Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0004880 | OGI:07012430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:4427533-4430044 | ||||||||
| Gene Symbol | OsVTE3 | ||||||||||
| DNA seq | tcagatcccttaaatattgcctcatttttatttttgacggttcataaaaccaacaagggaacaaatgaagcaagctagagaacaaagcatgccatcagcacccacaacacaacatgaacacgaacattagaccattggagtgttcagtgcctaacatgtaacagaagcttaacacaacacaactttccctgtcattttgtctgacattgcttggcaacttggcatcaggtaacagttaaatgggcttggtcctttgggacaatctgttctttgatccacatggagacaggtaccagcacaagtaagaagcacagatcatttcgttttgttggcattgcttggcatcaggaaacagttaaattggttggtccttggggacaatctgatctttcatccacatgtagataggtaccagcacataataagaagcgcaaatcgtccccatgacgaagcggaagatgaaggtgaaaggattcactggtttctcaacatcttcagcctttggaccaagctgcaacaagaacaaaaggtgaaaaaccagataacaaagcacatcagtgtgagctagcatgacacagaactcaggtgtgttagactcactgttaacaaatttaggtgctcttaacatttgatgtttgtaacaagaaagcaattctgagttaatatgaagctagaacacattgagatgcaaagaatacctgcaaaggggaatcgccagacgatcgcttcacgcctgtcacagagcaccccatgatcaggccatggcgtcgaacaccgcggtaccatttgggcccaattctcttgatcttgacatcctggaaccctgccttctggaaccattctatgtactcttcttccttggggaagagcatccacatgtcggcgaagaagcgtgacagccaaaaggttgggtgaaccgggccaatcaaacaggcaactccacctagcttcaggaccctgtaggcttccctgattcctcgttgtggatcaggccagtactcaatgctgacaaaacaacaccattggtaagtatggcatcaaaactgatcaatgaccacatatgactaagcttaaaagtaaatgaaacacaggtcactgatgaccacatgcatattgctttcacatttcaggtaatagattcattggataggagtgatacttaacatcttcacatggacaatataagtcaaaacaatcataagagccagtattatcatattaacagaaatctgatccaacaaatatataaacatctcatcatggacacttgaatcactgataacattaaccatttactagaaaccacactactgcaaatatatccaaacagatggttttgtcatggtgtcaacgctagatcacatagaatttaacaggtattttctttcattgatacagaaatctatacatcaatatcaattcaaggatatgcaatgacaaaataatggcattagttgatgatagatgaaaaaaaatgttattgtacagttcacatgtgaagtgtaacacattcacattagcaaagagaaaattcttgaccaaacttaagttgtgcccacacataccgtatattggtttatcctagtaaacacaaccaagaatgaattaacttcacaatcctgaacacatatttatacaagacagcacataaaatgttttatatttattttaataaatcctgcatcttcttatagccaaattataagaatgattctgtgttgctatatgtcctgttaaacacgacagaataaaccttcatgggttgctcatgggaaacacaattgagaaaataccgtaaactgcaatgcaaagaggacattagagaatcacctcccagcagagacatagcgatcaaatgtgtcagttgggtaggggaggtcctcagcgtcaccctcaatgatgttcaccccattcagtgccgccttctgcctggccttctcaagctggtgtggagactggtctagcagtgtgacattctcattgtccacatgcttgacaatccccaatgtggtgaacccagtgccaccaccaacatcgacaaccttgagcccatggtggtagagttcagcaggctccaatgcatcatccctcatgtcctcggtccaatgccccgggtttatgacatggtcatacacaatggaaaggaacctatagaaccagaatgcttccttcttgtgttgtatgaacctaggttgtgatgctggcctagcagaggagaccgcgcactttggtgcgatatactttacccttgatctcacaccacttctatttctcaaaggaatcaaacctattttggaaggccccaagaatcctaatccaccgggagctctaaatgtagaggaagaaaccatttccttctttgttgtttgaaaacttggatcaaatcacgtatggcttagtgtatcgttgggcaagagaatactggttttatgtacgaaagaatcaacaaacaggaatggactaggtagctcctatgcttcatttgtgaggtttcttggtagatttacaatgc
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| CDS seq | atggtttcttcctctacatttagagctcccggtggattaggattcttggggccttccaaaataggtttgattcctttgagaaatagaagtggtgtgagatcaagggtaaagtatatcgcaccaaagtgcgcggtctcctctgctaggccagcatcacaacctaggttcatacaacacaagaaggaagcattctggttctataggttcctttccattgtgtatgaccatgtcataaacccggggcattggaccgaggacatgagggatgatgcattggagcctgctgaactctaccaccatgggctcaaggttgtcgatgttggtggtggcactgggttcaccacattggggattgtcaagcatgtggacaatgagaatgtcacactgctagaccagtctccacaccagcttgagaaggccaggcagaaggcggcactgaatggggtgaacatcattgagggtgacgctgaggacctcccctacccaactgacacatttgatcgctatgtctctgctgggagcattgagtactggcctgatccacaacgaggaatcagggaagcctacagggtcctgaagctaggtggagttgcctgtttgattggcccggttcacccaaccttttggctgtcacgcttcttcgccgacatgtggatgctcttccccaaggaagaagagtacatagaatggttccagaaggcagggttccaggatgtcaagatcaagagaattgggcccaaatggtaccgcggtgttcgacgccatggcctgatcatggggtgctctgtgacaggcgtgaagcgatcgtctggcgattcccctttgcagcttggtccaaaggctgaagatgttgagaaaccagtgaatcctttcaccttcatcttccgcttcgtcatggggacgatttgcgcttcttattatgtgctggtacctatctacatgtggatgaaagatcagattgtccccaaggaccaaccaatttaa
