Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0017660 | OGI:07058920 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:21943159-21951714 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagtaacctcaaatgtacttattccttcattccgatgctccatgtaatgcacgtgggcttgtacaaaaattgtgcaaacttttcatgattcttacattgtccgtacagtagcacaatcctcctttcagagtgggagccactaatcagcagcgcaagaagttccatatcctggaccgatcgaagctctctctatgacaggttctacactgacgcggtcgactcgtcggacgcgacgccgggtttagcgccgccgttcctggcgaagaacgccggcttggagggcacctggagggagaccgtctcgctgtcgagcatcatcaccaccgacgacatcaccggccgatccgcGgggttttcctgcacgcacaggagcgctacgtggacgcacttccgcacgtcgctcgccgagacgtacctgctcatggccgggtctaccatctcatccacggttccggccatccaacgctcccatatctgcatcatttttgtagtgcagcatcacacatagatcagccaaactgcactgtaatctgcagagtgcaggttatcagatgttcagagatatgaactactatgttgtatgttcaccgtgttcaggagatcttcagattggtgagagttgttgtagaagtcgttgttcttccttcccgtcacgatctccagcaccatgacgccgaagctgaacgcgtctgacttgacggagtagttgccacgcatcatgtactcaggtgccatgtacccactgcaacagcaaagataatttgaagtcatgattagtcactacttaattactggatgactgaacaactactacagtttatgttgttactaactatgtgtcgacgacacggttcgtgacagcctgggtctgatcttgaccgaaaattctcgcgaggccaaagtctgagatcttggggttcatgttcgcgtctagcaagattttgctcgccttcagatcacggtggactaccttgagctgagagtcttcgtggaggtattgcaggcctcgagcgacgccgtttatgatcctgtacctcttttcccagtcaagcttctcgcgtttctcagtgtctgacaatgatcaaagagaaggtgttaattaatagatcaatgcgatgatatgacatcaatctttgcagagaaaacagaggagagaattggtaatgtagactcaattagtagtagtattgttaccaaagaggatcaggtcaaggctccggttaggaacgaactcgtagacaagcagcctctcgtgttgctccaggcagacgcctacaaagcttacgaggttcttgtgcctcagcttggcgaccagagcaagctcattcttcagctcttgaactccctgtgttgagctctttgacagcctcttcactgcgatttcgttgccgtctggaagaacaccctgtgaaaagattcaaaatatgctaattaaattagttttggtttgtaattcagagacttgttttttttttccctttttcagtaccttgtacaccgctccaaatccaccttcaccaagcttgttgctctctgcaaaatccccagttgcagctcgcagagtagaaatgtccatgagcatggagtctacgctgtcaacgtcatctgcttcagcgtaatagttggcatctgcataaacgtcagcatcacaacaattggataagTtttttttttttgcattgtcagctgaaatgattaaaatggagaattttgtaggacgtacttgtctgctttgcttttgttattactggacgcttcctcctccagacacagaagcaaacgacaaggtttacggctgctattatagggagcagtataataagaaccaggcgcggaaccttgtactttgtctctgcgaattgaccaattcacaaatttccaaggttatcatgttaaaacatgtcgaattgtatggacagattccgtactactgtactgtactactccccttatttcatactgcaagtcgtttaattttttcttagtcaaattcctttaaatttaacaaaatatatataaaaaatatattaatattttcaatatagaacaaacatattactaaaatatattcaatgttaatgttgctaaatttttctacaaacgtgatcaaacctaaataatcattttagataatagaaatgacttacaacctacaagtactcagaaaaaaattaaatgacttaaaatatagctttttcttggaaataatttttgccgggttttcttggaaataataaacgtgtagttgactaattgtgcaataatgtcagtaatgccgcccgaaagtaatacacacttcgactcacctcgtcccggcgtggccgctgaaggcgtcgcgttgaccggcggcgccggagacggcgccgatgtcgccggtagccgcaccatcgtcgtgccattgaggaaaggcttggtctcgatccggaagctgcacctgacggagagggtcctccctccgatgtcgtccttgtacgaccaaagctcctgcgccacgatcttggcgaggcagctccggcacctcgccggcgacaggtccggcgtgcactgcgccaggctgtacaccttggggagcgccgcgtcgaagtcggcctcgccggccgcgtaccgccgcgtcgagttgtacgccgcgtagtcggcggtggcgttgacgagcgccgccacgaggcggttgtaccgcccctgctccgacgtgaccttgttctcgttgttcaccgtgtacgcgtcgatcctcgccgggtcttcgccgccggcgccgccggagaggaagttgatggcggagtagctgaccatgcaccggtcgtagtaggtggcggcctccctggagttgccgcacgcgttgggcaggtcggcgaaggcctgggtgaggcagccgaggcaggagctggcgctgacgtcgccgcggcagagcgcggcggcggtgacctgctccgggacggcgccaacgtccacggcggtggcgtagaggtccggcgacgacgaggcgttaccggggagcgtggcggcgatgagctggaggttggcgaagaacctgctcttgggcgtgaaggtgccgaagtcctgcccgcacaccggccatggctcgccggcagagcggggcacgagcagcgcgacggcgacggcgacggacaggatgagacggcgatccatcggggtatttccggcgtgcgcaaagaggagctcaatccatgttcgttcccacggggatggactatagtagtgagtaatctccgtccaacacggcagagagacagagacgaccatacaagtcgtccctgattcttgaaccaactttgtcgcttaacaatggatacgattgcatccagctagtcgagatatagaaaatccatgtctccttgcacacactagtacaaacaagataccggtttagcagtgaatttgaatatagcgtagggagtatctctgctcaaagtttttgaattgagcaaattttatagtttttaagaggtgccatgagatacccaaacttttaagtacaaatttagtatctagacgtaccagagataccaaattttgggtcttccgaatggacgcgtgagttctagctgcctaactggtgcagccgcgcatgccccctatctcgcctctcctcagcgctaacaacgctgattagtgttgatgccattaattagcgatactgataattgttagtattagttttttatttaactctgatttggaaaacttttaaccagatttgaaactttcaacccagatttgaaaactttcaattcagataaaaaaatttcgacccagatatgaaaactttcaatccagatttgaaaactttcaactcagatttaaaaactttcgacttagatttgaaaactttcaagtcaagattttttaaaaacttttaactcagataatgaaaaaattcaagtcaagatttgaataccttcaatttatttttttcaaaaaaaacaacttagattttgaaactttcaaatctagatttgaaaaaattcaagtcaagatttgaaaactttcaactcggatttaaaaacttttaactaaatatttgaaaattttcaattcaaatttaaaaccttttgtctaaaaattcaaaacatttaactcaaatttgaaaactttcatatctaaattaaaaaaaattcaactcaattttttacctttaataatttttaactcaaattcaaaattttcaactaaaattgaagatgaaagatttcaacttctaaaattaaaaaatcacAaaaaaggaaaaaataaaaaaaaagcggacgttagattttttatgggaaaaatatacggacgtgggcactgtccgcacgcatacgcaccagcgctgggccttataggcctgaaacgcgtgccgccaacgcgcaagcgcgaattagctatcgcgccaaattttatattagaaaacgagatttgctccggtccaacaaaaagtatctcgagatgccggtacctcactgtaccaaatcatttccgatcgttggatctaactggacaggatggatattgttagattcaacgatcagaaacgatttggtatcacgaggtatcagtacctcgagatactttctgttagaccggagcaaatcttttagaaaacatagtgtctcccgatactttcctaaaaactgtaaaatcactcttttgaatttgtttgaaattagcaattaattgttgaaatcagggaaaacgtattcaaattaaaggtgaacacgctacattcgtgccaccaactgaccaacctcctctatcatcaattcttcctagcggagagaagtgcggccacaacgaaaccatgggaatggagtagacagtagtgcgcaggcggctatggaaaaggaggtgatggagtcgcaaaagccaaagaccaaagactagtcgatgacttcaccggccttgggattcacaggcttccagttgcaacttgcaaggcagcgataatcacgcccagtgtgccatgcaattcgcaataatccaagtattgcaacttgtaatcaagtgggcaatgttgcatcgcatcagtagcgaattagttatccacaaatttgcaaactttgcaagtttgtaggcgactggccaagtggccaggcatgctaattggactcgtcaaggtattcggctcaccactggtcatctatgaccgtgacatgtatgggcgtatggttatgaaaaagaaaagaaaaatcaagctccaaacttaccactagcaaattagcaatatggagctatatggattctgtttagcatagctctaactctaactttaacttttctgaaattgaagcccagtcaaacagtttcacctccattcaaaaataagagtggagccagctgaagcgcttttacaaaacgaactagacgggtgaagccggcttcatcctgtttcacaactccacttcagaatcaatttttagagttacatttagtagttgtagccctatcgaacaagtccatagaggataaaaatggattgcttccatttattcagttttaagaaaggattttaaacatatgctcaaagctcgtgttttacattcgtttgagaattccagggcaacatatatatataattattttacagttgactaaaaataattcgaattttcagtacaaaattatagtagaaaaaagtatatgataaataataaaacaagcaaaaaactacacttcacaatttatttgaaatcccatgatgacttttatgatccaaactagctagAaaaaaatgaatgtttatactaaaaattctttcagaactatttgccgggcgaatcacatgttaatgactagatttagctaaaccagatcaatcacagttatagccgtgttgcccacaggatggaggagaggaagctgattctctacccaaaaagaatgcaggttctgctggtggttgaagcttcatattttccttggtcaacatgaaaataatagatgacatgtgtggcctgtcatcggggtctggctggacacaaagtagtccaatgtggatgcatcgtaatgcttggctttcagagtacccattgagcgactggtaaatcatttttgtagcagtcccttttgtccagcaattccaaacctgttaggcatgttgacaaacttaagagattattactttcacgtaaaaatcatcaatatagcagtgttcacaatacactaaaagtagaaccatattggtgtgagctaaggttattaagtacttacatcactaacgagatcatgatcgtcagaatgccagttccttctcctcgtgataatttcgaggaccagcacaccaaagctaaaaatgtcgatcttggttgacacatttccatctattgcgtactctggtgccatataaccactgcagagggtaagcattacacttggaaacgtacatccaattaatatgtgctattaatgaaggtattattatacttatgagcttacaatgttccaacaactctagttgtcttagaatgagtatgaccttcgcctagcagccttgctaatccaaagtccgcaatctttggttccatatcatctccaactagaatgttgtttgattttagatcccggtgaatgatcctcaagcttgaatcctcgtgaagatacaatattcctttggcaattcccagaatgatgttgtactgttaatcccagtttagggcattccctctactgggatctattgggacaaatcttcaacttaatcataattacccacattcaatagaattcagaaagtggcaaagtgcaaattctggtcttagttatgtgatttgtttgctggaaatgctacagaacatatttagtgatactgaggatatttacttattgagtatatatgtttgtcatttgtgaacagatgaatgagaaggcaaattaccaaatagaaagttgtccaggctcctgttcttgaggtattcgtaaacaagcagagtctgctcctgatgcaagcaaaatccctgtagcctaacaaggttcttgtgctgaagctcagccaacaacttgatctcattgtatagctggtccaatccatgaccagttcctaaaagtttcttcactgctacttcttgtccatctgagagcactccctgaacatattgtttttcacagggagcaagcaatataatccatcttttgaaaagtaatgcacaatccatttgaaaattttctctttgtatttttgcgtgctaacttaccttgtatacagcaccaaaaccaccctcgccaagcttattattcggcgagaaattctcggttgcctcttgcagtgcagaaagatcaaaaatcatgcattgtgctctcgttattttcttcaatgctgttgccatatgacaagaattatgtgagggaacagtacatttttcagctactgaacggagattatatatgctactcacggtggacagcgtctgtaaccttggtcctcctcctgaagcgaacaaatgcgaaaactgaaagtatcaacaataccacaaccgacgaagcgacgccagcagcgattcctgctgtactaattttcttccctgcacacaccaaaacatggatttcaatttgcaaaaccttgatttcattgttaagtaggaaaaatgaagaacagcaggtcatacctgacccaggctctggagaaagaacaggagcttcggctgttggtggtggcgccgagacctgcagcatcgcccggcctcggtagaatggctgcacactatacatcagtctgcaccacaccgaattgacacgaacccagctaaggcttttgccgaggtacgcttgttttgcatagaagaggaggtccttaaggcaatcgttgcactgcgcgggcgtcaggtccggcacgcactgcgcgaacccgtagatgttggggtcgaactcctcctcacccgtgacgaaatacttcttggtggtcgagttccccgtcgtcgaggtcacggcgtggtcgaccatggcggcgaggatcttcgtgacggcggcgttgaaccagccaaccgccggcacatcgacgctcgccgaggcttgctcgggattccaactgtttgtcacgagctattagtttatctgattttttgcgagaaaagaatggaaggatggattgtgcgcacatcatctgtgagacctgccactgatccggactgaggaaatccatgaacctatagcgggagaagcgagctacgcaagcgtcctcgtacatggcgacgccgctgtttccaggacaatttttcttcccgtcgacgaacgctgccgcgacgcacgcgctgcaagcgaaggcgtccacgtcgccgcggcacagcgccatcgcaaagaccttgtcgggatccgcgccgatggtggagacagcgaagccggccggagccacggagacattggcggagagagccgcggcgaggacgttcaggttcgcctcgaaagtgctgttggccacgtacgtgttgccgactccttggtcgcagtcagcgatcccagccggcgtggccgacggcggcaagaggacgaggacaacggcgacgatgccatagccgacgagcatcgccgcagcagagaggggagatgctcacacaaaagatgtggacttgc
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| CDS seq | atgctcgtcggctatggcatcgtcgccgttgtcctcgtcctcttgccgccgtcggccacgccggctgggatcgctgactgcgaccaaggagtcggcaacacgtacgtggccaacagcactttcgaggcgaacctgaacgtcctcgccgcggctctctccgccaatgtctccgtggctccggccggcttcgctgtctccaccatcggcgcggatcccgacaaggtctttgcgatggcgctgtgccgcggcgacgtggacgccttcgcttgcagcgcgtgcgtcgcggcagcgttcgtcgacgggaagaaaaattgtcctggaaacagcggcgtcgccatgtacgaggacgcttgcgtagctcgcttctcccgctataggttcatggatttcctcagtccggatcagtggcaggtctcacagatgatttggaatcccgagcaagcctcggcgagcgtcgatgtgccggcggttggctggttcaacgccgccgtcacgaagatcctcgccgccatggtcgaccacgccgtgacctcgacgacggggaactcgaccaccaagaagtatttcgtcacgggtgaggaggagttcgaccccaacatctacgggttcgcgcagtgcgtgccggacctgacgcccgcgcagtgcaacgattgccttaaggacctcctcttctatgcaaaacaagcgtacctcggcaaaagccttagctgggttcgtgtcaattcggtgtggtgcagactgatgtatagtgtgcagccattctaccgaggccgggcgatgctgcaggtctcggcgccaccaccaacagccgaagctcctgttctttctccagagcctgggtcagggaagaaaattagtacagcaggaatcgctgctggcgtcgcttcgtcggttgtggtattgttgatactttcagttttcgcatttgttcgcttcaggaggaggaccaaggttacagacgctgtccacccattgaagaaaataacgagagcacaatgcatgatttttgatctttctgcactgcaagaggcaaccgagaatttctcgccgaataataagcttggcgagggtggttttggtgctgtatacaagggagtgctctcagatggacaagaagtagcagtgaagaaacttttaggaactggtcatggattggaccagctatacaatgagatcaagttgttggctgagcttcagcacaagaaccttgttaggctacagggattttgcttgcatcaggagcagactctgcttgtttacgaatacctcaagaacaggagcctggacaactttctatttggaatattgtatcttcacgaggattcaagcttgaggatcattcaccgggatctaaaatcaaacaacattctagttggagatgatatggaaccaaagattgcggactttggattagcaaggctgctaggcgaaggtcatactcattctaagacaactagagttgttggaacatttggttatatggcaccagagtacgcaatagatggaaatgtgtcaaccaagatcgacatttttagctttggtgtgctggtcctcgaaattatcacgaggagaaggaactggcattctgacgatcatgatctcgtttggaattgctggacaaaagggactgctacaaaaatgatttaccagtcgctcaatgggtactctgaaagccaagcattacgatgcatccacattggactactttgtgtccagccagaccccgatgacaggccacacatgtcatctattattttcatgttgaccaaggaaaatatgaagcttcaaccaccagcagaacctgcattctttttggagaatcagcttcctctcctccatcctgtgggcaacacggctataactgtgattgatctgattactcactactatagtccatccccgtgggaacgaacatggattgagctcctctttgcgcacgccggaaataccccgatggatcgccgtctcatcctgtccgtcgccgtcgccgtcgcgctgctcgtgccccgctctgccggcgagccatggccggtgtgcgggcaggacttcggcaccttcacgcccaagagcaggttcttcgccaacctccagctcatcgccgccacgctccccggtaacgcctcgtcgtcgccggacctctacgccaccgccgtggacgttggcgccgtcccggagcaggtcaccgccgccgcgctctgccgcggcgacgtcagcgccagctcctgcctcggctgcctcacccaggccttcgccgacctgcccaacgcgtgcggcaactccagggaggccgccacctactacgaccggtgcatggtcagctactccgccatcaacttcctctccggcggcgccggcggcgaagacccggcgaggatcgacgcgtacacggtgaacaacgagaacaaggtcacgtcggagcaggggcggtacaaccgcctcgtggcggcgctcgtcaacgccaccgccgactacgcggcgtacaactcgacgcggcggtacgcggccggcgaggccgacttcgacgcggcgctccccaaggtgtacagcctggcgcagtgcacgccggacctgtcgccggcgaggtgccggagctgcctcgccaagatcgtggcgcaggagctttggtcgtacaaggacgacatcggagggaggaccctctccgtcaggtgcagcttccggatcgagaccaagcctttcctcaatggcacgacgatggtgcggctaccggcgacatcggcgccgtctccggcgccgccggtcaacgcgacgccttcagcggccacgccgggacgagagacaaagtacaaggttccgcgcctggttcttattatactgctccctataatagcagccgtaaaccttgtcgtttgcttctgtgtctggaggaggaagcgtccagtaataacaaaagcaaagcagacaaatgccaactattacgctgaagcagatgacgttgacagcgtagactccatgctcatggacatttctactctgcgagctgcaactggggattttgcagagagcaacaagcttggtgaaggtggatttggagcggtgtacaagggtgttcttccagacggcaacgaaatcgcagtgaagaggctgtcaaagagctcaacacagggagttcaagagctgaagaatgagcttgctctggtcgccaagctgaggcacaagaacctcgtaagctttgtaggcgtctgcctggagcaacacgagaggctgcttgtctacgatgggtacatggcacctgagtacatgatgcgtggcaactactccgtcaagtcagacgcgttcagcttcggcgtcatggtgctggagatcgtgacgggaaggaagaacaacgacttctacaacaactctcaccaatctgaagatctcctgaacacgatatgggagcgttggatggccggaaccgtggatgagatggtagacccggccatgagcaggtacgtctcggcgagcgacgtgcggaagtgcgtccacgtagcgctcctgtgcgtgcaggaaaacccCgcggatcggccggtgatgtcgtcggtggtgatgatgctcgacagcgagacggtctccctccaggtgccctccaagccggcgttcttcgccaggaacggcggcgctaaacccggcgtcgcgtccgacgagtcgaccgcgtcagtgtag
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| Protein seq | MLVGYGIVAVVLVLLPPSATPAGIADCDQGVGNTYVANSTFEANLNVLAAALSANVSVAPAGFAVSTIGADPDKVFAMALCRGDVDAFACSACVAAAFVDGKKNCPGNSGVAMYEDACVARFSRYRFMDFLSPDQWQVSQMIWNPEQASASVDVPAVGWFNAAVTKILAAMVDHAVTSTTGNSTTKKYFVTGEEEFDPNIYGFAQCVPDLTPAQCNDCLKDLLFYAKQAYLGKSLSWVRVNSVWCRLMYSVQPFYRGRAMLQVSAPPPTAEAPVLSPEPGSGKKISTAGIAAGVASSVVVLLILSVFAFVRFRRRTKVTDAVHPLKKITRAQCMIFDLSALQEATENFSPNNKLGEGGFGAVYKGVLSDGQEVAVKKLLGTGHGLDQLYNEIKLLAELQHKNLVRLQGFCLHQEQTLLVYEYLKNRSLDNFLFGILYLHEDSSLRIIHRDLKSNNILVGDDMEPKIADFGLARLLGEGHTHSKTTRVVGTFGYMAPEYAIDGNVSTKIDIFSFGVLVLEIITRRRNWHSDDHDLVWNCWTKGTATKMIYQSLNGYSESQALRCIHIGLLCVQPDPDDRPHMSSIIFMLTKENMKLQPPAEPAFFLENQLPLLHPVGNTAITVIDLITHYYSPSPWERTWIELLFAHAGNTPMDRRLILSVAVAVALLVPRSAGEPWPVCGQDFGTFTPKSRFFANLQLIAATLPGNASSSPDLYATAVDVGAVPEQVTAAALCRGDVSASSCLGCLTQAFADLPNACGNSREAATYYDRCMVSYSAINFLSGGAGGEDPARIDAYTVNNENKVTSEQGRYNRLVAALVNATADYAAYNSTRRYAAGEADFDAALPKVYSLAQCTPDLSPARCRSCLAKIVAQELWSYKDDIGGRTLSVRCSFRIETKPFLNGTTMVRLPATSAPSPAPPVNATPSAATPGRETKYKVPRLVLIILLPIIAAVNLVVCFCVWRRKRPVITKAKQTNANYYAEADDVDSVDSMLMDISTLRAATGDFAESNKLGEGGFGAVYKGVLPDGNEIAVKRLSKSSTQGVQELKNELALVAKLRHKNLVSFVGVCLEQHERLLVYDGYMAPEYMMRGNYSVKSDAFSFGVMVLEIVTGRKNNDFYNNSHQSEDLLNTIWERWMAGTVDEMVDPAMSRYVSASDVRKCVHVALLCVQENPADRPVMSSVVMMLDSETVSLQVPSKPAFFARNGGAKPGVASDESTASV |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0017660 | OsLima_07g0017660.01 | Chr07 | 21943360 | 21951714 | - | NAM | ||
| CDS seq | atgctcgtcggctatggcatcgtcgccgttgtcctcgtcctcttgccgccgtcggccacgccggctgggatcgctgactgcgaccaaggagtcggcaacacgtacgtggccaacagcactttcgaggcgaacctgaacgtcctcgccgcggctctctccgccaatgtctccgtggctccggccggcttcgctgtctccaccatcggcgcggatcccgacaaggtctttgcgatggcgctgtgccgcggcgacgtggacgccttcgcttgcagcgcgtgcgtcgcggcagcgttcgtcgacgggaagaaaaattgtcctggaaacagcggcgtcgccatgtacgaggacgcttgcgtagctcgcttctcccgctataggttcatggatttcctcagtccggatcagtggcaggtctcacagatgatttggaatcccgagcaagcctcggcgagcgtcgatgtgccggcggttggctggttcaacgccgccgtcacgaagatcctcgccgccatggtcgaccacgccgtgacctcgacgacggggaactcgaccaccaagaagtatttcgtcacgggtgaggaggagttcgaccccaacatctacgggttcgcgcagtgcgtgccggacctgacgcccgcgcagtgcaacgattgccttaaggacctcctcttctatgcaaaacaagcgtacctcggcaaaagccttagctgggttcgtgtcaattcggtgtggtgcagactgatgtatagtgtgcagccattctaccgaggccgggcgatgctgcaggtctcggcgccaccaccaacagccgaagctcctgttctttctccagagcctgggtcagggaagaaaattagtacagcaggaatcgctgctggcgtcgcttcgtcggttgtggtattgttgatactttcagttttcgcatttgttcgcttcaggaggaggaccaaggttacagacgctgtccacccattgaagaaaataacgagagcacaatgcatgatttttgatctttctgcactgcaagaggcaaccgagaatttctcgccgaataataagcttggcgagggtggttttggtgctgtatacaagggagtgctctcagatggacaagaagtagcagtgaagaaacttttaggaactggtcatggattggaccagctatacaatgagatcaagttgttggctgagcttcagcacaagaaccttgttaggctacagggattttgcttgcatcaggagcagactctgcttgtttacgaatacctcaagaacaggagcctggacaactttctatttggaatattgtatcttcacgaggattcaagcttgaggatcattcaccgggatctaaaatcaaacaacattctagttggagatgatatggaaccaaagattgcggactttggattagcaaggctgctaggcgaaggtcatactcattctaagacaactagagttgttggaacatttggttatatggcaccagagtacgcaatagatggaaatgtgtcaaccaagatcgacatttttagctttggtgtgctggtcctcgaaattatcacgaggagaaggaactggcattctgacgatcatgatctcgtttggaattgctggacaaaagggactgctacaaaaatgatttaccagtcgctcaatgggtactctgaaagccaagcattacgatgcatccacattggactactttgtgtccagccagaccccgatgacaggccacacatgtcatctattattttcatgttgaccaaggaaaatatgaagcttcaaccaccagcagaacctgcattctttttggagaatcagcttcctctcctccatcctgtgggcaacacggctataactgtgattgatctgattactcactactatagtccatccccgtgggaacgaacatggattgagctcctctttgcgcacgccggaaataccccgatggatcgccgtctcatcctgtccgtcgccgtcgccgtcgcgctgctcgtgccccgctctgccggcgagccatggccggtgtgcgggcaggacttcggcaccttcacgcccaagagcaggttcttcgccaacctccagctcatcgccgccacgctccccggtaacgcctcgtcgtcgccggacctctacgccaccgccgtggacgttggcgccgtcccggagcaggtcaccgccgccgcgctctgccgcggcgacgtcagcgccagctcctgcctcggctgcctcacccaggccttcgccgacctgcccaacgcgtgcggcaactccagggaggccgccacctactacgaccggtgcatggtcagctactccgccatcaacttcctctccggcggcgccggcggcgaagacccggcgaggatcgacgcgtacacggtgaacaacgagaacaaggtcacgtcggagcaggggcggtacaaccgcctcgtggcggcgctcgtcaacgccaccgccgactacgcggcgtacaactcgacgcggcggtacgcggccggcgaggccgacttcgacgcggcgctccccaaggtgtacagcctggcgcagtgcacgccggacctgtcgccggcgaggtgccggagctgcctcgccaagatcgtggcgcaggagctttggtcgtacaaggacgacatcggagggaggaccctctccgtcaggtgcagcttccggatcgagaccaagcctttcctcaatggcacgacgatggtgcggctaccggcgacatcggcgccgtctccggcgccgccggtcaacgcgacgccttcagcggccacgccgggacgagagacaaagtacaaggttccgcgcctggttcttattatactgctccctataatagcagccgtaaaccttgtcgtttgcttctgtgtctggaggaggaagcgtccagtaataacaaaagcaaagcagacaaatgccaactattacgctgaagcagatgacgttgacagcgtagactccatgctcatggacatttctactctgcgagctgcaactggggattttgcagagagcaacaagcttggtgaaggtggatttggagcggtgtacaagggtgttcttccagacggcaacgaaatcgcagtgaagaggctgtcaaagagctcaacacagggagttcaagagctgaagaatgagcttgctctggtcgccaagctgaggcacaagaacctcgtaagctttgtaggcgtctgcctggagcaacacgagaggctgcttgtctacgatgggtacatggcacctgagtacatgatgcgtggcaactactccgtcaagtcagacgcgttcagcttcggcgtcatggtgctggagatcgtgacgggaaggaagaacaacgacttctacaacaactctcaccaatctgaagatctcctgaacacgatatgggagcgttggatggccggaaccgtggatgagatggtagacccggccatgagcaggtacgtctcggcgagcgacgtgcggaagtgcgtccacgtagcgctcctgtgcgtgcaggaaaacccCgcggatcggccggtgatgtcgtcggtggtgatgatgctcgacagcgagacggtctccctccaggtgccctccaagccggcgttcttcgccaggaacggcggcgctaaacccggcgtcgcgtccgacgagtcgaccgcgtcagtgtag
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| Protein seq | MLVGYGIVAVVLVLLPPSATPAGIADCDQGVGNTYVANSTFEANLNVLAAALSANVSVAPAGFAVSTIGADPDKVFAMALCRGDVDAFACSACVAAAFVDGKKNCPGNSGVAMYEDACVARFSRYRFMDFLSPDQWQVSQMIWNPEQASASVDVPAVGWFNAAVTKILAAMVDHAVTSTTGNSTTKKYFVTGEEEFDPNIYGFAQCVPDLTPAQCNDCLKDLLFYAKQAYLGKSLSWVRVNSVWCRLMYSVQPFYRGRAMLQVSAPPPTAEAPVLSPEPGSGKKISTAGIAAGVASSVVVLLILSVFAFVRFRRRTKVTDAVHPLKKITRAQCMIFDLSALQEATENFSPNNKLGEGGFGAVYKGVLSDGQEVAVKKLLGTGHGLDQLYNEIKLLAELQHKNLVRLQGFCLHQEQTLLVYEYLKNRSLDNFLFGILYLHEDSSLRIIHRDLKSNNILVGDDMEPKIADFGLARLLGEGHTHSKTTRVVGTFGYMAPEYAIDGNVSTKIDIFSFGVLVLEIITRRRNWHSDDHDLVWNCWTKGTATKMIYQSLNGYSESQALRCIHIGLLCVQPDPDDRPHMSSIIFMLTKENMKLQPPAEPAFFLENQLPLLHPVGNTAITVIDLITHYYSPSPWERTWIELLFAHAGNTPMDRRLILSVAVAVALLVPRSAGEPWPVCGQDFGTFTPKSRFFANLQLIAATLPGNASSSPDLYATAVDVGAVPEQVTAAALCRGDVSASSCLGCLTQAFADLPNACGNSREAATYYDRCMVSYSAINFLSGGAGGEDPARIDAYTVNNENKVTSEQGRYNRLVAALVNATADYAAYNSTRRYAAGEADFDAALPKVYSLAQCTPDLSPARCRSCLAKIVAQELWSYKDDIGGRTLSVRCSFRIETKPFLNGTTMVRLPATSAPSPAPPVNATPSAATPGRETKYKVPRLVLIILLPIIAAVNLVVCFCVWRRKRPVITKAKQTNANYYAEADDVDSVDSMLMDISTLRAATGDFAESNKLGEGGFGAVYKGVLPDGNEIAVKRLSKSSTQGVQELKNELALVAKLRHKNLVSFVGVCLEQHERLLVYDGYMAPEYMMRGNYSVKSDAFSFGVMVLEIVTGRKNNDFYNNSHQSEDLLNTIWERWMAGTVDEMVDPAMSRYVSASDVRKCVHVALLCVQENPADRPVMSSVVMMLDSETVSLQVPSKPAFFARNGGAKPGVASDESTASV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0017660 | OsLima_07g0017660.02 | Chr07 | 21943159 | 21946432 | - | IsoSeq | ||
| CDS seq | ggacgacttgtatggtcgtctctgtctctctgccgtgttggacggagattactcactactatagtccatccccgtgggaacgaacatggattgagctcctctttgcgcacgccggaaataccccgatggatcgccgtctcatcctgtccgtcgccgtcgccgtcgcgctgctcgtgccccgctctgccggcgagccatggccggtgtgcgggcaggacttcggcaccttcacgcccaagagcaggttcttcgccaacctccagctcatcgccgccacgctccccggtaacgcctcgtcgtcgccggacctctacgccaccgccgtggacgttggcgccgtcccggagcaggtcaccgccgccgcgctctgccgcggcgacgtcagcgccagctcctgcctcggctgcctcacccaggccttcgccgacctgcccaacgcgtgcggcaactccagggaggccgccacctactacgaccggtgcatggtcagctactccgccatcaacttcctctccggcggcgccggcggcgaagacccggcgaggatcgacgcgtaca
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| Protein seq | GRLVWSSLSLCRVGRRLLTTIVHPRGNEHGLSSSLRTPEIPRWIAVSSCPSPSPSRCSCPALPASHGRCAGRTSAPSRPRAGSSPTSSSSPPRSPVTPRRRRTSTPPPWTLAPSRSRSPPPRSAAATSAPAPASAASPRPSPTCPTRAATPGRPPPTTTGAWSATPPSTSSPAAPAAKTRRGSTRT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.035090 | 0.231309 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0538300 | RBH | 0.204647 | 0.283064 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35380 | RBH | 0.147085 | 0.170140 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0538300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018040 | RBH | 0.125146 | 29.172636 | 1.094711 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017950 | RBH | 0.0 | 6.008116 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017920 | RBH | 0.222090 | 7.717887 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017830 | RBH | 0.0 | 0.312593 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017920 | RBH | 0.0 | 11.058003 | 0.959032 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0344400 | RBH | 0.389236 | 36.645977 | 0.3087605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018420 | RBH | 0.000000 | 1.194219 | 0.053960 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0359000 | RBH | 1.017192 | 49.594669 | 0.1131125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017940 | SBH | 0.026354 | 0.135489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017820 | RBH | 0.0 | 35.796112 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017750 | RBH | 0.0 | 21.090357 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018040 | RBH | 0.045699 | 0.213664 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017830 | RBH | 0.000000 | 2.189205 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017810 | RBH | 0.057551 | 0.235860 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017670 | RBH | 0.000000 | 26.036587 | 0.701737 |
