Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0008280 | OGI:07022240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:8124862-8130870 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggagaggcgagagagcggaggacggagagggatccggcaagatgggagtcctggcgttctaccggtggctggcggaccggtacccgcagacggtgtcggacgcggtggaggaggagcccgtggagctcgagcctggctccttcgtccccgtcgacctccgccgccccaaccccaacggcctcaagttctacaacctctacctcgacatgaacggcatcatccacccctgcttccaccccgagggccacgcacgatcctattcccccatcccctctgtcttctcgtcttctaatcaacccattctgtgttcgatctcaccatggatttggactccctctcctgcagccggcaccgaccacttacgacgaggtgttcaagtcgattacttttgcatataagtaaatctttctttgtttttaattcactggtttgattctctgttttttttttgggatcatgtttaggttcttgttggatttggtactgatctcgttaggtttcttggcccgttttcaggtgcggctctgaaggggaatttcgtcgaacaagatgaatgcgttgccaggaacttcaagcaggcggccaaactgctgggcctggactccaagctggagaagaacttgctcatcccattcagggagatcaaggtgatgattctagcgcagttttcttgggatatggtaatctgttttctttggcttgacttgctcgaagtagttttctgatgaacatgagagagagtgttgaaagttcttgctgcgaccaggttcaatggagtaaaggattttctttttggtttggagtgccaacaagtctgtggttgattgcaggttgaatgcacagttccgaaagatgatgggacttaagcatcttacatgttgggtttagggtttaacatgacaatgttaggggacctatgaagggtggaatcagataccgccatgaggtgagaatattgattgattagtgtgttcttcgtaatacaagctggtgcctagctatgattgagtgaaaatttatattagttgaactcagttttctgggttaataatttctctggtagtacaagcattaagattcaatgaaaacatcagatgctgatcagatttcacctttggatgcaatctatttctaattttctacttctgtgttagtaaaacttatataagttatattaccatttacttgcaacaatctatcaatatcagacctgaaattgttcaagcttgtctcttcagttccagctgcacattttttttgtatgggctttactgatgatgaactccggtcacacaattgtaggatggtgaaaaaaagcctatattctgctgttagacaattcataattaggtaagggaatttggtaaagagtacaatttactctgcaagaaacatagatttatgcttgctaatcccagtagatcatcgagccatcactttcttttacagtagtaacttcgctcaagaaaatgtttgccttttaaaggaaaagggataattttactctaccaccttgccagggccagagttgtgtgcttgtataggttaaagtcagtttcttttgcaggaaaatgctatgcctttactctctttcctaaaaaatcggttttgggttatgctgttacagtttctttccatatttctttttagatgttggggcctgtgtcccaactgcatgaagatttcatgcagaacatttaaacaagtagcaaagcttctgtctggccatttttagacaagttgatacatcaatgatataattctttctcaatattttgtggttcaggaatttgatattttaggccaccgactgggtcttcgacaccacagaggaccgcgcctgccaaggtgattattgccttgtttaacctctcagcaaggtggattatttttaatcaatccaaacatggcattgcggtgatttctcgtgggatccatgcgccatccagattatgttgcgcagtagtagagtttgcaagaattatttatttgttaacatatacgtgccaaacaattccacccaaaagccttaatctgtgaaaagaggttgggtaatctactcaatacttaacaactaatatgctgcactgtttatgttaatctgtagcttggatgaatctgatgtaacatattctgagtgcttgggtacagtaattatcactatgtactagacaatacattttgaccatgcgaaggtatgtggaaggtgttatcgcttttttttttcagttatcagtggaacttttactttttaaccgttgtactgtaagccacttcaatacaggccatcatatacaactagggagcacgttttcttgtgtgctactgacaaataaaatacaaagtacatttcaatgagatttgtttacagcttataagtgatgttctttgttttacaccatttttagtcatcgtacaaaattaggctgaaattgttcttaatgctattcttttcagcacaaaagtccttgttgctactgtgcatgaagatctttcctctctggctcttcctgtccattgccctcggtgttataaagttaccatttgatatttctggtctgggtaatctcctaatgtaaggtgttagtttgttctattattctattctcgattatacaagctgtggctttaaagaaatagcagtagatatgatatggaccattgaggtcacttccataaacttggatctgggtgtgcaacatttgtcagtacaccattgccctcggtgttataaagttaccatttgatatttctttgatctgatcaaacaaatcttaatccttctttcatagcaccagcactgttgcatcttttgcctaaacatattatgttattacgctgtcacactgttgcttgtcctctatgtattgtccctaacaaattttgctgtaaacatgtcctgtcaatagtcatagccatcactaacaagtgagctacgtatctatttatttcagtacaccaaattatgtgctattatgatgttgcgctacaacatcacaattgcacatcctcaaactctgctttaatgctctaaatatactctgttaacaaggatatccatcgctattattagctgctaatgaatgaattgtatccaggcggcgcgccaacggcgcgccccaggctctagtactccgaatttttttcatataataattaataacctcaaagttaaataaatagtaaattcgaatcagtaattagaaaaataggaaggacgttgggagcaacaacgtctcaagtggacgctggagagacgacgtcctttaatggacgctgtaggctagcacgtccatctagctgatcccagcctagcccaagaactcatgctgcaaaggcccaagtaaagttcctccaaacaaaaacgggagaaaaaaatggcttgcctcacctgtgcgtgtgcgtcgtctggagagcgctcacccttctccacttctgtcctcattcgcgcggcaagccggcggcggcgcgacgcccctctcctctgcgcccctatccgtttctgtgtatggttccagcctggtccctaggtgaatcctagcttccgattccctctgccactgccgccgcacaggtataatcgaagaccccttcccctgctgctgccgccgccgccgccctccaatccctttctgcaaggccttgcatctccggtgcccttgactgctcctgcccctgttgctatttgattccatattgtaatgcagaaatactagattaatattatttataaattagaatgcaacccagtctattgtgtttatcaaatacagctagataagatggccaccaatgatcggttcagtgatttgttatggatgcctcattgtcagcataaagtttccaaaatatgggatagtgtgagttgctagattttttttttttacgttattcgtccattgtgtgtaaaacttcaaacagactgtatggtttgactaattgatgaaatgtatttttacagcctactaattgcattaacatacggcttcatcgtgtcggcattccttaccactcattatgtcagacagctttagagaatcttgggttctttcagattgcacggatgaaggaaatcaataatgataaatatttgatatcagcactggtggagagctggcgacctaaaaccaacacttttcacttaccagtgggtgagatgacaattacgctacaagatgtaagttgcttatggggtttacctatccatggtagactaattactggccaagctgatggctcatgggttgatatgattgaacggttgcttggaattcctatggaagaacaacacatgaagcagaaaaaaaggaaaaaagaggatgatatgactatggtgagttactcgcggtactccatcagcttaagcaagttgcgtgaccgctttcgtgtaatgccaaagaacgcaacagaacgtgagattaactggtatactcgagcacttgttcttgatattattgggtccatggtttttactgatacatctggagatggtgtacctgcaatgtacctccaatttatggtgaacttaagtgaacaaacagagtacaattggggggctgctgcactttccatgttatatagacagttaagcatagcatctgagaaggagagagctgaaatatctagacctttattgttacagcagttgtggtcttggtcacgattgccacttggtcgacctgttaaggcaatgaaaatcacgaaagaaagggaagaagaagatgaacaggaggaattggactattgccctgtatttggagcaaagtggtgtctctcacatgaatttcgtgccccacataatgcgggtactatttctattttgattatatcatatgtcccaattatggtttttttcttggtgtacttgtctacttatcctatagtaatgttatgcaggtactgaatattaccgaagtcaaattgatctgattcgagaaggagtaattgtttggcagtaaccttatggatgaaatgcccatccaaattcgtaatgatcgtgcttggtggtttgctagattgcccctaattcatttctggattgtagagttccactacttagatagggtgatgcgccaatttggtcgtcgatagaacattccacctcatcctccatatggcaaggttgagcaccgcaaactatgtaaaatcaaacatggaggaaaaatgcgcagttgggagatagtacatgctaaatatatacaccaatatgacaatttggaagcagtaatggtccaagaggaccaaccttttgatccagctagcttgccagagtatagacgttggttccaacaaaatggtatgtatagtgttttttcgatgctcagtgcttgggagttcttgaaaacccaatcccatatccccgggacatatttgaatggacaggctacatgcccagtggtccaccactagcacgaattgtaagttattttgtacaatccatagtaaacttttgctgccattttggttcaaactacaatactcttttttttttctaaatgcagagcttacatgtgataaagaatgctgcttgggggatcaaatgtgcaattactaatagctgtaagaagttaggcaagtcaatactcaggacatgcttgggtaatttgagagatctaaacctagagcctaggttgcaaaatatgctcactgatgctgggttgccaatcaatattgaagatattccgtctgatgatgatctctcagctcatgttcaccacccaagtcctccgaaagactctaattctgatatatttgatgaatgggtgtactcaggaagaggttttgaaagatatctccatgcaggtgggatagctgcaacacaagacctaggccaagtgacacagatagatgagtagagctgtaggtttgagattctttcgatgtgtgagttgctaagatagtggtccatgggttgtaatagtgaaaactacagcttgttaacaacgtgcttgttttagataaattattatactactcctaggttgcagctctaaagttcagtttgtgtcg
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| CDS seq | atgggagtcctggcgttctaccggtggctggcggaccggtacccgcagacggtgtcggacgcggtggaggaggagcccgtggagctcgagcctggctccttcgtccccgtcgacctccgccgccccaaccccaacggcctcaagttctacaacctctacctcgacatgaacggcatcatccacccctgcttccaccccgagggccacgcacgatcctattcccccatcccctctgtcttctcgtcttctaatcaacccattctgtgttcgatctcaccatggatttggactccctctcctgcagccggcaccgaccacttacgacgaggtgcggctctgaaggggaatttcgtcgaacaagatgaatgcgttgccaggaacttcaagcaggcggccaaactgctgggcctggactccaagctggagaagaacttgctcatcccattcagggagatcaaggtgatgattctagcgcagttttcttgggatatggccaccgactgggtcttcgacaccacagaggaccgcgcctgccaagcacaaaagtccttgttgctactgtgcatgaagatctttcctctctggctcttcctgtccattgccctcggtgttataaagttaccatttgatatttctggtctgggtaatctcctaatcttaagcaagttgcgtgaccgctttcgtgtaatgccaaagaacgcaacagaacgtgagattaactggtatactcgagcacttgttcttgatattattgggtccatggtttttactgatacatctggagatggtgtacctgcaatgtacctccaatttatgtgcttgggagttcttgaaaacccaatcccatatccccgggacatatttgaatggacaggctacatgcccagtggtccaccactagcacgaattagcttacatgtgataaagaatgctgcttgggggatcaaatgtgcaattactaatagctgtaagaagttaggcaagtcaatactcaggacatgcttgggtaatttgagagatctaaacctagagcctaggttgcaaaatatgctcactgatgctgggttgccaatcaatattgaagatattccgtctgatgatgatctctcagctcatgttcaccacccaagtcctccgaaagactctaattctgatatatttgatgaatgggtgtactcaggaagaggttttgaaagatatctccatgcaggtgggatagctgcaacacaagacctaggccaagtgacacagatagatgagtag
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| Protein seq | MGVLAFYRWLADRYPQTVSDAVEEEPVELEPGSFVPVDLRRPNPNGLKFYNLYLDMNGIIHPCFHPEGHARSYSPIPSVFSSSNQPILCSISPWIWTPSPAAGTDHLRRGAALKGNFVEQDECVARNFKQAAKLLGLDSKLEKNLLIPFREIKVMILAQFSWDMATDWVFDTTEDRACQAQKSLLLLCMKIFPLWLFLSIALGVIKLPFDISGLGNLLILSKLRDRFRVMPKNATEREINWYTRALVLDIIGSMVFTDTSGDGVPAMYLQFMCLGVLENPIPYPRDIFEWTGYMPSGPPLARISLHVIKNAAWGIKCAITNSCKKLGKSILRTCLGNLRDLNLEPRLQNMLTDAGLPINIEDIPSDDDLSAHVHHPSPPKDSNSDIFDEWVYSGRGFERYLHAGGIAATQDLGQVTQIDE |
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| Function | 5'-3' exoribonuclease 4 [UniProtKB/Swiss-Prot:Q9FQ04] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0008280 | OsLima_07g0008280.01 | Chr07 | 8124862 | 8130870 | + | NAM | ||
| CDS seq | atgggagtcctggcgttctaccggtggctggcggaccggtacccgcagacggtgtcggacgcggtggaggaggagcccgtggagctcgagcctggctccttcgtccccgtcgacctccgccgccccaaccccaacggcctcaagttctacaacctctacctcgacatgaacggcatcatccacccctgcttccaccccgagggccacgcacgatcctattcccccatcccctctgtcttctcgtcttctaatcaacccattctgtgttcgatctcaccatggatttggactccctctcctgcagccggcaccgaccacttacgacgaggtgcggctctgaaggggaatttcgtcgaacaagatgaatgcgttgccaggaacttcaagcaggcggccaaactgctgggcctggactccaagctggagaagaacttgctcatcccattcagggagatcaaggtgatgattctagcgcagttttcttgggatatggccaccgactgggtcttcgacaccacagaggaccgcgcctgccaagcacaaaagtccttgttgctactgtgcatgaagatctttcctctctggctcttcctgtccattgccctcggtgttataaagttaccatttgatatttctggtctgggtaatctcctaatcttaagcaagttgcgtgaccgctttcgtgtaatgccaaagaacgcaacagaacgtgagattaactggtatactcgagcacttgttcttgatattattgggtccatggtttttactgatacatctggagatggtgtacctgcaatgtacctccaatttatgtgcttgggagttcttgaaaacccaatcccatatccccgggacatatttgaatggacaggctacatgcccagtggtccaccactagcacgaattagcttacatgtgataaagaatgctgcttgggggatcaaatgtgcaattactaatagctgtaagaagttaggcaagtcaatactcaggacatgcttgggtaatttgagagatctaaacctagagcctaggttgcaaaatatgctcactgatgctgggttgccaatcaatattgaagatattccgtctgatgatgatctctcagctcatgttcaccacccaagtcctccgaaagactctaattctgatatatttgatgaatgggtgtactcaggaagaggttttgaaagatatctccatgcaggtgggatagctgcaacacaagacctaggccaagtgacacagatagatgagtag
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| Protein seq | MGVLAFYRWLADRYPQTVSDAVEEEPVELEPGSFVPVDLRRPNPNGLKFYNLYLDMNGIIHPCFHPEGHARSYSPIPSVFSSSNQPILCSISPWIWTPSPAAGTDHLRRGAALKGNFVEQDECVARNFKQAAKLLGLDSKLEKNLLIPFREIKVMILAQFSWDMATDWVFDTTEDRACQAQKSLLLLCMKIFPLWLFLSIALGVIKLPFDISGLGNLLILSKLRDRFRVMPKNATEREINWYTRALVLDIIGSMVFTDTSGDGVPAMYLQFMCLGVLENPIPYPRDIFEWTGYMPSGPPLARISLHVIKNAAWGIKCAITNSCKKLGKSILRTCLGNLRDLNLEPRLQNMLTDAGLPINIEDIPSDDDLSAHVHHPSPPKDSNSDIFDEWVYSGRGFERYLHAGGIAATQDLGQVTQIDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.013201 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0238700 | RBH | 1.995913 | 2.663268 | 2.526242 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g13460 | RBH | 0.518265 | 0.444679 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0238700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008430 | RBH | 0.314358 | 0.475498 | 7.263524 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008530 | RBH | 0.673267 | 3.165091 | 10.221823 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008370 | RBH | 3.675916 | 0.756386 | 15.600421 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008190 | RBH | 0.146922 | 0.160384 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0008310 | RBH | 3.084841 | 0.807819 | 7.139414 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0132500 | RBH | 1.702027 | 4.9289845 | 5.492774 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008800 | RBH | 0.067446 | 0.060799 | 0.554623 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0133000 | RBH | 1.747234 | 5.710652 | 8.4606585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008290 | RBH | 0.315658 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008280 | RBH | 4.039322 | 3.099271 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0008460 | RBH | 0.715568 | 0.000000 | 2.418840 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0008350 | RBH | 0.262044 | 0.961778 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008360 | RBH | 0.048891 | 1.468934 | 0.695894 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008250 | RBH | 7.330309 | 7.286154 | 4.046981 |
