Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0009180 | OGI:07025320 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:9147105-9151577 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtttctaatatctactgaagtgaaagagagagtttcaggtatgacgacgacgacggtacctagcccagcaaacatgtagaattcatcgtcggtgtcatcatccatgaaggaatccatatcatctatagtggaatgaaaagttagtatgcggaaggttacaaattgcaagtatgaatgataacatatatatatatatatatatatatatatatatatatatatatatatatatgataccatcctcaaaggtgctcgatcgtgcaagatgatctgcagcatgctcagcttgcaggttcgatgtagctggcacatcaacggttgtttccaagcaaggcgttggatctagcaacgacgggctgctaccctcagggcactccaatgcaattgattcagcgcatggtttgtcacgcctagcagctgcatagagtgcattacgtcgtgccaaaagagcagacctttcccctggagtaaccctttgtcgtcttgacctaaggctggcattcatatcatgtatttccacatctggcatattttgccttgctaccctacgtcgggcgttcatatctaatctttgttcttttgttagtgattgacgtcgtgatctctgtcggtccaccttagcttgcttctgctccgttgtaagagtcgcaggcttgtcgctacattgaggtagttttgactgtagatggtcttttgtaatactggatggcgcacacaccacttcattatctattgatgtgccaacataataagaagatctatgtaattgtttgctcgtcataatcaataacaatcttaatacacatctaatctgttcgcaaagaggttttttgttgacaatttggtagtaacaaacatattatgaagaaatattagtattacctagcgagatgtcgtcattctaatcattgccttcaaatataccacattcatgcattgggctatgtgtattttggtttccacttgttaggattggatcataatgagtttcacttcctgttgtaacatattgtcacgaccggaaataacccaacgggcgttccttacgtgcgtgcattattccttgtcccaggaggcaaggtacaccaaaagttgatacaattcagagtttaacaagcggaagcgtaattaattaatttattacatgggcggcaaaggcccagcacataagaagacaaacgaaaaactgcggaagactagggcgacgaccacaggcgcttgacggcaggcacgagctaggcaccaaagccttcatcttccaggggctcctcttctgggtttgggaaaaattgagcaaaactgagtacaaccaccgtactcaacaagacacacccataagtgcagaataaatgcaatggagtacaagggggttataatataaagggttagggtttgcagtaaacagcactaaaagacacttagttgctcaaagctgttttgtaaacacgattctagagctatacaatattattaaacaaggccgtgaacccacacgaacctgccttaacccaaggcctacgatgattcagactgaactggcaacccgaccctgggtcccagttcatcccaagccaacccaggccaaccattccacattttagttgttaagcaggttttaagaattaaaacgctaacttgggtacattgctaggcatgcccataaccgagggcgcggctattcgaatagattatactctgatcagaggtgtacatctttacccacaagacacatcttcctcacgtataaccacgtgccacataccaccacggtatacggacggaagacgtgacatagtttccaacccatcctagccatagacaagagtaccgacccaatcccacctacggccggaacctccgggacaggtaggcaggactgagcccctagcagcaggacaccggccctgtgccatgacatctcgactaccgagccgcagctcttgtagccttcatttgccctagagatgtccatcgacccccaacttcgtccatctccatccgtgtacttttgtttataactagactgagccacaaactaagccttacccactagacatgtggaagtatggtagtgctttgcaacagaggcccgaagaccggtccttatatggccgaggtgctactatcaaaaccatgcaccccgagcccagcctaaaaccattttgagggttttgaatagagggggaggtgtgaatccaattccacaataatccaaccattccatagtgtccaggtgatgagaatattcccaatgtctagagttgtaaaaccacctaatgttgcctaattaaccagcgaagcatctacctaaaatcatattagtggtaccatgagtagagtgtccactagttggggttttgtttattctagggtgaaaaaggtaataataacaataacaataataaggtcataacaaaggtacataggcatggctatataaaacagtgataacgcgggaatttaaataaagcgataatgcaataatttaaatcaaaataattttataaactgggattcaatatgttcaaggatgatgtgacttgccttgctcgctttcccaaacgtcggcttcaacctcctcgaagagcggatcttccgaagctgcagcgtctatacgaccaatggaaaataaaagggcttttactctaataaactccatataacaagtaggaacaaagcacaaaaatgggttcttgacttcttaaggaaaaattagagacttgaacggtccaattccgagttcaaatggccaagttatggccatttgaagtttatatgctctttaaatgaatatttgcgaatttcttcatttaaaattttaatttaaaaagggtttattgcgtcagccgaggggagggggcgcgcggaccaggtccacgggagtggggcccacgcggcagcctcatggtccacggtggaccgggtgcacccgggctcacaccggccggcgccgtgggtcccacgcgtcagccgcacccaaggacgcgggcggctgacggccgggcccaccggcgtgacggagcggcggccgagagaggggagggatgggggaaaggaggcgacggtccacggctcaccccggggcgacggcggcgacggaggaggcggccggagcggagggaggcggcggcgcggctcgggtcgacggggtcgacggcgttccagcggtcggcgaccgaaacggaaaggtggacgaggttggcgaggatgcggcgaacccgaaggaggcggcgccgaggtgggaggcggtccggggcgacgacggcggcggaccggagctcggcggcgacggcggagagagagagcgacgtcgcgagctcgaatccggcgaggaggaagggcggcgagaggcagaaacggatggaggaggtgcagggagggtttaaatagggttggaagggggagagagcggccggaggggaaggaaaccggtgcgggaggtccagccgccatcaatggcgccggcgagatttgcgggggcaaatccgcccgtttgaacgcgagagagagggaaaaatggggggaaagggagaggggatcacggggagtatttccccccactttattgcacgcggggacggcgggaggcggcgggattcgcggcggcggcggcgctagggcgcgggcgaggcggcgggagcggcgggaggtcggggatgacgggtgggccccacctatcagcgagggtggcgggcgggcccgcccgtcagcggcgcgcgcgcggggagaggagagagagaggggggagagatgggccgtgccggcccaaggaagggaagggggacttttagggtttttctttttataaaacctttttaactttgtttatttcttaataattattttttgtgctctgaaaattccactaaaatttatttacgctttttaggcttttaggaaatatacaaaaatcctctaagctttatttgacttttaactttgcacattttaattgttggaggctttcacacggattttaattattctaggcataatttagaggatgtattttagagtcgttttgggacgtgacacatacagtaagtaatatatatatattgtgatttataaaaactacgaatggtaacactgtaatcccattaatgaaaagaaaccgcttacttgaattatcaactataaagccagaagaattcatgttttgagttgtttgaattacgcagctcaaaggtacttcgttgggaccatagtgagctacattgttgatgattgtaaatgggagacgtctaggtgtgatgttgagatggcaagcttcactttctattaaaacatagaaccatcacgttatcagactgtacacaacaataatggcattgcattccgccctcttatagcatgcggactgtaataatatgttattcttaccttgatgcagtgcgggagaatcattcacttccatttggcacgtcattatatcagcagctcttatatttgtaatatcgccaagtgggg
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| CDS seq | atgacgtgccaaatggaagtgaatgattctcccgcactgcatcaagaaagtgaagcttgccatctcaacatcacacctagacgtctcccatttacaatcatcaacaatgtagctcactatggtcccaacgaagtacctttgagctgcgtaattcaaacaactcaaaacatgaattcttctggctttatagttgataattcaaataatgaagtggtgtgtgcgccatccagtattacaaaagaccatctacagtcaaaactacctcaatgtagcgacaagcctgcgactcttacaacggagcagaagcaagctaaggtggaccgacagagatcacgacgtcaatcactaacaaaagaacaaagattagatatgaacgcccgacgtagggtagcaaggcaaaatatgccagatgtggaaatacatgatatgaatgccagccttaggtcaagacgacaaagggttactccaggggaaaggtctgctcttttggcacgacgtaatgcactctatgcagctgctaggcgtgacaaaccatgcgctgaatcaattgcattggagtgccctgagggtagcagcccgtcgttgctagatccaacgccttgcttggaaacaaccgttgatgtgccagctacatcgaacctgcaagctgagcatgctgcagatcatcttgcacgatcgagcacctttgaggatgatgatatggattccttcatggatgatgacaccgacgatgaattctacatgtttgctgggctaggtaccgtcgtcgtcgtcatacctgaaactctctctttcacttcagtagatattagaaactaa
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| Protein seq | MTCQMEVNDSPALHQESEACHLNITPRRLPFTIINNVAHYGPNEVPLSCVIQTTQNMNSSGFIVDNSNNEVVCAPSSITKDHLQSKLPQCSDKPATLTTEQKQAKVDRQRSRRQSLTKEQRLDMNARRRVARQNMPDVEIHDMNASLRSRRQRVTPGERSALLARRNALYAAARRDKPCAESIALECPEGSSPSLLDPTPCLETTVDVPATSNLQAEHAADHLARSSTFEDDDMDSFMDDDTDDEFYMFAGLGTVVVVIPETLSFTSVDIRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0009180 | OsLima_07g0009180.01 | Chr07 | 9147105 | 9151577 | - | NAM | ||
| CDS seq | atgacgtgccaaatggaagtgaatgattctcccgcactgcatcaagaaagtgaagcttgccatctcaacatcacacctagacgtctcccatttacaatcatcaacaatgtagctcactatggtcccaacgaagtacctttgagctgcgtaattcaaacaactcaaaacatgaattcttctggctttatagttgataattcaaataatgaagtggtgtgtgcgccatccagtattacaaaagaccatctacagtcaaaactacctcaatgtagcgacaagcctgcgactcttacaacggagcagaagcaagctaaggtggaccgacagagatcacgacgtcaatcactaacaaaagaacaaagattagatatgaacgcccgacgtagggtagcaaggcaaaatatgccagatgtggaaatacatgatatgaatgccagccttaggtcaagacgacaaagggttactccaggggaaaggtctgctcttttggcacgacgtaatgcactctatgcagctgctaggcgtgacaaaccatgcgctgaatcaattgcattggagtgccctgagggtagcagcccgtcgttgctagatccaacgccttgcttggaaacaaccgttgatgtgccagctacatcgaacctgcaagctgagcatgctgcagatcatcttgcacgatcgagcacctttgaggatgatgatatggattccttcatggatgatgacaccgacgatgaattctacatgtttgctgggctaggtaccgtcgtcgtcgtcatacctgaaactctctctttcacttcagtagatattagaaactaa
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| Protein seq | MTCQMEVNDSPALHQESEACHLNITPRRLPFTIINNVAHYGPNEVPLSCVIQTTQNMNSSGFIVDNSNNEVVCAPSSITKDHLQSKLPQCSDKPATLTTEQKQAKVDRQRSRRQSLTKEQRLDMNARRRVARQNMPDVEIHDMNASLRSRRQRVTPGERSALLARRNALYAAARRDKPCAESIALECPEGSSPSLLDPTPCLETTVDVPATSNLQAEHAADHLARSSTFEDDDMDSFMDDDTDDEFYMFAGLGTVVVVIPETLSFTSVDIRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009440 | RBH | 0.0 | 1.859769 | 0.939541 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009240 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0152600 | SBH | 0 | 0 | 0.160311 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0153800 | SBH | 0 | 0 | 0.255054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009330 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
