Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0013040 | OGI:07044170 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:16361661-16364231 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagcatgaattttcagtatatgaaaaccctcttaaaaacaaattcagtattgcaacaatccacaaacattgcaacagatagatcatgcttgattctccaagtaagattttcgaagatgatctaatcagaatccgaagtaagatccatttcagggtgaaacgggcggagtaactttgctaggtgctcccccatgtcatccacctcctccctcccgaagccccagtcacggaggaccagagacccgatggcacctcttgcgacaccgtgcttctggaggctccccgatcgcctctctatgaaaggcaggacggtgctgcttgatcgtaatcgtgccgccatcggtatcgattcaatatcgagtgagccctttggctgggattcttctgcatggtcgctaaggatctccccgtgccggccaatgttgcctgaagattgacgggaacggaagggggacagggagggagcaaagagatgctgagagatgggaaaattttggctttgtctctctggcttcgtagactgaacataccgagtctttcactcgtgatatggaagtcctttgcccacctgtgcaaacaaatttcaattgttaattctttgtatttctacatgtataaccaaaatttagccaccatgcctataatgttgtgaaatgttcaatattgtacaatataacagtagaaaaataagttctgttggcatgacaaaacttccccatctagttttccgcgcgcatgcttttcaaactgctaaacggttcgttttttgcaaaaagtttctatacgaaagttgcttaaaaaatcatattgattcatttttgaaaaaaaaaatagctaatacttaattaatcacgcgctaatggaccactccgttttccatgcggaggagataggttcccatcctccagtaccgaacacagccttaatcagaccctacggcaaaagataagatgtgcagacctctatcaagagctccatgaaccaccagcgattcaactgaataaggatcttcgtcctcgtcgctgatttcaggggtcaaagagtgcagcttcatctctatgttccccaatagcatctctatctgcaaattagatgtgtgcaattagcaagcaagattaaatttccatccaatgttggtataacagtagggcatatgttatgttgtgtacctgtcaaagaaggggcaggcatcgctacatccagagcaataaccatattctgccgaccttgatcagataaaatgtgcagaagttcaccaatgtcaagattaccagatgaatgtgctaagtctgaactcgggcccgttcgttgcaatctaaatggagcagtaattgaatgtattgctgcagcacaaacagcactagcatggaatggtttctcgtcttgtatataaagatacggtgacatgtaacctgatgaaacagagtgaaaggaaatttgtgagaaaatctcattcggaataagctttctgtacattcacgaaagtattttttaagggaattcatgaaagtaattttgtatggaaatcaaatgtgaatatacagcatgaacaaaaggagttgattctctcttaatggaaacgcaatcaagtgcagtatcttaaggcacaagatcagtatacatgaaagcaatcaaaggcaaaactaggccaccggaaagaagtcctataaaatcacagaataacaatagcatcgcaatttagtatcctcctgtgtatttagccaacttacgagaactcctcagacctaaaagtgttcgaatggaaagttttcaaaaaagaataaaaaaataaactaaaatcgtggagttcaggcagagggcatacttctacttaatgaaggcggtcctatggggaccatcaggttgcaaaaggacgaaagttttgaaaatgaaacagcatcatgaagagctctcataatggactccctttgattcatcctggatgatccaagggtcattggatccctcacacagtaaagcaatacaggtgtatttgtgtaatcatcagcaatgttctccaaaaactgtgcagctacactggaaaaacttcctgaatcacccacaataaactggatgccctgtggtaaattatgaatcaattaagctaaaaataatggtctcaaaatatgcatgatatcgaaaatgatgtgcataagtgaacattagcttgttgcaaaactatagtagagtttgctgataatttactggggaaaagttggacctgaatatggtcgcattcttcaacaaagaaccttagcctctcattcatttcctctatttgcgaccagtctgaaacaacctcttgtgcactgccatagttatcaaacttgtcaaagtctgtccatgacccatgtaactcatataaactctgaggatgatactgaacttttgaataatccgtccaaaagttgacgccattctctagacagtcgatcaggtccttatcttcaacacttttctgggagttgctggcaccattgctagtgcttggattctgcccttcttcaactaagctttgcagaaacaagttccgcccatgaggttttgagactgatcttgttacatttccaga
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| CDS seq | atgaatgagaggctaaggttctttgttgaagaatgcgaccatattcaggtccaacttttccccagttacatgtcaccgtatctttatatacaagacgagaaaccattccatgctagtgctgtttgtgctgcagcaatacattcaattactgctccatttagattgcaacgaacgggcccgagttcagacttagcacattcatctggtaatcttgacattggtgaacttctgcacattttatctgatcaaggtcggcagaatatgatagagatgctattggggaacatagagatgaagctgcactctttgacccctgaaatcagcgacgaggacgaagatccttattcagttgaatcgctgtctacgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgctccctccctgtcccccttccgttcccgtcaatcttcaggcaacattggccggcacggggagatccttagcgaccatgcagaagaatcccagccaaagggctcactcgatattgaatcgataccgatggcggcacgattacgatcaagcagcaccgtcctgcctttcatagagaggcgatcggggagcctccagaagcacggtgtcgcaagaggtgccatcgggtctctggtcctccgtgactggggcttcgggagggaggaggtggatgacatgggggagcacctagcaaagttactccgcccgtttcaccctgaaatggatcttacttcggattctgattag
