Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0005790 | OGI:07014380 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:5224900-5226875 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctctcgctcgccgcctcctccctcccctccacgcggacccaccgcccggacgccgcctcgcactcctcctcctcctccgtccgcctcctccgctcgctcgcacggtcccgccgcgcggacctcgcgcaccgggcgctcctgctcttccgctcgctccagtccaccccgtccccgccgccgccgcacgtctcgctgccggccgtgctctccgcggcggccttcctctcggcgctccccgagggacgccagctgcacgcgctcgccgccaagctcggactcgccccgtcccacaccgtcgtcgccaactcgctcctccacctctactcctcctgcggcctcccgggcgccgcgctcgacctcttccgccgcatccccgacaggtcgctcgtgtcgtggaacaccgccgtcgacgccctcgtcgggaacggcgaccacctcgccgcgctcgacctcttccgggagatgcagcgggacacggagctcgcgcccgacgcgtacaccgtgcagagcgtcctcggcgcgtgcgccggcgccggcgcgctctcgctcggcgtctacgcgcacgcgttgctgctcagggagctcgggggtgacggcgacggcgaggcggtgtcccgcgacatgctgatcaacaactcgctggtggatctgtacgggaagtgcggggcgctggagctcgcgcagcaggtgttcgacagaatgcccgcgcgggacctcgcgtcttggaacgtgatgatcctcacgctggccaaccacggtcgtgtctgtgagtcggtggagctgttcgatcggatgactcaggtggagaagatggctccgaatgccatcacgttcgtcgcggtgctcagcgcgtgcaaccatggtgggctagtggaggagggcaggagatattttgcaatgatggttgatcagtacagaatcaagcctaggatcgaacactatgggtgcatggtcgatctcttggcacgagcagggttcatcgaggaagctctcgatatcgtggctggaatgaactgtcggcccgacgccatcatctggagaagcctacttgatgcatgctgcaagaagaatgccggattggagcttactgaggccatggccaagctagcactggaggttcctgatgatgctgtgagcggtgtgtatgtattgctttcgagggtttatgcatccgcgcagcggtggaacgatgtgggcatggtgcggcggttgatggtggaagagggcgtcaagaaggagccagggttcagttccattgaaatggatggcttggttcatcagttcgtcgcgggcgatacttcgcatccacaatctgaggcgatatatgaaaaactggatgaaattcagctgaagctcacatctgctggatacaagccagatttatcagaggctcctttggttgctagtattgacaatgccaagggcgccgccctccggttgcacagcgagcgtctggccatatcgtttggtctgctcaacgcgacgcctggggcacctatccggattctgaagaacctgagagtttgcaaggactgtcacacaatcagcaagctcatatcgaagctctatggcgtggagatcatcgtgagggatcgaattcgattccatcatttcaaggatgggtcatgttcttgcaaagattactggtgatcacatcatgagccataacgtctgatgctaccagtagagatccctttggtgtgttagaagcgcctcttgcctccaagccaaggtgaaatgggatgttcaatgctgactacagcctttcatattttttttctaggacagatgaacattagcagattgattagagaaacaggacattgtataatatattcaatctcattttcttcttgagccatcaaggtaaatattctaattactctgaatcacgactgtgtctatatgaacaactatgtctatatgaacaactatgttcacttcatcttgcagaaaaatctgagataaatgac
More
|
||||||||||
| CDS seq | atgctctcgctcgccgcctcctccctcccctccacgcggacccaccgcccggacgccgcctcgcactcctcctcctcctccgtccgcctcctccgctcgctcgcacggtcccgccgcgcggacctcgcgcaccgggcgctcctgctcttccgctcgctccagtccaccccgtccccgccgccgccgcacgtctcgctgccggccgtgctctccgcggcggccttcctctcggcgctccccgagggacgccagctgcacgcgctcgccgccaagctcggactcgccccgtcccacaccgtcgtcgccaactcgctcctccacctctactcctcctgcggcctcccgggcgccgcgctcgacctcttccgccgcatccccgacaggtcgctcgtgtcgtggaacaccgccgtcgacgccctcgtcgggaacggcgaccacctcgccgcgctcgacctcttccgggagatgcagcgggacacggagctcgcgcccgacgcgtacaccgtgcagagcgtcctcggcgcgtgcgccggcgccggcgcgctctcgctcggcgtctacgcgcacgcgttgctgctcagggagctcgggggtgacggcgacggcgaggcggtgtcccgcgacatgctgatcaacaactcgctggtggatctgtacgggaagtgcggggcgctggagctcgcgcagcaggtgttcgacagaatgcccgcgcgggacctcgcgtcttggaacgtgatgatcctcacgctggccaaccacggtcgtgtctgtgagtcggtggagctgttcgatcggatgactcaggtggagaagatggctccgaatgccatcacgttcgtcgcggtgctcagcgcgtgcaaccatggtgggctagtggaggagggcaggagatattttgcaatgatggttgatcagtacagaatcaagcctaggatcgaacactatgggtgcatggtcgatctcttggcacgagcagggttcatcgaggaagctctcgatatcgtggctggaatgaactgtcggcccgacgccatcatctggagaagcctacttgatgcatgctgcaagaagaatgccggattggagcttactgaggccatggccaagctagcactggaggttcctgatgatgctgtgagcggtgtgtatgtattgctttcgagggtttatgcatccgcgcagcggtggaacgatgtgggcatggtgcggcggttgatggtggaagagggcgtcaagaaggagccagggttcagttccattgaaatggatggcttggttcatcagttcgtcgcgggcgatacttcgcatccacaatctgaggcgatatatgaaaaactggatgaaattcagctgaagctcacatctgctggatacaagccagatttatcagaggctcctttggttgctagtattgacaatgccaagggcgccgccctccggttgcacagcgagcgtctggccatatcgtttggtctgctcaacgcgacgcctggggcacctatccggattctgaagaacctgagagtttgcaaggactgtcacacaatcagcaagctcatatcgaagctctatggcgtggagatcatcgtgagggatcgaattcgattccatcatttcaaggatgggtcatgttcttgcaaagattactggtga
More
|
||||||||||
| Protein seq | MLSLAASSLPSTRTHRPDAASHSSSSSVRLLRSLARSRRADLAHRALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSHTVVANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAGFIEEALDIVAGMNCRPDAIIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLLSRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKLDEIQLKLTSAGYKPDLSEAPLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLISKLYGVEIIVRDRIRFHHFKDGSCSCKDYW |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [UniProtKB/Swiss-Prot:Q0WQW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0005790 | OsLima_07g0005790.01 | Chr07 | 5224900 | 5226875 | + | NAM | ||
