Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0010550 | OGI:07006270 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:11786200-11791967 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagattaacgagaaaattgacgatagagaagcaaatttacagtacgcacagaaaggaatcacaagtttgagcgatttggagaagggaaaaggtgaagagcaggaaaaatcaacaggtaagtgcaccttttgattcctcctttgaaatatcttgttgttttgaatctggatctgaatgttgatcttgaattttgttcttctgaccattctagataaactttaactctgatcttttgaagaatgtgaaattttggagagttttccttgagacattcaaatattcacacatattgacttctgaatatacacatgttcacacattgtagacagtgcctctctcgaaacttttgaattcctgttaaatgaacatcacagtatcagaacagaatagaaaattttaggaggataaacagaatcattacaattttaggaggataaacagaatctcttgggtagaacatcagcaaattcatgcaactcataaacacatctcattcaaaaattttacatgaataaggaaactcaaatcactgccacaagtaattctctccactgtcatgaaagcaagtcatctcaaactttcagaaaattaaaattcaccagcaataaacatgattgtaaaaaaatcagtgtgaactattcagtttgtaattaaaactattcagtgtaaacagaacactaaagcatgtcatgtcaaaatttcattacagaacactaaagcatttcatgtcaaactttcattgtttaaaaaattcattgcctactatttcattctgaaattaaaacaagtgaaattcaatgtagttcatgtccttttgtactaagaaacaaaacaagtaaatacgtcaaaaaattcagtccaccagaaattgttgtcaatcaggcaacattttgtattcatgttgttaatgagctgatgtacttcaatgttcaaaaacatatcaatccagattcaaacaattccattacaaaccaaagcttagacaaacaaaaactttgaaatataaaaactacagtgaatttgtaccataattacatagaaaaaaaactgtaatttcaatattgaaatcatgtaactgacattgtagatcatatagatcaggagaatcaaaatcattacaaaaaaaagaaataaatacaaaagtggccatcagataagtaaaaaaacatgtcacatcctgatttttgtttcaggatttataaattatttaataaattattattagaatttatattaaatgatctttaatttacaagtgaagttaaatgtgggaaataaaatttcccaaatataaagcatggatggatttaatttttattaaattctccatgattaagtcaactctctgaaattttctcggatttttcagagctcaatttctaaatgatacaaagaacagttcagtaattatttgatcaataatgatctaattataattgttaagagcttatcttgtttaaaaatccttaaattataaatttttatttaaaaggaattattagaaatgatcttaaaagcctaaaagagaagatctaattttaatttgttaaatctcaatataaaattgggctaaataaaattttgttaaatactttgcttgattctatagttcctagattttctgggatttatttgagccaaggaagtatttttaataaatggaatttcatttcatgaataatttaaatagaaaaaggttttaaaatctttcttttggttttgggccgaaagtcagccacagcccaagtctctctttccttctccgtctctcctccccggcccagtcagcccagtccgccgaaccgtcgctctcctttctctctttctcgctgacaggtaggtcccgcctgtcggacccatcgtcttcctccggccgccgccgctcgaaccctagcgccgcgccgccgtcgtctccttccaaattcggccgcgcctttccttctctggtgaaatcaatagaggggaaatgatctccgggatctcctccaccttttctcttttggaatcatcgtctaaatcgctttggaaaccggtggatttgagttggattcggattcatctctctcctctaaccctagactttccttctcgccgccggtcgccgtgggcctccgtcgctgctcgctagcccctttaaaagcacccccgagctctcctctatccgccgccacctttgccttagcccgccgtcgcgtctagcgccgcctccgcgtagccctagccgtcgctgtcgttgccgtcggttcagccgcgccgcgccgccgttgcagccgctgtcgtcggtcgccgtcgccaccatcgggatcacgaggttgtcttcgtccccgtccaccgcttcgccgcggccgaagtccgccggagcaccgctgtcaccgtcaacccgaagaccgtcgccgcttcttcctcgtcgccggcgccatccgttgctcttccgccgttgttttggtcaccggtgagtttgccgcgtcgccctctacccgttggtgtcctccgtttgagtcgtcgcgccgtcgttcgccggcgagcatccgttgccgagccgccgccggtgctgacgtcatcgctgacgtcatcactgacgtcatcgttgccgttccccgtggcccggccgtggatcggtcgatctcggccgtccgttcccgtgaaccgctgccgtgcgcccggtccaccgcaaaccctagccgctgacgcaataaacctcttttccttttcaaaaataattcattattgcgtcataattccattaaattccatataagtgttttaatccgatttaatctttgaaaattcatatctaattcattgtaactcagtttaatgtggttcaagttgcaaaaattatataaaataaagatctatatattaaaattatccataaattgaattaaatttatttaattcttttcaaatgggctttaattagatttaatcttgtaaaattcgtaataaattcatttgaagtcaaaatgaggccgttcaagtcttataattcatctaaaattatgatctacatgtttgtttactttttatgtattgtttatttggtttttattagtcttttccttgttttgcgtgttagcttgtcgtttccgtcgttgcgaaggttcgcgagtgcgtcggaagtgttcaagaagattaattgaagaccgattattgcaaggcaagtcacacagatcctaaacacaatcctttgagcatgttgatcctatatttaaattctctatttatttcaactgtgcatttattttcgaatatcactgggtggtgtgaatctattcctttgttatggcctgtttgcattgattactttatcccttgataccttgggttattttaacttgactagatgtgattagatgtgattgctagatattagatgtgattgcttagccatgcttagaaacattagcacactattgggataacttatgattcactattacttaatgatgatttaatgatagttcacgatggtcaatcgtgattggtaaattaattacttgccaactaaaacttgataatggtgggttgtgagcacatggttttgagagtcgtgctcatgacaactaaggaccggttcacgagctactattgtgaaacattaaccgtgccaaccacaagccagcgtgggcaacggctttaccttttgtatagcatgattcattgcggagcaccaaactgagaagtggcggagataagcccacgggggtcgctggggactccatgccttgtttataagggggtgattatgatccaggaaaggtgcgctgtggtggattgtgttgtgcaaggggtattgtcacagctcctttccgaggtaccgtggtggtattgaggcacatggtgacatgttgtggggctgtgtcttgtgggtacagtggtacacctctggccagagtaaaactattcgaatagccgtgcccgcggttatgggcgggttgagcaatgtttttcgtgattagtctcacacctctcacaataattatggatgttatacctggtaataatttgcttagctcctggtttggagttagatctgtacagccgagtatagttgttcaggatggttgggcctgtgcagcatgggtgtgttgttcagtgttgattaaaatttctgattaattactccactattttacttctcttaaatgttttactaaaagctgcttttgcaaatgagcctatattatgccatcctttggtatccttgtgcacttgcatatttgctgtgtggcttgctgagtatgtcatatgctcaccttgcaataatgaatcaacctcagttgaagaaaaaggatccggaaggagaagacgtttgacttataccccagttgagctgcctgtgggagtggagccggagcttcgttagattttattttccgctgcagttttcttcatggtgaggactaagtgcctcttaagtaagtatttatcattttagttaatttgatgaatctgtatattaaactgtcagtttgtgtacctcggctgattcctagacgaggattttatgcacaaataagttcggaaattactagtgaatttccgggcgtgacaaaacaccccaattctctacacatcatctggacaagaattttaatcattattttaacttagcatgattaattttcttgcctgatgatgtgcagaaaattgatttgcttaatcaaaaaaatatttatcatcatctggcaaaaaaaattcattaagggtaatgcttctattttcaggaacaaaagagaagaaattgaaaatatcaaatgtcctaaagatggcggatgaaaagcaattcgaagcagggaaaacatcaagtggtaaatgcattactctgtattattcatgtttagttctgtttttttttgcactaatcttctataaaattacttttttgtattgaaacagatttaggcaaaaaatcacaaggtctgaagataatgaagcaattagcaggtatattatgctaaattttataatattatctatttatcaaattaaacaataggacgagagaaaaattatgtatctgatcttaataataaacttttgcaggaaaaattgaagctggaactagtactgattctgttaattcaaaatcaggtttgcaaaagaagtccaaaactttatactaatattacttgaaccacaaaagattcatatagaaaaatgaaaaaaatggcataaaaacaaatgtggccatcagataagtaaaaagaacacctcaattctctgcacatcatcaggacaagaattttaatcattcttttaacttagcatgattaattttcttgcctgatgacgtgcagaaaattgatttgcttaatcaaaaaaaatatttatcatcatctggccaaaaaaaaaattcatgaagaggaatgcttctatctttaggaacagaagagaagattttgaaaatatcaaatgatctaaagaaggctaatgaaaagcaattacaagaagtaaagacatcgagaggtaagtgtgttattgtgtaaatttcatattaagtactttttttgcactaatcttgataaaaaaataacaaattttggtttcgaaaggttttaaaacagataccgacaaaaaagcacagggatttaagacaatgaagcaattaccaggtaattataagaataattagaagaataattaaaagtaaaaaattatgcttctaatttgttttataatcttttgcaggaattttcaaagatggaacttgtactgctttggttcagtcaaattcaggtatacaaaaagaagtccattaa
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| CDS seq | atggagattaacgagaaaattgacgatagagaagcaaatttacagtacgcacagaaaggaatcacaagtttgagcgatttggagaagggaaaaggtgaagagcaggaaaaatcaacaggaacaaaagagaagaaattgaaaatatcaaatgtcctaaagatggcggatgaaaagcaattcgaagcagggaaaacatcaagtgatttaggcaaaaaatcacaaggtctgaagataatgaagcaattagcaggaaaaattgaagctggaactagtactgattctgttaattcaaaatcaggaacagaagagaagattttgaaaatatcaaatgatctaaagaaggctaatgaaaagcaattacaagaagtaaagacatcgagaggttttaaaacagataccgacaaaaaagcacagggatttaagacaatgaagcaattaccaggaattttcaaagatggaacttgtactgctttggttcagtcaaattcaggtatacaaaaagaagtccattaa
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| Protein seq | MEINEKIDDREANLQYAQKGITSLSDLEKGKGEEQEKSTGTKEKKLKISNVLKMADEKQFEAGKTSSDLGKKSQGLKIMKQLAGKIEAGTSTDSVNSKSGTEEKILKISNDLKKANEKQLQEVKTSRGFKTDTDKKAQGFKTMKQLPGIFKDGTCTALVQSNSGIQKEVH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0010550 | OsLima_07g0010550.01 | Chr07 | 11786200 | 11791967 | + | NAM | ||
| CDS seq | atggagattaacgagaaaattgacgatagagaagcaaatttacagtacgcacagaaaggaatcacaagtttgagcgatttggagaagggaaaaggtgaagagcaggaaaaatcaacaggaacaaaagagaagaaattgaaaatatcaaatgtcctaaagatggcggatgaaaagcaattcgaagcagggaaaacatcaagtgatttaggcaaaaaatcacaaggtctgaagataatgaagcaattagcaggaaaaattgaagctggaactagtactgattctgttaattcaaaatcaggaacagaagagaagattttgaaaatatcaaatgatctaaagaaggctaatgaaaagcaattacaagaagtaaagacatcgagaggttttaaaacagataccgacaaaaaagcacagggatttaagacaatgaagcaattaccaggaattttcaaagatggaacttgtactgctttggttcagtcaaattcaggtatacaaaaagaagtccattaa
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| Protein seq | MEINEKIDDREANLQYAQKGITSLSDLEKGKGEEQEKSTGTKEKKLKISNVLKMADEKQFEAGKTSSDLGKKSQGLKIMKQLAGKIEAGTSTDSVNSKSGTEEKILKISNDLKKANEKQLQEVKTSRGFKTDTDKKAQGFKTMKQLPGIFKDGTCTALVQSNSGIQKEVH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g18820 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010680 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010690 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0001580 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0196800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0011080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0197300 | RBH | 0 | 0 | 0.0136925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0001630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010620 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0001630 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0001660 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0001680 | SBH | 0.0 | 0.0 | 0.0 |