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| Protein seq | MNERLRFFVEECDHIQVQLFPSYMSPYLYIQDEKPFHASAVCAAAIHSITAPFRLQRTGPSSDLAHSSGNLDIGELLHILSDQGRQNMIEMLLGNIEMKLHSLTPEISDEDEDPYSVESLSTKPERQSQNFPISQHLFAPSLSPFRSRQSSGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRSSSTVLPFIERRSGSLQKHGVARGAIGSLVLRDWGFGREEVDDMGEHLAKLLRPFHPEMDLTSDSD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0013040 | OsLima_07g0013040.01 | Chr07 | 16361661 | 16364231 | - | NAM | ||
| CDS seq | atgaatgagaggctaaggttctttgttgaagaatgcgaccatattcaggtccaacttttccccagttacatgtcaccgtatctttatatacaagacgagaaaccattccatgctagtgctgtttgtgctgcagcaatacattcaattactgctccatttagattgcaacgaacgggcccgagttcagacttagcacattcatctggtaatcttgacattggtgaacttctgcacattttatctgatcaaggtcggcagaatatgatagagatgctattggggaacatagagatgaagctgcactctttgacccctgaaatcagcgacgaggacgaagatccttattcagttgaatcgctgtctacgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgctccctccctgtcccccttccgttcccgtcaatcttcaggcaacattggccggcacggggagatccttagcgaccatgcagaagaatcccagccaaagggctcactcgatattgaatcgataccgatggcggcacgattacgatcaagcagcaccgtcctgcctttcatagagaggcgatcggggagcctccagaagcacggtgtcgcaagaggtgccatcgggtctctggtcctccgtgactggggcttcgggagggaggaggtggatgacatgggggagcacctagcaaagttactccgcccgtttcaccctgaaatggatcttacttcggattctgattag
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| Protein seq | MNERLRFFVEECDHIQVQLFPSYMSPYLYIQDEKPFHASAVCAAAIHSITAPFRLQRTGPSSDLAHSSGNLDIGELLHILSDQGRQNMIEMLLGNIEMKLHSLTPEISDEDEDPYSVESLSTKPERQSQNFPISQHLFAPSLSPFRSRQSSGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRSSSTVLPFIERRSGSLQKHGVARGAIGSLVLRDWGFGREEVDDMGEHLAKLLRPFHPEMDLTSDSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0013440 | RBH | 1.071457 | 3.162438 | 8.268978 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013330 | RBH | 0.260532 | 2.008509 | 4.257549 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013300 | RBH | 1.394246 | 5.157963 | 10.243990 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013210 | RBH | 0.425511 | 0.136901 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013060 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0261500 | SBH | 2.8001615 | 12.739591 | 10.171439 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013560 | RBH | 0.0 | 0.135700 | 0.290942 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0267200 | SBH | 3.1418365 | 12.7755405 | 9.313763 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0013110 | RBH | 0.392211 | 4.707498 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013330 | RBH | 0.090890 | 0.000000 | 0.752854 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0013140 | RBH | 0.096934 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013120 | RBH | 0.351692 | 2.933727 | 1.960536 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0012970 | RBH | 0.000000 | 0.000000 | 0.618520 |
