Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0015230 | OGI:07052970 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:19380796-19384723 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcctgacgacccctcctctttagtttgctcttgcccaccgctgccgcctccggctccggctccggcgatccccatccatcccgcgagcgagcagggcgccgtcattcatcctgctgcatcctggtgagcacatcctccgccaccgccgatccccatccaatcgcgcgtgcgagcgagcgagcgagctgggtcgccgtcgctcgtcctgctgcttccgccgcatccgatacgcacatcctctttcccatctctctctctctacccacgcactttttttctcgaatttgcgttaaccctagcttctgctctagaaatttgccttaaccttaatactagtaactgtttgatggttcctaagaaggtttggggggttcaactgaacccccaatgtcccatgttagatccgccactgtcagtagagttggaaatttgcactgggtgttgcaaagcctaggaagctttgttttataaactgtttccgcttatcagtttatttaccttcgtatgtgatgatgacgcgcagagtgttctgttagtggccaccattcttttgtcaaggatatgtatgtaaacagggcatgatttatttcctctattttctgcctgactagattatttggggccaatggaagaggaggagtacaatacggaatcgtctaatgaggaagacatgcaagaagatgatggtgagaaacaaggaaatgttgccgagggtgatatcttcaagccggttgatatagatcccgcgtttgtaccaaaagtagggatggtgtttgagtcggaggaagacgcctttcagttctatgtgtcttacggctgccgctctggttttggtatcacaagaagatcgaacaataccttcgatggtttccgctatcgctctacattcatatgctctaaaggagggcagtctagactgaggtctggcgcgacgagatccgcaagaaaacgaggcacaaagactggatgcaaggctaagatgattgttaaggatgctcattttcaaaaccgctgggaagttattgttctagagttggaacataaccatccgttggatcctagcttacttaaatttaagaagcagctaaagaactctcctttccttcagaatccacctcttatgcttgaagcaccagacagtagctcagctgctgccctttctagcagaggcggtgatagcggcatacctttgtctacccagattgaattcaggaccaagatagatagaaataggaaactgaagcttgctgaaggtgatctagatgccttattgagttttctcaacaaaatgcaagaccaaaatccgtacttcttttacagtttggatatgaatgagcaaggacaactaaggaatgtattttgggctgatgccaaatcacgctcttcttacaattactttggtgatgttgttgctattaatgtcagaaactttagcgaccaatatgaaatacagtttgtgtcatttgtgggcactaaccaccatgctcagcaagtattactagggtgtggtcttcttgctggtagatctcttggagcttacgtctggctttttgatacatgggtaagatgtatgaacagcacgccaccaccttcagtaattacaaactactgtcatgatgttgcaatagctgttaaaaaggttttccctaatgcacattaccgcttttgccttctcgacatcttaaatgagcttcctgaaaagttggaggaaacagaaaagaaggatgaaatagtttctgcatttagctcactagcctttgattccattaccatgcctgattttgacaaagattggcaagaaatggtcgaacaatttcatctagagggaaacgaatggttgtccaaactatttgaggtcaggacacagtgggctcctgtttatgtgaaggattccttttgggcaggaatgtctattacagaaagaagtgatagtgcatctgactattttgatggctggttgatgccagatacctctgtaaaaatgtttgttgagcagtatgagtctgctgtgaaagttaagttagaaaaggaaaactatgaggatttacggtcatctcagatgaggccaccggtgatgactggtgtatctgtggaggagcaagcagcaaagatgtacacattggagatatttcagaagttcttagatgaaatcgggcattcttttcattgcaattatagtatacttgaccggaatgaatcagtggttacatacatagtttcagatcacattgatgaaacaaagaaggtggactacaaagttgcttatgataatgtcgaagatgacatattgtgtctctgccgattgttccaattcaaaggtatattatgcaggcatgctcttactgtactgaggcaggagtttgtaccaatgattccaccaaaatacatcatccatcgctggtgcaaggattgtaaacaaacttgttcttccatgtcacagcctgtatcattaagtaatcaggaaacaggaggctatgatgatctctacaaactcactcaccaatatttcacagaagtagtggaatttggttctgtgaactcagaatcaaagggctatgctttatcaatcatgagggagataagggataaagtgatttcttatgagaagtcactaagagatcagagggttgatagtcatgtttcaaccgcaaattttgcatacaatccagtgaatgaggattttaatgatgacactttgcccatttctcttagtacaaaaggatgggatgttgtacaaggtcagtcaaaacgttcccgcaagaagaaactggcaaccccgaatgttcttgacaccttgaagaagaaaactaaaagagcatataacaagagaaggaatgccatggcaaataccttaaacacggcagtcaccacaaccgaaagcataactgacgccacaaatgtatgtattgtaataagatccgctgagttagttgaaattttttccttgtggtcgtctaatattgaagtttttctcattaggtgcagcataatcaagttaatgagggatggccattgacatctactggtgcacacgaaaccttcccttatggagtaagatcaaatatacacatcccatgtttttctccttatctgttctttctgtattggtggatctgatgtagataaaacccttctcactttttttttttcaaaattgtgtttgctttctaggtggagactatttcattcgatttgtctcaatacaacagtgcacctagcttccactggcctgaaagcagtagcaggtctcagcttcagtgagatgaggtgaaaaatgcaatggtccatgcgttgagaatattctaagtttgacagacttgcaagatgggcaaagttattaattaccttgtttcatgctggagggttcctgaatcctgaccatctgaggaatgtgagaaaaggctcaacctggcgaaaaccagtaataacaaccggcttttaacggattcggtctatattggttgtcccctgatattttagatatatgtaatggctgagatgtacataatcatttcccctttttctcatcctcagataaattgtagcttccactaggtaatgtgtaatgtcaatcctgatcattcacgtggtcacgtcttaaataattagactgaatgttactcctgtaaaccccatagtcatggaatgtacattgctcagaactatgcccttctgcagacttgagttttttctggcaactccaccaaagatgctgacttgttaatttgctgcaaaactgaagtctttggatctggcagaaactgttttttttttaaatcttaatctttttgtttcttccagtgacatgtaatgtaagtccgtttaaccagttctatttcacaagcttccccagctaaccatgtactgcaatatatgtatgcgattgtcgatttgtaatggtattatatatttcttctattttctgtc
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| CDS seq | atggaagaggaggagtacaatacggaatcgtctaatgaggaagacatgcaagaagatgatggtgagaaacaaggaaatgttgccgagggtgatatcttcaagccggttgatatagatcccgcgtttgtaccaaaagtagggatggtgtttgagtcggaggaagacgcctttcagttctatgtgtcttacggctgccgctctggttttggtatcacaagaagatcgaacaataccttcgatggtttccgctatcgctctacattcatatgctctaaaggagggcagtctagactgaggtctggcgcgacgagatccgcaagaaaacgaggcacaaagactggatgcaaggctaagatgattgttaaggatgctcattttcaaaaccgctgggaagttattgttctagagttggaacataaccatccgttggatcctagcttacttaaatttaagaagcagctaaagaactctcctttccttcagaatccacctcttatgcttgaagcaccagacagtagctcagctgctgccctttctagcagaggcgatcacattgatgaaacaaagaaggtggactacaaagttgcttatgataatgtcgaagatgacatattgtgtctctgccgattgttccaattcaaagaagtagtggaatttggttctgtgaactcagaatcaaagggctatgctttatcaatcatgagggagataagggataaagtgatttcttatgagaagtcactaagagatcagagggttgatagtcatgtttcaaccgcaaattttgcatacaatccagtgaatgaggattttaatgatgacactttgcccatttctcttagtacaaaaggatgggatgttgtacaaggtcagtcaaaacgttcccgcaagaagaaactggcaaccccgaatgttcttgacaccttgaagaagaaaactaaaagagcatataacaagagaaggaatgccatggcaaataccttaaacacggcagtcaccacaaccgaaagcataactgacgccacaaatcataatcaagttaatgagggatggccattgacatctactggtgcacacgaaaccttcccttatggagtggagactatttcattcgatttgtctcaatacaacagtgcacctagcttccactggcctgaaagcagtagcaggtctcagcttcagtga
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| Protein seq | MEEEEYNTESSNEEDMQEDDGEKQGNVAEGDIFKPVDIDPAFVPKVGMVFESEEDAFQFYVSYGCRSGFGITRRSNNTFDGFRYRSTFICSKGGQSRLRSGATRSARKRGTKTGCKAKMIVKDAHFQNRWEVIVLELEHNHPLDPSLLKFKKQLKNSPFLQNPPLMLEAPDSSSAAALSSRGDHIDETKKVDYKVAYDNVEDDILCLCRLFQFKEVVEFGSVNSESKGYALSIMREIRDKVISYEKSLRDQRVDSHVSTANFAYNPVNEDFNDDTLPISLSTKGWDVVQGQSKRSRKKKLATPNVLDTLKKKTKRAYNKRRNAMANTLNTAVTTTESITDATNHNQVNEGWPLTSTGAHETFPYGVETISFDLSQYNSAPSFHWPESSSRSQLQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0015230 | OsLima_07g0015230.01 | Chr07 | 19381422 | 19384723 | + | NAM | ||
| CDS seq | atggaagaggaggagtacaatacggaatcgtctaatgaggaagacatgcaagaagatgatggtgagaaacaaggaaatgttgccgagggtgatatcttcaagccggttgatatagatcccgcgtttgtaccaaaagtagggatggtgtttgagtcggaggaagacgcctttcagttctatgtgtcttacggctgccgctctggttttggtatcacaagaagatcgaacaataccttcgatggtttccgctatcgctctacattcatatgctctaaaggagggcagtctagactgaggtctggcgcgacgagatccgcaagaaaacgaggcacaaagactggatgcaaggctaagatgattgttaaggatgctcattttcaaaaccgctgggaagttattgttctagagttggaacataaccatccgttggatcctagcttacttaaatttaagaagcagctaaagaactctcctttccttcagaatccacctcttatgcttgaagcaccagacagtagctcagctgctgccctttctagcagaggcgatcacattgatgaaacaaagaaggtggactacaaagttgcttatgataatgtcgaagatgacatattgtgtctctgccgattgttccaattcaaagaagtagtggaatttggttctgtgaactcagaatcaaagggctatgctttatcaatcatgagggagataagggataaagtgatttcttatgagaagtcactaagagatcagagggttgatagtcatgtttcaaccgcaaattttgcatacaatccagtgaatgaggattttaatgatgacactttgcccatttctcttagtacaaaaggatgggatgttgtacaaggtcagtcaaaacgttcccgcaagaagaaactggcaaccccgaatgttcttgacaccttgaagaagaaaactaaaagagcatataacaagagaaggaatgccatggcaaataccttaaacacggcagtcaccacaaccgaaagcataactgacgccacaaatcataatcaagttaatgagggatggccattgacatctactggtgcacacgaaaccttcccttatggagtggagactatttcattcgatttgtctcaatacaacagtgcacctagcttccactggcctgaaagcagtagcaggtctcagcttcagtga
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| Protein seq | MEEEEYNTESSNEEDMQEDDGEKQGNVAEGDIFKPVDIDPAFVPKVGMVFESEEDAFQFYVSYGCRSGFGITRRSNNTFDGFRYRSTFICSKGGQSRLRSGATRSARKRGTKTGCKAKMIVKDAHFQNRWEVIVLELEHNHPLDPSLLKFKKQLKNSPFLQNPPLMLEAPDSSSAAALSSRGDHIDETKKVDYKVAYDNVEDDILCLCRLFQFKEVVEFGSVNSESKGYALSIMREIRDKVISYEKSLRDQRVDSHVSTANFAYNPVNEDFNDDTLPISLSTKGWDVVQGQSKRSRKKKLATPNVLDTLKKKTKRAYNKRRNAMANTLNTAVTTTESITDATNHNQVNEGWPLTSTGAHETFPYGVETISFDLSQYNSAPSFHWPESSSRSQLQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0015230 | OsLima_07g0015230.02 | Chr07 | 19380796 | 19384472 | + | IsoSeq | ||
| CDS seq | atgaggattttaatgatgacactttgcccatttctcttagtacaaaaggatgggatgttgtacaaggtcagtcaaaacgttcccgcaagaagaaactggcaaccccgaatgttcttgaca |
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| Protein seq | MRILMMTLCPFLLVQKDGMLYKVSQNVPARRNWQPRMFLT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 19383695 | 19383782 | + | OsLima_07g0015230.02 | OsLima_07g0015230.02,OsLima_07g0015230.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.413611 | 0.081304 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0496600 | RBH | 1.164648 | 2.808434 | 4.457204 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g31420 | RBH | 1.279620 | 2.422621 | 1.398303 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0496600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015640 | RBH | 1.068726 | 11.871565 | 9.207530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0015550 | RBH | 0.643263 | 2.532628 | 2.382915 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015520 | RBH | 2.205294 | 6.758222 | 10.719563 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015410 | RBH | 0.531874 | 0.310586 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015500 | RBH | 7.327407 | 7.764812 | 25.072540 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0310000 | RBH | 12.653452 | 16.474758 | 18.5724135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0015970 | RBH | 0.541269 | 0.710865 | 1.687744 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0321300 | RBH | 12.27478 | 11.595055 | 35.1957415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015400 | RBH | 0.761030 | 2.683672 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015420 | RBH | 6.165354 | 3.204355 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0015660 | RBH | 0.627393 | 0.710432 | 1.759716 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015450 | RBH | 0.446929 | 4.370750 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015380 | RBH | 1.100525 | 2.967802 | 3.084758 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015300 | RBH | 2.199576 | 10.233022 | 10.941058 |