| CDS seq | atgctctcgctcgccgcctcctccctcccctccacgcggacccaccgcccggacgccgcctcgcactcctcctcctcctccgtccgcctcctccgctcgctcgcacggtcccgccgcgcggacctcgcgcaccgggcgctcctgctcttccgctcgctccagtccaccccgtccccgccgccgccgcacgtctcgctgccggccgtgctctccgcggcggccttcctctcggcgctccccgagggacgccagctgcacgcgctcgccgccaagctcggactcgccccgtcccacaccgtcgtcgccaactcgctcctccacctctactcctcctgcggcctcccgggcgccgcgctcgacctcttccgccgcatccccgacaggtcgctcgtgtcgtggaacaccgccgtcgacgccctcgtcgggaacggcgaccacctcgccgcgctcgacctcttccgggagatgcagcgggacacggagctcgcgcccgacgcgtacaccgtgcagagcgtcctcggcgcgtgcgccggcgccggcgcgctctcgctcggcgtctacgcgcacgcgttgctgctcagggagctcgggggtgacggcgacggcgaggcggtgtcccgcgacatgctgatcaacaactcgctggtggatctgtacgggaagtgcggggcgctggagctcgcgcagcaggtgttcgacagaatgcccgcgcgggacctcgcgtcttggaacgtgatgatcctcacgctggccaaccacggtcgtgtctgtgagtcggtggagctgttcgatcggatgactcaggtggagaagatggctccgaatgccatcacgttcgtcgcggtgctcagcgcgtgcaaccatggtgggctagtggaggagggcaggagatattttgcaatgatggttgatcagtacagaatcaagcctaggatcgaacactatgggtgcatggtcgatctcttggcacgagcagggttcatcgaggaagctctcgatatcgtggctggaatgaactgtcggcccgacgccatcatctggagaagcctacttgatgcatgctgcaagaagaatgccggattggagcttactgaggccatggccaagctagcactggaggttcctgatgatgctgtgagcggtgtgtatgtattgctttcgagggtttatgcatccgcgcagcggtggaacgatgtgggcatggtgcggcggttgatggtggaagagggcgtcaagaaggagccagggttcagttccattgaaatggatggcttggttcatcagttcgtcgcgggcgatacttcgcatccacaatctgaggcgatatatgaaaaactggatgaaattcagctgaagctcacatctgctggatacaagccagatttatcagaggctcctttggttgctagtattgacaatgccaagggcgccgccctccggttgcacagcgagcgtctggccatatcgtttggtctgctcaacgcgacgcctggggcacctatccggattctgaagaacctgagagtttgcaaggactgtcacacaatcagcaagctcatatcgaagctctatggcgtggagatcatcgtgagggatcgaattcgattccatcatttcaaggatgggtcatgttcttgcaaagattactggtga
More
|
|||||||
| Protein seq | MLSLAASSLPSTRTHRPDAASHSSSSSVRLLRSLARSRRADLAHRALLLFRSLQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSHTVVANSLLHLYSSCGLPGAALDLFRRIPDRSLVSWNTAVDALVGNGDHLAALDLFREMQRDTELAPDAYTVQSVLGACAGAGALSLGVYAHALLLRELGGDGDGEAVSRDMLINNSLVDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPNAITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLARAGFIEEALDIVAGMNCRPDAIIWRSLLDACCKKNAGLELTEAMAKLALEVPDDAVSGVYVLLSRVYASAQRWNDVGMVRRLMVEEGVKKEPGFSSIEMDGLVHQFVAGDTSHPQSEAIYEKLDEIQLKLTSAGYKPDLSEAPLVASIDNAKGAALRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLISKLYGVEIIVRDRIRFHHFKDGSCSCKDYW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.272375 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0191500 | RBH | 3.449057 | 4.163008 | 0.435293 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g09370 | RBH | 2.327804 | 2.794415 | 0.112587 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0191500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005900 | RBH | 0.538002 | 0.0 | 0.622382 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005860 | RBH | 0.062095 | 0.0 | 0.309448 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005770 | RBH | 0.965960 | 0.0 | 0.962817 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005690 | RBH | 0.137377 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005850 | RBH | 6.333737 | 0.0 | 1.122898 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0056100 | SBH | 0.6124985 | 0.9787955 | 0.314627 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006360 | RBH | 0.228451 | 0.0 | 0.247212 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0085200 | SBH | 1.6944165 | 0.7820415 | 1.0715035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005790 | RBH | 0.446907 | 1.477448 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005830 | RBH | 2.972534 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005960 | RBH | 0.841159 | 0.0 | 0.349926 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005800 | RBH | 0.627376 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005980 | RBH | 0.343585 | 0.0 | 0.332873 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005780 | RBH | 2.164588 | 0.0 | 1.377130 |
