Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0008460 | OGI:07023140 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:8379177-8381826 | ||||||||
| Gene Symbol | OsFbox357, Os_F0033 | ||||||||||
| DNA seq | aatccatccccactccccgatccccatcccctccgggctccggcggcgccgtctccgatcgccctcgactgagccggcggagaggctcgaggggagggaccccaccgggggaatccagctcggttcgacctgtcggcggcgggagcggccgccgtccacccatcgcagccggctcgacctggtgagctctaaccctaggtttcttggtcgcaggaaattttgtctggtaatgatgttctactgcgtattatacatcgatgtaatcatctagcgaatgcacgaccgtgttgtgactttagattctactgtgctttagtgtctttgtactattaggctgtgttcgttccagtgacattgggtgagaaagctcctcgttttccgtgcacacgcttcccaaactactaaacggtgcgttttttgcaaaaaaatttctataggaaagttgctttaaaaaatcatattaatccatttttgcaatttaaaatagttaatactcaattaatcatatgctaatggcccacctcgttttgcgtatcttcccaatctctccaatccccttctcctcaaacacacccttagagtagcagtataaattgcaaaattgatagttttccgatcatgaacttttagataaatagcttcttgttattaatggcaaacgatcaaagttacatcggctgtgtggcattggcataagatcgatctttcaacggtctcaaataaaaccaacagaaaaaatgattttacttactacttactgtagtatattacagttcgagttggccgtacaaacatgatctcctctcctgatgctaaatagtactgaatgcttgtaggcttcagaagttcagatatggacacagggcgttcttcccagttgaccgagcgagtacggcgtatgcctgcttcctccaactctggcattctccccctggaggtgctgttcgacgtcctggtgcggctcccggccaaggagctctgccgcctccgcatcgtctgccggccctggcagtcgctggcatctgatccccttttcatgaagacacacgtggctcgccaccgagagacgttcttcttggccagctttaaggatgacgagacgcacatccatatcatggattttgcaggcaatgtgattaagcagataggcataccagctggccacaaggtgttatgcacacgcctcgatctggtttgtgtagccacaaataagaacagctgccatgttcttaatcctgtcactggagatgtctacaacttgccaaagagtccagcagaggagcacatgtaccatgtcaatctgcgcaagcctttcacctcatttgcatttgggcatgttgcctcaacaggagagtacaaggtgctccggatgttcaaccgtcctggatttacggaccttgggatgccacagctttgtgaggtcatcaccgtcaagggtggcacaggccaggcacgttggaggggaaaacagagccgtgagttctttgttgaatgtcaaaaggcaaacagcggtgtcgtggttaatggggtggtgtatttcttgatagacagtgtatatgattcaatgataattggtggtgatggtgccggcattcatccagacttcatctgttcttttgaccttgaggtggaggaatggagggaagatatccagggaccaattagcaggaactttgtatatgacatggacttcccagatgagtatatagcaatttgggatcagcttagtttggctgagctgaaaggctacttagttctagtataccaccagagttaccgatcctcgaccatagacctgtggtatttaatagactatgagacccgcacctggattaaacaatatagcattcaaattgaatcattcgttcctgttagggagtgcaaggtaaagccactgctggtattggatgatgggaggatagtcgtatggctaggatcgaccggactgctactcatatatgatccaagaaccagcacttttgcagaagtggagatgagacgtctttctgaagttggtctgtacacaggaagcgtactgagtttataaaatggtgatgtggtgtagtattgtactccataatgttttgctactctcttcaaatgccagttaatcagcttttagaaatgatctttgggcacaatcattaatatacttggtcggatccttgtgtcttgttgtattggggcctgtaagatcattgtaaattcttgaagatgctatatctctctctcattttgtactgtcttgtgtaaatatagtgttaggtgtgtacttgtcagcatatgtcatctgacattatttagagttgctgcaactttgtatcacagctgctagccagttggttggatacttgggttatgtgtaaaaggatgtggcctgaaaatatttctatattctctgagctcttttcatatgccccattcaggtcaaaatgctcttcctttgttgcatgaaatcactccagtcattaattcagtaaggatggggcatgctcataagcattgcatggtgaatcagaaatgctcttttgaaatcgaattgtcgtgtggaaccctcagaaaaaaaatgtcgtgtggaagtctcgagtctgtaggacctgcttatgtactttatgttgcaccatcttgattgcagctgttaaacttgtaa
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| CDS seq | atggacacagggcgttcttcccagttgaccgagcgagtacggcgtatgcctgcttcctccaactctggcattctccccctggaggtgctgttcgacgtcctggtgcggctcccggccaaggagctctgccgcctccgcatcgtctgccggccctggcagtcgctggcatctgatccccttttcatgaagacacacgtggctcgccaccgagagacgttcttcttggccagctttaaggatgacgagacgcacatccatatcatggattttgcaggcaatgtgattaagcagataggcataccagctggccacaaggtgttatgcacacgcctcgatctggtttgtgtagccacaaataagaacagctgccatgttcttaatcctgtcactggagatgtctacaacttgccaaagagtccagcagaggagcacatgtaccatgtcaatctgcgcaagcctttcacctcatttgcatttgggcatgttgcctcaacaggagagtacaaggtgctccggatgttcaaccgtcctggatttacggaccttgggatgccacagctttgtgaggtcatcaccgtcaagggtggcacaggccaggcacgttggaggggaaaacagagccgtgagttctttgttgaatgtcaaaaggcaaacagcggtgtcgtggttaatggggtggtgtatttcttgatagacagtgtatatgattcaatgataattggtggtgatggtgccggcattcatccagacttcatctgttcttttgaccttgaggtggaggaatggagggaagatatccagggaccaattagcaggaactttgtatatgacatggacttcccagatgagtatatagcaatttgggatcagcttagtttggctgagctgaaaggctacttagttctagtataccaccagagttaccgatcctcgaccatagacctgtggtatttaatagactatgagacccgcacctggattaaacaatatagcattcaaattgaatcattcgttcctgttagggagtgcaaggtaaagccactgctggtattggatgatgggaggatagtcgtatggctaggatcgaccggactgctactcatatatgatccaagaaccagcacttttgcagaagtggagatgagacgtctttctgaagttggtctgtacacaggaagcctgttaaacttgtaa
