Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0007130 | OGI:07017480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:6462814-6463857 | ||||||||
| Gene Symbol | IPT5, OsIPT5 | ||||||||||
| DNA seq | atggccacgtcactatccttggcgcccaaacccgccgccgtcgccgtcgccgccgccgccatcccgaggcttgttccgccgccgtctatcgacatgtcggcgctgtcgccgccgccgccgctcgtcagcgtcagcaggagcatggtagcgaagcacaaggccgtggttgtgatgggcgcgacggggacggggaagacgcggctcgccgtcgacctcgcgctccagttcggcggcgaggtgatcaacgccgacaagctgcagctgcaccgggggctcgacgtggccaccaacaaggccaccgccgacgagcgcgccggcgtgccgcaccacctgatcggggtggcgcacccggacgaggagttcacggccgcggacttccgccgcgccgcgtcgcgcgccgccgccgcggtcgccgcgcgcggcgcgctgcccatcatcgccggcggctccaactcctacatcgaggagctcgtcgacggcgaccgccgcgcgttccgcgaccggtacgactgctgcttcctgtgggtggacgtgcagctccccgtgctccacggcttcgtcggccgccgcgtcgacgacatgtgcggccgcgggatggtcgccgagatcgaggcggcgttcgacccggaccgcaccgactactcccgcggcgtctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcgtgcgccgccgccggcggcgaggaggaacgcgcgcggctgctggccaatgccatcgaggacatcaaggcgaacacccgctggctgtcgtgccggcagcgcgccaagatcgtgaggctagaccgcctatggcgaatccgccgcgtggacgccacggaggcgttccggcggcgcggcggcgccgccaacgaggcgtgggagcggcacgtcgccgcgccgagcattgacaccgtgcgatccttcctccacggcgaattcaccaccgccgccgaaactacggcggcgccggtgccgccaccgccgttcctccccatgtttgctctcgccgcggcgggcgccggcgtctaa
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| CDS seq | atggccacgtcactatccttggcgcccaaacccgccgccgtcgccgtcgccgccgccgccatcccgaggcttgttccgccgccgtctatcgacatgtcggcgctgtcgccgccgccgccgctcgtcagcgtcagcaggagcatggtagcgaagcacaaggccgtggttgtgatgggcgcgacggggacggggaagacgcggctcgccgtcgacctcgcgctccagttcggcggcgaggtgatcaacgccgacaagctgcagctgcaccgggggctcgacgtggccaccaacaaggccaccgccgacgagcgcgccggcgtgccgcaccacctgatcggggtggcgcacccggacgaggagttcacggccgcggacttccgccgcgccgcgtcgcgcgccgccgccgcggtcgccgcgcgcggcgcgctgcccatcatcgccggcggctccaactcctacatcgaggagctcgtcgacggcgaccgccgcgcgttccgcgaccggtacgactgctgcttcctgtgggtggacgtgcagctccccgtgctccacggcttcgtcggccgccgcgtcgacgacatgtgcggccgcgggatggtcgccgagatcgaggcggcgttcgacccggaccgcaccgactactcccgcggcgtctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcgtgcgccgccgccggcggcgaggaggaacgcgcgcggctgctggccaatgccatcgaggacatcaaggcgaacacccgctggctgtcgtgccggcagcgcgccaagatcgtgaggctagaccgcctatggcgaatccgccgcgtggacgccacggaggcgttccggcggcgcggcggcgccgccaacgaggcgtgggagcggcacgtcgccgcgccgagcattgacaccgtgcgatccttcctccacggcgaattcaccaccgccgccgaaactacggcggcgccggtgccgccaccgccgttcctccccatgtttgctctcgccgcggcgggcgccggcgtctaa
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| Protein seq | MATSLSLAPKPAAVAVAAAAIPRLVPPPSIDMSALSPPPPLVSVSRSMVAKHKAVVVMGATGTGKTRLAVDLALQFGGEVINADKLQLHRGLDVATNKATADERAGVPHHLIGVAHPDEEFTAADFRRAASRAAAAVAARGALPIIAGGSNSYIEELVDGDRRAFRDRYDCCFLWVDVQLPVLHGFVGRRVDDMCGRGMVAEIEAAFDPDRTDYSRGVWRAIGVPELDAYLRSCAAAGGEEERARLLANAIEDIKANTRWLSCRQRAKIVRLDRLWRIRRVDATEAFRRRGGAANEAWERHVAAPSIDTVRSFLHGEFTTAAETTAAPVPPPPFLPMFALAAAGAGV |
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| Function | Adenylate isopentenyltransferase 3, chloroplastic [UniProtKB/Swiss-Prot:Q93WC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0007130 | OsLima_07g0007130.01 | Chr07 | 6462814 | 6463857 | + | NAM | ||
