Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0015720 | OGI:07054050 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:19884964-19888540 | ||||||||
| Gene Symbol | GLW7, OsSPL13, SPL13 | ||||||||||
| DNA seq | atactctcttgaggcaccttagaaatatttttgcattctatggattgtacatatctatactacagttctactcctattcggctttcgattttctccaggttttgcgcgcaagagaaaattttggaaaaggtcagacgccttcactaagtgaagaccggtcaaaaccgcaatttcccattcttgttctttgatgaaacacctaatacgatcaaactgaatgtttactacagtacgaaaaattctcacagaacagccctgcagaaaacggtgactcaaacagcatatattaccactgccatcccggcacaacagcatacataggcacactgcagcctacacaagtttctgttgggcaaaggcaatagtacaattacacatcaaacacaccctcacagagagagagagagagagagagagagagagaatccctagaacacctgcttaatcaacaggttacaattagcttagggttgtggcagagaacatatatatagcacatttatgcctctccagcatagcactgcgtatatctagcagcagtagagggagatgatcacactgccagttaatcagcagcagcaaagcacaccggatagatagattcagggatagataaatagatagatagatagatttgattgatttgaggaagaagggacgtaggtggtggatatatataggtagatagatcgatgtagacatgtagtagtagtagtggcacgaacacacacacactcacactagcatggctgcatgacagaagagagggagcatgcttaggtaggtttatctgatctggaacggcgggttcccggtgccctggtggctccggccggcgtcctggtcggcgtggcggcagttctcgccgtgcgccgtgtccgccgcgctcttccggcgccgctcgttgtgcccggccagccgccgccggcagctcctcttcgcgtcgtcgaactccgtcagctcatggaacctgcacatcaacacatacacattacaggacaagatgatgatgaagcttcatcacaagcagaaacacacaaaagacctgaaggagctatctattggaagcatgtgtgtgagggcagtgactatcatgcataatgcactcttgtcaaatcggcgaaaagatgagaggtacacaaatgcattcaacgcgaaccaccgaaagctatagcatttgcatccggacagacaagggtttttactgccggaatctgctgctgctgctgtgccagcagtgcatgtgatgtgcatgcagagagagaaaaagcagaggacaagaaaaagaaagcttgacgcgtattatatgcgtactgagaatgatcaaaacctatttaaataccaaaagctgaagaaaacattccttaatcctacttgtttcagatcaaaaaaacacctgaggagtagagaacaagtgcttgtttctttcatctgttccttaactatccttttcgtcagaaatttaaaaaactgtgtttcagatatgatgataatctcactagtgttctaccactgaagcttgcagctgaagaggttctacaaacttcatcctttgcaagcaattaaagatgtactcctacatctactcgaaaggcagatggtgtcagggtgtcattattcattcttgctgaaggtaatgagcatgagcagcatgatcattgtccctgctaggacacactaaaccaaaaggaccacaaagtgttttgtttgatccacttaagttgctctcacttatgagcaatcaataactgctgtagcaagtctttatcaaacccataaacagcaccaggacagcatgaacaaggccaggccagcgaccagctgctctggcaaaaagaactggtccaatagcgtgataatatttattaactttttacttaagctagccagcagcttcctatgttcatgtgatgcacatgaatctgaaagggtcagcaatatcaaagaccactaaaaaagaataaaacctaacagtggaatgactcatctaacctgggaaatgccaacatggcacctgtttggaacatgcaactgcagtgtcaaatgttcccaagtgataaaacagagagagatagcacaagaaacataaagcatcagaaaatagcaaccggacgaggttttggccgacagtgaaccaatcttggactgacaaaaatcttcccacggcatcaaacacaccacacacaaacatagatagcagcaaagatctgcttgtttgcagctaaaattgggaccaaatcaaggagctgccttggagatgcagagcaaagttggatctggtcaagctctctgatctctcgccaccgacaaaagatattagagtagtaaagttcatggccactactaccctttccaagcaagcaagaaatggagtaatggacaatgatgtccactatggtgtgtgcctctatatggtgcataagcaaagtgaaagaatcctgtgaatgtgatgaaaacctagtttccttatcctacttttcaccaccctgctggaacaaacggatgcatagttacagtgacaagacccaagaacagcgacttgcactaatgcaacTttttttttttgaggagagaaatctgtaacactggcctaaaatgaccattaatcacagcctcagtattagaccttttcaggcttacagcctcaaaaagcagcacccaaggacactaatttgcacttaagcacaaggaaaagaatcagagcaaacatggagaatataatattggaattcttttttgcttggaaattagaaggatgtagcccatgatccaagaacagttcatcatatatgttgcttagaccctgaaagccatccatgatccaccatcaagacgaaacgattcttaatcttagaaaagagatatttcacttttttattttttattttttgggggtgagggggagtcgcaggaggaagaagttttgggtatgaacatggccgtaccggctgcattgctggcagaagcgctggcggaggccagcgacgaggacgacgggctccttggagtgcgtctggcacaccttgtgcctccggttgtaccgcccagcctcgctgaggtcgacgccgcacctctccacctggcacctcggcccgccgccgccgcccgacggggcgccaccgccggcacggcccgcgcccctcctcgccgccgcggccaccgaggaggaggaggagctagaagacgcgccagcagcaacagcagcggacgaggaggaaccgccgccgccgccgcctgccacgggcgccagcgacgacgccaccagcctgggcttcttgtcctcctccatgggggacggcagcgccgccccgccgtcccccgcggccgccgcggcggcgagcgcggccatggacgcggccgaggaggaggacgacgaggagaagttcttgcgggccttgtccttgcggtccatgggcggtggcgcgcctgatcgacgacgagctagtgctactgtgtgctgtgtgctagcctcctaggggaggtggaagcggtggctggaggagggtggagagagctagagctagctcgagctcgagctcatgagtggaagtggaaggcggaggaggaggaggagaag