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| Protein seq | MVSSSTFRAPGGLGFLGPSKIGLIPLRNRSGVRSRVKYIAPKCAVSSARPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPAELYHHGLKVVDVGGGTGFTTLGIVKHVDNENVTLLDQSPHQLEKARQKAALNGVNIIEGDAEDLPYPTDTFDRYVSAGSIEYWPDPQRGIREAYRVLKLGGVACLIGPVHPTFWLSRFFADMWMLFPKEEEYIEWFQKAGFQDVKIKRIGPKWYRGVRRHGLIMGCSVTGVKRSSGDSPLQLGPKAEDVEKPVNPFTFIFRFVMGTICASYYVLVPIYMWMKDQIVPKDQPI |
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| Function | 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic [UniProtKB/Swiss-Prot:Q6ZLD3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0004880 | OsLima_07g0004880.01 | Chr07 | 4427533 | 4430044 | - | NAM | ||
| CDS seq | atggtttcttcctctacatttagagctcccggtggattaggattcttggggccttccaaaataggtttgattcctttgagaaatagaagtggtgtgagatcaagggtaaagtatatcgcaccaaagtgcgcggtctcctctgctaggccagcatcacaacctaggttcatacaacacaagaaggaagcattctggttctataggttcctttccattgtgtatgaccatgtcataaacccggggcattggaccgaggacatgagggatgatgcattggagcctgctgaactctaccaccatgggctcaaggttgtcgatgttggtggtggcactgggttcaccacattggggattgtcaagcatgtggacaatgagaatgtcacactgctagaccagtctccacaccagcttgagaaggccaggcagaaggcggcactgaatggggtgaacatcattgagggtgacgctgaggacctcccctacccaactgacacatttgatcgctatgtctctgctgggagcattgagtactggcctgatccacaacgaggaatcagggaagcctacagggtcctgaagctaggtggagttgcctgtttgattggcccggttcacccaaccttttggctgtcacgcttcttcgccgacatgtggatgctcttccccaaggaagaagagtacatagaatggttccagaaggcagggttccaggatgtcaagatcaagagaattgggcccaaatggtaccgcggtgttcgacgccatggcctgatcatggggtgctctgtgacaggcgtgaagcgatcgtctggcgattcccctttgcagcttggtccaaaggctgaagatgttgagaaaccagtgaatcctttcaccttcatcttccgcttcgtcatggggacgatttgcgcttcttattatgtgctggtacctatctacatgtggatgaaagatcagattgtccccaaggaccaaccaatttaa
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| Protein seq | MVSSSTFRAPGGLGFLGPSKIGLIPLRNRSGVRSRVKYIAPKCAVSSARPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPAELYHHGLKVVDVGGGTGFTTLGIVKHVDNENVTLLDQSPHQLEKARQKAALNGVNIIEGDAEDLPYPTDTFDRYVSAGSIEYWPDPQRGIREAYRVLKLGGVACLIGPVHPTFWLSRFFADMWMLFPKEEEYIEWFQKAGFQDVKIKRIGPKWYRGVRRHGLIMGCSVTGVKRSSGDSPLQLGPKAEDVEKPVNPFTFIFRFVMGTICASYYVLVPIYMWMKDQIVPKDQPI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0004880 | OsLima_07g0004880.02 | Chr07 | 4427533 | 4430044 | - | IsoSeq | ||
| CDS seq | atggttccagaaggcagggttccaggatgtcaagatcaagagaattgggcccaaatggtaccgcggtgttcgacgccatggcctgatcatggggtgctctgtgacaggcgtgaagcgatcgtctggcgattcccctttgcagcttggtccaaa |
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| Protein seq | MVPEGRVPGCQDQENWAQMVPRCSTPWPDHGVLCDRREAIVWRFPFAAWSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.293053 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0179300 | RBH | 1.621730 | 1.864255 | 0.600923 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08200 | RBH | 1.096699 | 1.253867 | 0.154689 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0179300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005000 | RBH | 0.128137 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004960 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004860 | RBH | 0.000000 | 0.0 | 0.666765 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004790 | RBH | 0.0 | 0.059402 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004900 | RBH | 5.499780 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0069600 | RBH | 4.2124505 | 8.9194905 | 10.4578605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005420 | RBH | 0.0 | 0.0 | 0.085972 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0072700 | RBH | 8.453942 | 2.7339905 | 0.6303905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004900 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004940 | RBH | 3.838874 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005010 | RBH | 0.0 | 0.0 | 0.461665 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005070 | RBH | 0.000000 | 0.0 | 0.548805 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004850 | RBH | 0.407130 | 0.000000 | 0.850510 |