| CDS seq | atggccacgtcactatccttggcgcccaaacccgccgccgtcgccgtcgccgccgccgccatcccgaggcttgttccgccgccgtctatcgacatgtcggcgctgtcgccgccgccgccgctcgtcagcgtcagcaggagcatggtagcgaagcacaaggccgtggttgtgatgggcgcgacggggacggggaagacgcggctcgccgtcgacctcgcgctccagttcggcggcgaggtgatcaacgccgacaagctgcagctgcaccgggggctcgacgtggccaccaacaaggccaccgccgacgagcgcgccggcgtgccgcaccacctgatcggggtggcgcacccggacgaggagttcacggccgcggacttccgccgcgccgcgtcgcgcgccgccgccgcggtcgccgcgcgcggcgcgctgcccatcatcgccggcggctccaactcctacatcgaggagctcgtcgacggcgaccgccgcgcgttccgcgaccggtacgactgctgcttcctgtgggtggacgtgcagctccccgtgctccacggcttcgtcggccgccgcgtcgacgacatgtgcggccgcgggatggtcgccgagatcgaggcggcgttcgacccggaccgcaccgactactcccgcggcgtctggcgcgccatcggcgtgccggagctcgacgcgtacctccgctcgtgcgccgccgccggcggcgaggaggaacgcgcgcggctgctggccaatgccatcgaggacatcaaggcgaacacccgctggctgtcgtgccggcagcgcgccaagatcgtgaggctagaccgcctatggcgaatccgccgcgtggacgccacggaggcgttccggcggcgcggcggcgccgccaacgaggcgtgggagcggcacgtcgccgcgccgagcattgacaccgtgcgatccttcctccacggcgaattcaccaccgccgccgaaactacggcggcgccggtgccgccaccgccgttcctccccatgtttgctctcgccgcggcgggcgccggcgtctaa
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| Protein seq | MATSLSLAPKPAAVAVAAAAIPRLVPPPSIDMSALSPPPPLVSVSRSMVAKHKAVVVMGATGTGKTRLAVDLALQFGGEVINADKLQLHRGLDVATNKATADERAGVPHHLIGVAHPDEEFTAADFRRAASRAAAAVAARGALPIIAGGSNSYIEELVDGDRRAFRDRYDCCFLWVDVQLPVLHGFVGRRVDDMCGRGMVAEIEAAFDPDRTDYSRGVWRAIGVPELDAYLRSCAAAGGEEERARLLANAIEDIKANTRWLSCRQRAKIVRLDRLWRIRRVDATEAFRRRGGAANEAWERHVAAPSIDTVRSFLHGEFTTAAETTAAPVPPPPFLPMFALAAAGAGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.116388 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0211700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g11050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0211700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0007190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0007170 | RBH | 0.0 | 2.005590 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0007050 | RBH | 0.0 | 4.186147 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0007000 | RBH | 0.0 | 0.038166 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0007160 | RBH | 0.0 | 9.911735 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0103300 | RBH | 0 | 4.654566 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0007640 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0104400 | RBH | 0.0036375 | 3.8909025 | 0.0154605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039100 | RBH | 0.039232 | 0.033941 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0007130 | RBH | 0.0 | 1.054002 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0007160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0007360 | RBH | 0.0 | 0.311955 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0007120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G007250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0007140 | RBH | 0.0 | 3.786447 | 0.0 |
