctgaatggcttcgttagcttggtggcgctggtcgagagggtgggcaacgcgctcggcacgctggccttcacctgggctaccgtcgtcctgctcggcggatacccgacgtccctgacggcactcggctcgtacaacgatttttggttcgcgacagccataatcttcctagaatccgccagacctcttgactggaactggctgatcgccatcgtctgcattctggatgtttggaagctgttgattccccttccccataagaatgttatggcagctgtagtgctttatgctatgataattctgcttatacttggcaagagtatgactccaaagtttcagccatcactacgcaacccgttacgccgtgccatatcactatggagccccttagctgcgatactgttgatgactccagccatgcagcatgaccattcaagggactttgtcaggaacattacaggaaacggatcgataaccacaagaacgggtggcttcgctccaactaggtccacagtagttgccaaatggatagtatttctactattgctggtatccgtcctcgtggtgacaatcagcaggctaaagttcccaagaatcatcaaattgttagatagtgcttggggcagaaaactagtgtcttggcgtcgatctattcagaacatttgcatgcttgctgcgctagtgatggtagtactgactactgatggcttctttcggttcatgataatcgggatgctagtcattgttgctgtgatggtgtcgtcgggcaacttgcagataccagcagcagtcttgcgtgttgtgttcgcaggcctcgcactgtcacaccttatggcactacataagaacaacaaagaagacgaagagactaacctggtaccatctctcattgtcttctatgcgatggtgacggcccaaggaatactctacaccgtggcatgcaccctcgagatcttctcattcatcccccggagatccctcatccggcgtgctggattcagaggtcagctgggagtggaatatgtcaatctgtattatgcatatgccttggagaaatgcatggaaaaggctgtgtttgctccgaagaaaaccagcctgggcaactttgccatggattccctgaactcagactctcccaagaatcatctctatgggattcaactgatgcatagccttctggagaaggagacgacaagggcgcggctccttgaaaagctcatcacttctacaaagaccatggctaggataataagtatgttgggctggactagcccaaattatatgatggtcagattatatgccgcgaaagtaactgctgagcttgcgaaggacctccaagttatcgctgttcctagggcaatgcagcttgtgtctgcccttctggacaccgatggcaaacttaaaaagggaaatccacttctgcaggtagacgatgaacaagaggagaggcaggatcccattctcagcacagcaaatagccaagaggaaagaccgaatgcaattaggaatgcagatgatcccccaaagcaaagacaacaagagacacttcaaggcactgataacctgccggagacacaaactcgatcagcccacatccatgaacagaactgcataatcagaagcttgcagaagatttcagagtactggacagttcccaaggagcatccattgacataccatgatcaacttcctgcacttggcatgttgattgttgacaagcttgctagttgtgatcaaaataactgtgtggaaattgatagagtaactgacctcattccgaagatcataggatttacaagcttcagaagtgacacaatgaacagtgaagcacagcaaatggtcctagtgaagtcatcactgaaggtgttgcagaggctgacaagcattgaaggggaaatcggcaaagcactgcggtacaagatatcgaagcatcccttcttgttaagaaacctcgcagatatcttgggagacaacatcagagaccaagaattaaaaaagcttgcagtaggaatcctcagaaacatttccattgatggtaacacaaggcaggagattgggaacatgaaggtgctcataaccagactgatgaaggcattcctcgacttacatagaacctccaacacagatgttgatttcttgctaccaaaggtcgccgggcaagcactagcaatgctagcaatggataatgtgcacaactgcttagttatgttgaaggaaccagagttcattactaaactcaaaaatatgatcctgatccaagatgaaaagtacatatatgtggcgccaagcctgttacgtagtatgtgccagcatgcccaagctaagctcacagaattagacctaaaagaactatctcacaccttacgagaggtgttggaaagaataatgaatgctgaaggggcagaactagagattctcattggccttagttcacagatatgcaaagtcaatcctgaagaatttgcccaagagctagatcacggacatattaggcaaagatttgtgaagaggctagtggatgcactgaatgcaaacatgaaaccaagtgctcactgccctgggatccggagggtgatacttgagcaatccatatacatgatggagtgcaattctcactatgccaattgtttcaatgaattccggatgatggacgcactgtcaattgtagaagaaacgccctcaaaggttgagaactacatggttttcttgggtgatgtaggctttatggaatgcggcacacctctctttgctctagtggacagagcaaaagaactgatgggtcgtcaatggttgcaaggaatcaacaactaa
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| Protein seq | MADTVTVGGGGEHRVQVAAAKPCGGQQQQGKKAAAPEKWLNGFVSLVALVERVGNALGTLAFTWATVVLLGGYPTSLTALGSYNDFWFATAIIFLESARPLDWNWLIAIVCILDVWKLLIPLPHKNVMAAVVLYAMIILLILGKSMTPKFQPSLRNPLRRAISLWSPLAAILLMTPAMQHDHSRDFVRNITGNGSITTRTGGFAPTRSTVVAKWIVFLLLLVSVLVVTISRLKFPRIIKLLDSAWGRKLVSWRRSIQNICMLAALVMVVLTTDGFFRFMIIGMLVIVAVMVSSGNLQIPAAVLRVVFAGLALSHLMALHKNNKEDEETNLVPSLIVFYAMVTAQGILYTVACTLEIFSFIPRRSLIRRAGFRGQLGVEYVNLYYAYALEKCMEKAVFAPKKTSLGNFAMDSLNSDSPKNHLYGIQLMHSLLEKETTRARLLEKLITSTKTMARIISMLGWTSPNYMMVRLYAAKVTAELAKDLQVIAVPRAMQLVSALLDTDGKLKKGNPLLQVDDEQEERQDPILSTANSQEERPNAIRNADDPPKQRQQETLQGTDNLPETQTRSAHIHEQNCIIRSLQKISEYWTVPKEHPLTYHDQLPALGMLIVDKLASCDQNNCVEIDRVTDLIPKIIGFTSFRSDTMNSEAQQMVLVKSSLKVLQRLTSIEGEIGKALRYKISKHPFLLRNLADILGDNIRDQELKKLAVGILRNISIDGNTRQEIGNMKVLITRLMKAFLDLHRTSNTDVDFLLPKVAGQALAMLAMDNVHNCLVMLKEPEFITKLKNMILIQDEKYIYVAPSLLRSMCQHAQAKLTELDLKELSHTLREVLERIMNAEGAELEILIGLSSQICKVNPEEFAQELDHGHIRQRFVKRLVDALNANMKPSAHCPGIRRVILEQSIYMMECNSHYANCFNEFRMMDALSIVEETPSKVENYMVFLGDVGFMECGTPLFALVDRAKELMGRQWLQGINN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.074950 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0543500 | RBH | 0.0 | 0.661925 | 0.396358 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35960 | RBH | 0.0 | 0.448177 | 0.102712 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0543500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018390 | RBH | 1.029203 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018320 | RBH | 0.215378 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018270 | RBH | 0.0 | 0.0 | 0.213787 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018150 | RBH | 0.060790 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018300 | RBH | 0.0 | 0.0 | 1.424226 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0352200 | RBH | 0.0449215 | 0.1534765 | 0.0235135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018800 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0363300 | RBH | 0.0006055 | 0 | 0.0830695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018080 | RBH | 4.495772 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025890 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025500 | SBH | 0.0 | 0.103880 | 0.153150 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018150 | RBH | 0.000000 | 1.328304 | 0.0 |
