Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0008970 | OGI:07024650 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:8878611-8879420 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caaactaaaccgcacattagattaatactttgtgcaggaaaagacatcactcacacaacacacaagtagcactaaacaatcaccacttgcaaattatttaaacacaattgcacaaatatccaaattaattaacacaattgcaacaacaaccgctactttggcactaaactagcagttcttctcggccttggcgagcttgcacttgaccttctggaacaccaccgccgccggctcctgccccggcggcgcgagctgcagcttgagcttgcacgtcgcctcgatcttgcacttggtgatccgcgccgtgtagctcaccttgccggtgacccccacctccacctcgaacgtccccgtggcgttctccttcttgaactcggcgacgccggcgttgcccaggccgggcgccgcggccgcgtcgctgccggaggagagcctgtacaccaccgtcttcttgggcccctgcttggcgcccttgtcggcgagctggatgcggtcgaactgctggccgtcgaacctgtaggcggcctcgagcggctcgacgttcttcatggacatggcccagttgcggttgcggaaggtgagggcaagggagaggttgtaggcgagggcggtggtgggcgtggcggcaagggcgaggcgggtgagggaggcgtcgtcgacggtgatggagggctggacgacgaagccgaaggcgacgacgaggacgacgatgagggcgatggcgaggaggatggcgatgcagaggaggcaccagcagaagtccttccagctggagcagcactcgccgcagccatcgtcgaacacccccat
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| CDS seq | atgggggtgttcgacgatggctgcggcgagtgctgctccagctggaaggacttctgctggtgcctcctctgcatcgccatcctcctcgccatcgccctcatcgtcgtcctcgtcgtcgccttcggcttcgtcgtccagccctccatcaccgtcgacgacgcctccctcacccgcctcgcccttgccgccacgcccaccaccgccctcgcctacaacctctcccttgccctcaccttccgcaaccgcaactgggccatgtccatgaagaacgtcgagccgctcgaggccgcctacaggttcgacggccagcagttcgaccgcatccagctcgccgacaagggcgccaagcaggggcccaagaagacggtggtgtacaggctctcctccggcagcgacgcggccgcggcgcccggcctgggcaacgccggcgtcgccgagttcaagaaggagaacgccacggggacgttcgaggtggaggtgggggtcaccggcaaggtgagctacacggcgcggatcaccaagtgcaagatcgaggcgacgtgcaagctcaagctgcagctcgcgccgccggggcaggagccggcggcggtggtgttccagaaggtcaagtgcaagctcgccaaggccgagaagaactgctag
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| Protein seq | MGVFDDGCGECCSSWKDFCWCLLCIAILLAIALIVVLVVAFGFVVQPSITVDDASLTRLALAATPTTALAYNLSLALTFRNRNWAMSMKNVEPLEAAYRFDGQQFDRIQLADKGAKQGPKKTVVYRLSSGSDAAAAPGLGNAGVAEFKKENATGTFEVEVGVTGKVSYTARITKCKIEATCKLKLQLAPPGQEPAAVVFQKVKCKLAKAEKNC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0008970 | OsLima_07g0008970.01 | Chr07 | 8878611 | 8879420 | - | NAM | ||
| CDS seq | atgggggtgttcgacgatggctgcggcgagtgctgctccagctggaaggacttctgctggtgcctcctctgcatcgccatcctcctcgccatcgccctcatcgtcgtcctcgtcgtcgccttcggcttcgtcgtccagccctccatcaccgtcgacgacgcctccctcacccgcctcgcccttgccgccacgcccaccaccgccctcgcctacaacctctcccttgccctcaccttccgcaaccgcaactgggccatgtccatgaagaacgtcgagccgctcgaggccgcctacaggttcgacggccagcagttcgaccgcatccagctcgccgacaagggcgccaagcaggggcccaagaagacggtggtgtacaggctctcctccggcagcgacgcggccgcggcgcccggcctgggcaacgccggcgtcgccgagttcaagaaggagaacgccacggggacgttcgaggtggaggtgggggtcaccggcaaggtgagctacacggcgcggatcaccaagtgcaagatcgaggcgacgtgcaagctcaagctgcagctcgcgccgccggggcaggagccggcggcggtggtgttccagaaggtcaagtgcaagctcgccaaggccgagaagaactgctag
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| Protein seq | MGVFDDGCGECCSSWKDFCWCLLCIAILLAIALIVVLVVAFGFVVQPSITVDDASLTRLALAATPTTALAYNLSLALTFRNRNWAMSMKNVEPLEAAYRFDGQQFDRIQLADKGAKQGPKKTVVYRLSSGSDAAAAPGLGNAGVAEFKKENATGTFEVEVGVTGKVSYTARITKCKIEATCKLKLQLAPPGQEPAAVVFQKVKCKLAKAEKNC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.699390 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0250501 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g14740 | RBH | 0.465319 | 0.964113 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0250501 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009110 | RBH | 0.0 | 6.971654 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009270 | RBH | 0.0 | 1.094838 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0009100 | RBH | 0.0 | 12.919066 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008850 | RBH | 0.0 | 0.114872 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009030 | RBH | 0.0 | 8.102678 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0147400 | RBH | 0.4461515 | 33.519512 | 0.1319315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009510 | RBH | 0.0 | 1.052147 | 0.137704 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0148900 | RBH | 0.723568 | 42.1661525 | 0.3807395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041030 | SBH | 0.0 | 0.114576 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009000 | RBH | 0.0 | 3.692629 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008980 | RBH | 0.0 | 38.522301 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009030 | RBH | 0.0 | 5.997580 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G009020 | RBH | 0.0 | 0.858162 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008940 | RBH | 0.0 | 28.963348 | 0.0 |