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| CDS seq | atggaccgcaaggacaaggcccgcaagaacttctcctcgtcgtcctcctcctcggccgcgtccatggccgcgctcgccgccgcggcggccgcgggggacggcggggcggcgctgccgtcccccatggaggaggacaagaagcccaggctggtggcgtcgtcgctggcgcccgtggcaggcggcggcggcggcggttcctcctcgtccgctgctgttgctgctggcgcgtcttctagctcctcctcctcctcggtggccgcggcggcgaggaggggcgcgggccgtgccggcggtggcgccccgtcgggcggcggcggcgggccgaggtgccaggtggagaggtgcggcgtcgacctcagcgaggctgggcggtacaaccggaggcacaaggtgtgccagacgcactccaaggagcccgtcgtcctcgtcgctggcctccgccagcgcttctgccagcaatgcagccggttccatgagctgacggagttcgacgacgcgaagaggagctgccggcggcggctggccgggcacaacgagcggcgccggaagagcgcggcggacacggcgcacggcgagaactgccgccacgccgaccaggacgccggccggagccaccagggcaccgggaacccgccgttccagatcagataa
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| Protein seq | MDRKDKARKNFSSSSSSSAASMAALAAAAAAGDGGAALPSPMEEDKKPRLVASSLAPVAGGGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAADTAHGENCRHADQDAGRSHQGTGNPPFQIR |
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| Function | Squamosa promoter-binding-like protein 13 [UniProtKB/Swiss-Prot:Q6Z461] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0015720 | OsLima_07g0015720.01 | Chr07 | 19884964 | 19888540 | - | NAM | ||
| CDS seq | atggaccgcaaggacaaggcccgcaagaacttctcctcgtcgtcctcctcctcggccgcgtccatggccgcgctcgccgccgcggcggccgcgggggacggcggggcggcgctgccgtcccccatggaggaggacaagaagcccaggctggtggcgtcgtcgctggcgcccgtggcaggcggcggcggcggcggttcctcctcgtccgctgctgttgctgctggcgcgtcttctagctcctcctcctcctcggtggccgcggcggcgaggaggggcgcgggccgtgccggcggtggcgccccgtcgggcggcggcggcgggccgaggtgccaggtggagaggtgcggcgtcgacctcagcgaggctgggcggtacaaccggaggcacaaggtgtgccagacgcactccaaggagcccgtcgtcctcgtcgctggcctccgccagcgcttctgccagcaatgcagccggttccatgagctgacggagttcgacgacgcgaagaggagctgccggcggcggctggccgggcacaacgagcggcgccggaagagcgcggcggacacggcgcacggcgagaactgccgccacgccgaccaggacgccggccggagccaccagggcaccgggaacccgccgttccagatcagataa
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| Protein seq | MDRKDKARKNFSSSSSSSAASMAALAAAAAAGDGGAALPSPMEEDKKPRLVASSLAPVAGGGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAADTAHGENCRHADQDAGRSHQGTGNPPFQIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.051713 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0505200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g32170 | RBH | 0.000000 | 0.087922 | 0.703663 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0505200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0016090 | RBH | 0.0 | 0.0 | 16.653685 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0016020 | RBH | 0.000000 | 0.784968 | 4.517964 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015980 | RBH | 0.476477 | 0.0 | 10.332158 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015910 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015970 | RBH | 0.0 | 0.0 | 19.308523 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0317000 | RBH | 0.690201 | 0.4600935 | 7.4338755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016450 | RBH | 0.120944 | 0.0 | 1.242907 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0330000 | RBH | 0.9737425 | 0.175582 | 56.304188 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016140 | RBH | 0.0 | 0.0 | 0.595439 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015880 | RBH | 0.0 | 0.0 | 8.936843 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015790 | RBH | 0.0 | 0.0 | 6.599609 |
