Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0013080 | OGI:07044190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:16395542-16400445 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgctgctcgtctccgttgccgtccccgcccctccgcccccgatctacgcctgggcgcccgcctccgcgcccctacatcaccgtcggcctgagtcgccgggctcgtcgtcgccaagccgatcccctccgcagggaggtgcagaaaccctcctcccctactggtcttttccttttccagtttgattcttgcaagttctagagactgatacaatcatgtaatttggaattcaaagttatgtgcacttagaaataataattttgctcatactcaccaaatccctttgattcactggacactcaagtgcaatattgaatccatcaacataacggaatcaaatactggagaggattggaacagattacccccatcaagttggtgaaataaaggagcaattaggacgaccaataaatctgctaatggaacacataatgaacagaaattccttagagcttggagtaatattagcactacagtcactatctttgaaaacgatcaggggagcattcattaccttggcccatgctaacatcagttactcctccactttgactggaacacctcaacacatgtgtcatcattagtttgaacctgtgaacgatgagtttgctattcacttcagggaagtaagctttagttggaaaccttggagcttatgatatcaatctaaaagaccattgagctaaatatatgcaaatctggagttgatttggcaaccacaaaaccaactgatataaatccttgagtccatgtatgaagaaaccacacttcatttttggtgaagccacaaataaaccctaaaaatgatcaaagacatacaatactgtggtattagtacaattccaatttacaaaaattgaacgaatcatgcatcacaagcactgtttacagaattttggctctgttcatagagaacagatcttcaaagcaaaattcatcctctatttccaattattatttttttgggctttgattcactcatagtagagaaataagagacgcaatagcactgcctgggcattatttgagaagaatgagaaacctatatgtaaattgtccatcctttttctgtacttatagtagcaaatcaatagctcaactaataatgtcattgaccaatggcaaaaaaaaatagatcctataagactgatgtttgaataacccaattaatcaatttttcacctataattttgtaattccatcatagcacaaatgagagagctatgaggtctaacaagaaagaaacataaaccacatcgtttcctttctttttagagcagcacaaatgagaaagagctatgaggtctaacatgagccttctattcaagtattccttgttggaatatgttggtctgaattaaactccatgcactacatttattctacaggaattagtatgctgatagtttacatcaatctcgctgcatgtgcactacaagagaattatgctattgccacaaaaatattgcaacaaacttttattcgtggccagtgcattattctattgccatgtccggtcgtcttgtggcaagtagtaaattatattacaacaatttagtattgttgttatactttagttttttttcatggcaattagtgtattttctctagccacaatatattactgttccagtaattttggactctttacaacataccaaaattgttgccacgacttggttaaattgttggaatagtactttttagtaaaacaaatattttttaagtgatgtaaaattttgacgtaactgatatggtctcaattattgtaccccttggagggactgaaatttttttatggcgcctaagcacaggacggtgggagttgtttcagataaatcaacgatcattaatctaactagaatgcctcgtttggtcaatttatttgtttcctttagtgtgtgcatggatttagaaataaaattcaaatgccagtgacaatagttagtctgagcgggagcaatgacctcgccaggccgcatgcacgcaccaccacttgctggaatccttgcctcggagccgtcgtctcgccgtggtgctaggtacatggctgacgctcgctctcgccgaccctgtgtgtgtgtgtatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgagtgcgtgtgtgtaggcgaggtgtagttgttgcgggagatcagtgggagaccacgcagatagcccagaatttgctctcaggttggggcaattggtattccataggtttcttcagattgtggatctcttcccctcttctgctcacccgatcccctcgtgccgcatgcgcacgaagcctttgcgtgattggagacgcctctcctccctccttccatcctggatttttcccgtctgtctcctcaggcctttcaaccttcaaatgtgccactgcatggattaggccataagcaattttcttagaaatgcacatgtcctgtaagaaaatggaatgcttttagttagaatggtgaccctttgtcaattctaagtcttcatgttccacttcaattagttggaatgaaaattccttgtcattcgaaggcttcaagtcccaatttcaatttatggttgtaaacttggagtattagtttatggtgtatcagcattcaacaaagttatgtgcagtttgaaaagagggcaatcggtccataatttgtcttgcatattatcttctcatttgctagttcaagatagcttactaaccactttgtaggaaggtcatcctttcactaattccattttcccttttacatgtgtcaaatttttattagtcttctctgcagctaatacaggaaaattactttagtttctactcagcattcttgtgtgataatggcgttagcagcaatctacagccttttcatcattaacaaatctggtggccttatatactacaaggtattgtttactgtactcctgtttctctttgttctttcaaagctggagtctgaacaccttgcacctctcatttatccaggactatggctcagcagggaggacggacaccaatgacagtctacgcttggcaagtctttggcattccatgcatgctatctcccagcagctgtcccctacacctggctgtgaaggcattgaccttctacaagcccacaactttgatctccattgcttccagtccctcacaggtcttttatcatcctcctctgttgtaaatttgcgtgaaaatctgacctggatgcttatagctgcaaagtttttagtattattgggttggaagtcaattattacagtttgtcgttttttctataagtatgcatcctatctctaatctttcactaagttactctttagttgttctgttttctgaatgttgtggagatagtcgcatgaattataagcacataatcatgggcttctatcttgcggttgcaagcatagtctgagtgtgatttacaggctttgcatttgctgaaataatgtttttgtacttgtggcttggcagttgggtacttggggcctgttccttgaagtgggcagcattctcagttgtatgcgttgtgagcatgatcactctcactcgtagcttgcttgatggacaaaatatattaaactaacaaactaacaatagcacactcctataaatggaagtttggacgagttacattgatatatgtgttcaagccatgccaagacttcagttcacgggaagtataaataatgatgaaacaagtttggccaaactaattaaatttagtgcttgattctattgggtattgtgttttctagtttctagtcatttttcagcagcaagatcctagagttctgtcctttcaaaattcttgaaaactttgatacaggggagttaatgtgtgagacaatagtattaatctgatacttcaataataagtgtggcttatggagccggattgcaatgtttattgaacttaagtgtgaatgtctgacagaagtgagatatttcttaatctatactaggtgcagatatatacagcaaaaaagacaatgaaagcattgggatatgctgtcctgctcagtatatctttttctatgcaaaacaatttaattggaatgctagagaacatactttcttgactatattgtgccttttgatctttaagtaggccctggtacatctctagagttagctatccagttatactttatttggtgactgaaaggaatgttgctaaattggttcaattgtaaacatagtgacccacttctgtttcatggggcaggtgtttttccgaattgttgattgttagaccaaaaaaaaattcactgtccttttgtggtttgcacttgcctgccgctgatctgtatgattttgcttctgtttcatcagggacaaagttttttgctgtatgcgaaactggtgctcaaaatatcgagactctactgaaagtcatatacgagctctacacggattttgttctgaaaaatccattctacgagatggagatgccaattcgttgtgagctttttgatctcaacctggctcaggtcattcagaaggaccgcgtcacacttctgggtcgatgaatcatttagaaaacatgacgcaccatgtctttgtatgtggcttatatgacatgtatggtgtcagtagggtacttggaattcaggcaagtcattacactgcatcacaaagtccatatacagtgtgcagtcgattccttctagttctgaaaattactttattcctgaagtatcatttgtgccattttggactttatatgtttccagtcgcaccaaccaattcaggaaggtgcatcacacccgtatttgcatttgcatctggcaatgaattcttattgaagagaacatatgaacaatgggcaatttgttttgcaccaatctccatactcaatataacatcctgaatactaccgaaactaattctttaacttt
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| CDS seq | atggcgttagcagcaatctacagccttttcatcattaacaaatctggtggccttatatactacaaggactatggctcagcagggaggacggacaccaatgacagtctacgcttggcaagtctttggcattccatgcatgctatctcccagcagctgtcccctacacctggctgtgaaggcattgaccttctacaagcccacaactttgatctccattgcttccagtccctcacagggacaaagttttttgctgtatgcgaaactggtgctcaaaatatcgagactctactgaaagtcatatacgagctctacacggattttgttctgaaaaatccattctacgagatggagatgccaattcgttgtgagctttttgatctcaacctggctcaggtcattcagaaggaccgcgtcacacttctgggtcgatga
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| Protein seq | MALAAIYSLFIINKSGGLIYYKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQKDRVTLLGR |
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| Function | Trafficking protein particle complex subunit 4 [UniProtKB/Swiss-Prot:Q54UU1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0013080 | OsLima_07g0013080.01 | Chr07 | 16395542 | 16400445 | + | NAM | ||
| CDS seq | atggcgttagcagcaatctacagccttttcatcattaacaaatctggtggccttatatactacaaggactatggctcagcagggaggacggacaccaatgacagtctacgcttggcaagtctttggcattccatgcatgctatctcccagcagctgtcccctacacctggctgtgaaggcattgaccttctacaagcccacaactttgatctccattgcttccagtccctcacagggacaaagttttttgctgtatgcgaaactggtgctcaaaatatcgagactctactgaaagtcatatacgagctctacacggattttgttctgaaaaatccattctacgagatggagatgccaattcgttgtgagctttttgatctcaacctggctcaggtcattcagaaggaccgcgtcacacttctgggtcgatga
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| Protein seq | MALAAIYSLFIINKSGGLIYYKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQKDRVTLLGR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0013080 | OsLima_07g0013080.02 | Chr07 | 16397486 | 16400422 | + | NAM | ||
| CDS seq | atggcgttagcagcaatctacagccttttcatcattaacaaatctggtggccttatatactacaaggactatggctcagcagggaggacggacaccaatgacagtctacgcttggcaagtctttggcattccatgcatgctatctcccagcagctgtcccctacacctggctgtgaaggcattgaccttctacaagcccacaactttgatctccattgcttccagtccctcacagggacaaagttttttgctgtatgcgaaactggtgctcaaaatatcgagactctactgaaagtcatatacgagctctacacggattttgttctgaaaaatccattctacgagatggagatgccaattcgttgtgagctttttgatctcaacctggctcaggtcattcagaaggaccgcgtcacacttctgggtcgatga
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| Protein seq | MALAAIYSLFIINKSGGLIYYKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQKDRVTLLGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.204244 | 0.015878 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0454700 | RBH | 1.506733 | 1.918319 | 8.249078 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g27150 | RBH | 0.709134 | 1.397910 | 1.618443 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0454700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0013450 | RBH | 0.270207 | 13.190373 | 5.377449 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013340 | RBH | 0.660241 | 0.000000 | 2.134932 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0003650 | SBH | 0.385594 | 10.675586 | 5.640327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013220 | RBH | 0.103289 | 0.347647 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013120 | RBH | 4.181450 | 17.360270 | 14.870258 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0261800 | RBH | 1.6054225 | 5.4447815 | 2.6301755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013610 | RBH | 0.349965 | 1.105011 | 1.353538 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0267400 | RBH | 2.162531 | 5.6399485 | 7.0603535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0003780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0013150 | RBH | 0.165982 | 3.711345 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013180 | RBH | 6.458728 | 13.105597 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013380 | RBH | 0.286775 | 1.842155 | 1.243266 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0013200 | RBH | 0.000000 | 5.765771 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013150 | RBH | 0.441479 | 4.480651 | 4.409009 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0013010 | RBH | 0.494020 | 14.411658 | 4.369973 |