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| Protein seq | MDTGRSSQLTERVRRMPASSNSGILPLEVLFDVLVRLPAKELCRLRIVCRPWQSLASDPLFMKTHVARHRETFFLASFKDDETHIHIMDFAGNVIKQIGIPAGHKVLCTRLDLVCVATNKNSCHVLNPVTGDVYNLPKSPAEEHMYHVNLRKPFTSFAFGHVASTGEYKVLRMFNRPGFTDLGMPQLCEVITVKGGTGQARWRGKQSREFFVECQKANSGVVVNGVVYFLIDSVYDSMIIGGDGAGIHPDFICSFDLEVEEWREDIQGPISRNFVYDMDFPDEYIAIWDQLSLAELKGYLVLVYHQSYRSSTIDLWYLIDYETRTWIKQYSIQIESFVPVRECKVKPLLVLDDGRIVVWLGSTGLLLIYDPRTSTFAEVEMRRLSEVGLYTGSLLNL |
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| Function | F-box protein At5g18160 [UniProtKB/Swiss-Prot:Q9FK54] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0008460 | OsLima_07g0008460.01 | Chr07 | 8379177 | 8381826 | + | NAM | ||
| CDS seq | atggacacagggcgttcttcccagttgaccgagcgagtacggcgtatgcctgcttcctccaactctggcattctccccctggaggtgctgttcgacgtcctggtgcggctcccggccaaggagctctgccgcctccgcatcgtctgccggccctggcagtcgctggcatctgatccccttttcatgaagacacacgtggctcgccaccgagagacgttcttcttggccagctttaaggatgacgagacgcacatccatatcatggattttgcaggcaatgtgattaagcagataggcataccagctggccacaaggtgttatgcacacgcctcgatctggtttgtgtagccacaaataagaacagctgccatgttcttaatcctgtcactggagatgtctacaacttgccaaagagtccagcagaggagcacatgtaccatgtcaatctgcgcaagcctttcacctcatttgcatttgggcatgttgcctcaacaggagagtacaaggtgctccggatgttcaaccgtcctggatttacggaccttgggatgccacagctttgtgaggtcatcaccgtcaagggtggcacaggccaggcacgttggaggggaaaacagagccgtgagttctttgttgaatgtcaaaaggcaaacagcggtgtcgtggttaatggggtggtgtatttcttgatagacagtgtatatgattcaatgataattggtggtgatggtgccggcattcatccagacttcatctgttcttttgaccttgaggtggaggaatggagggaagatatccagggaccaattagcaggaactttgtatatgacatggacttcccagatgagtatatagcaatttgggatcagcttagtttggctgagctgaaaggctacttagttctagtataccaccagagttaccgatcctcgaccatagacctgtggtatttaatagactatgagacccgcacctggattaaacaatatagcattcaaattgaatcattcgttcctgttagggagtgcaaggtaaagccactgctggtattggatgatgggaggatagtcgtatggctaggatcgaccggactgctactcatatatgatccaagaaccagcacttttgcagaagtggagatgagacgtctttctgaagttggtctgtacacaggaagcctgttaaacttgtaa
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| Protein seq | MDTGRSSQLTERVRRMPASSNSGILPLEVLFDVLVRLPAKELCRLRIVCRPWQSLASDPLFMKTHVARHRETFFLASFKDDETHIHIMDFAGNVIKQIGIPAGHKVLCTRLDLVCVATNKNSCHVLNPVTGDVYNLPKSPAEEHMYHVNLRKPFTSFAFGHVASTGEYKVLRMFNRPGFTDLGMPQLCEVITVKGGTGQARWRGKQSREFFVECQKANSGVVVNGVVYFLIDSVYDSMIIGGDGAGIHPDFICSFDLEVEEWREDIQGPISRNFVYDMDFPDEYIAIWDQLSLAELKGYLVLVYHQSYRSSTIDLWYLIDYETRTWIKQYSIQIESFVPVRECKVKPLLVLDDGRIVVWLGSTGLLLIYDPRTSTFAEVEMRRLSEVGLYTGSLLNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.139524 | 0.232494 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0242600 | RBH | 0.248297 | 0.940872 | 1.201920 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g13890 | RBH | 0.165810 | 0.624896 | 0.305526 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0242600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008620 | RBH | 0.452599 | 2.237109 | 3.493425 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008740 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008560 | RBH | 0.474722 | 5.697286 | 1.411121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008360 | RBH | 0.060796 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0008500 | RBH | 2.256111 | 0.000000 | 9.873480 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0137600 | RBH | 2.8031125 | 7.569969 | 9.9735495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008990 | RBH | 0.000000 | 0.114847 | 0.401715 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0139300 | RBH | 2.6939755 | 6.861103 | 9.538466 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008480 | RBH | 0.366401 | 2.170286 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008470 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0008650 | RBH | 0.0 | 0.000000 | 0.490643 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0008530 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008530 | RBH | 0.815181 | 0.413351 | 1.493058 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008440 | RBH | 0.539135 | 0.0 | 2.226078 |
