Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0003870 | OGI:07009940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:3651446-3653633 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagccccaatctgctcggccatgcttagcatgcccctcctccataccaccagcatgatctacacgaagaacctcacagccggcctcccggatccgtcgctggacctgctttaccccggtgagctcatcggcgttgccggcaactaccaccaccaaagatgagtgaagcagttcattgggtaaatgtaacatgtatagctgctagttggcactaaaagaatcaactgatcatttaccaatagtcaaggcaagagcacttcccttctttcatatgatggaacctactaccatctctcacaataatctccctctgaaaaaccattgtcaccatcttactgaactcatggcaatccccacagacacgaaggttcttgacgatacggattgggctgccagcttcaagaactatgaagccataagcaattgccaatcgctcgctgtgcaccttgaccgcgtgcaccttctcttcctccccaatgtcatgcaatacagatgacacatccggtacataccctgcctctgtcaaccttttgttgatcatgtcaagtgtatcatagatctgcacagaatccttgtgataagtgtctcctactagaaatttgtgcaccttcccatgcgcttccatcaagctccagccggctgacttgctggtaccgcgactagacatcaatttcctgacttccctgacttcatcccatttgtttgcctttgcatatatacctgagaggaggacataatagccagaatgagttggatccagttcaattagcttgttaccaacagaaacccccaaatccaccaggccatgtgtcttgcaagaagagagtattgtgccccagagaactggatcaggtgcaatatgcatcccttcgatcaattcaatggcttccggaacaaggccagcacgacccagaagatcaaccatgcagccataatgctccatttctggctcaatgcgatatttctccactatcagtttgaaatagcgtcgcccctcagcaacaagaccagaacggctacagccattgagcacaccaacaaaagtcacatttgtaggggacagaccctcactgataaaccgctcgaagagctccaccgcatccctccccaaaccatgagcagcaaggccacagatcatggcgttccacgcgaaaacatccctcctcctcatgccatcgaaaacctccctcgcaaccgccacacacccgcactttgcatacatgtccacgagtgccgctcctacattcatacacaccggcattcccgacctctgtaccacattatgcacaaacttcccatgttcaagcaagcccaaccgtgctgctgccgacaatgccgtcaccactgcagcctgattcggcctcacgccctgctccaccatgttccggaacactcccagcgccacctccagctcctcttccttcacatacccgcccaccagcgtgctccaagaaatctcatccctcactggcatttcgtcgaacacctcccgcgcaacggtcatcatgccagttcgcacgtaccccgcgagaacctcgttccacgtgaggacgtcccgcacgcgcggcagctcgtcgaacaccctccgcattgcccccacgtcgccggagacgccgtagaagtgcaccagcgcgttccgcacgaacaggtcgcccgcggcgcccgccttcacggcgagggcgtgcacgtgggagcccaggaaggagcaagcggaggcggagggtcccgcggcgttgaggtggttggagatggaggcgaggaggaaggtgaaggagtgcgggttgcggcgccggaagcgggagaagagggtgagcgggagcggatgcggcagcacgcggaggaggttgttggacgcgaaggcggaggtggagttggcgcgccggaacagcgcgagcgggtaggcgtagtggtcgccatcgccgccgccgtcgtcgccgcggtggcgcgtcttgtccgggaggaggcgggggaggacggcgaggaggtggggcatggcgcgcgaggcggcgagcccgaggacggcgagtcgggcgtgcgcctgctggacttggcggacggtggggctcggcggaagcagcgccgcaaggagctccctcgcgtcggcggcgcggcgggcctcgaaggtgggggctcgccagacggcggccgccgccgccgccgccgccggcggtggcgcgccgagctgcat
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| CDS seq | atgcagctcggcgcgccaccgccggcggcggcggcggcggcggccgccgtctggcgagcccccaccttcgaggcccgccgcgccgccgacgcgagggagctccttgcggcgctgcttccgccgagccccaccgtccgccaagtccagcaggcgcacgcccgactcgccgtcctcgggctcgccgcctcgcgcgccatgccccacctcctcgccgtcctcccccgcctcctcccggacaagacgcgccaccgcggcgacgacggcggcggcgatggcgaccactacgcctacccgctcgcgctgttccggcgcgccaactccacctccgccttcgcgtccaacaacctcctccgcgtgctgccgcatccgctcccgctcaccctcttctcccgcttccggcgccgcaacccgcactccttcaccttcctcctcgcctccatctccaaccacctcaacgccgcgggaccctccgcctccgcttgctccttcctgggctcccacgtgcacgccctcgccgtgaaggcgggcgccgcgggcgacctgttcgtgcggaacgcgctggtgcacttctacggcgtctccggcgacgtgggggcaatgcggagggtgttcgacgagctgccgcgcgtgcgggacgtcctcacgtggaacgaggttctcgcggggtacgtgcgaactggcatgatgaccgttgcgcgggaggtgttcgacgaaatgccagtgagggatgagatttcttggagcacgctggtgggcgggtatgtgaaggaagaggagctggaggtggcgctgggagtgttccggaacatggtggagcagggcgtgaggccgaatcaggctgcagtggtgacggcattgtcggcagcagcacggttgggcttgcttgaacatgggaagtttgtgcataatgtggtacagaggtcgggaatgccggtgtgtatgaatgtaggagcggcactcgtggacatgtatgcaaagtgcgggtgtgtggcggttgcgagggaggttttcgatggcatgaggaggagggatgttttcgcgtggaacgccatgatctgtggccttgctgctcatggtttggggagggatgcggtggagctcttcgagcggtttatcagtgagggtctgtcccctacaaatgtgacttttgttggtgtgctcaatggctgtagccgttctggtcttgttgctgaggggcgacgctatttcaaactgatagtggagaaatatcgcattgagccagaaatggagcattatggctgcatggttgatcttctgggtcgtgctggccttgttccggaagccattgaattgatcgaagggatgcatattgcacctgatccagttctctggggcacaatactctcttcttgcaagacacatggcctggtggatttgggggtttctgttggtaacaagctaattgaactggatccaactcattctggctattatgtcctcctctcaggtatatatgcaaaggcaaacaaatgggatgaagtcagggaagtcaggaaattgatgtctagtcgcggtaccagcaagtcagccggctggagcttgatggaagcgcatgggaaggtgcacaaatttctagtaggagacacttatcacaaggattctgtgcagatctatgatacacttgacatgatcaacaaaaggttgacagaggcagggtatgtaccggatgtgtcatctgtattgcatgacattggggaggaagagaaggtgcacgcggtcaaggtgcacagcgagcgattggcaattgcttatggcttcatagttcttgaagctggcagcccaatccgtatcgtcaagaaccttcgtgtctgtggggattgccatgagttcattgccggcaacgccgatgagctcaccggggtaaagcaggtccagcgacggatccgggaggccggctgtgaggttcttcgtgtagatcatgctggtggtatggaggaggggcatgctaagcatggccgagcagattggggctaa
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| Protein seq | MQLGAPPPAAAAAAAAVWRAPTFEARRAADARELLAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKTRHRGDDGGGDGDHYAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRTGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTSKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFIAGNADELTGVKQVQRRIREAGCEVLRVDHAGGMEEGHAKHGRADWG |
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| Function | Pentatricopeptide repeat-containing protein At3g62890 [UniProtKB/Swiss-Prot:Q683I9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0003870 | OsLima_07g0003870.01 | Chr07 | 3651446 | 3653633 | - | NAM | ||
| CDS seq | atgcagctcggcgcgccaccgccggcggcggcggcggcggcggccgccgtctggcgagcccccaccttcgaggcccgccgcgccgccgacgcgagggagctccttgcggcgctgcttccgccgagccccaccgtccgccaagtccagcaggcgcacgcccgactcgccgtcctcgggctcgccgcctcgcgcgccatgccccacctcctcgccgtcctcccccgcctcctcccggacaagacgcgccaccgcggcgacgacggcggcggcgatggcgaccactacgcctacccgctcgcgctgttccggcgcgccaactccacctccgccttcgcgtccaacaacctcctccgcgtgctgccgcatccgctcccgctcaccctcttctcccgcttccggcgccgcaacccgcactccttcaccttcctcctcgcctccatctccaaccacctcaacgccgcgggaccctccgcctccgcttgctccttcctgggctcccacgtgcacgccctcgccgtgaaggcgggcgccgcgggcgacctgttcgtgcggaacgcgctggtgcacttctacggcgtctccggcgacgtgggggcaatgcggagggtgttcgacgagctgccgcgcgtgcgggacgtcctcacgtggaacgaggttctcgcggggtacgtgcgaactggcatgatgaccgttgcgcgggaggtgttcgacgaaatgccagtgagggatgagatttcttggagcacgctggtgggcgggtatgtgaaggaagaggagctggaggtggcgctgggagtgttccggaacatggtggagcagggcgtgaggccgaatcaggctgcagtggtgacggcattgtcggcagcagcacggttgggcttgcttgaacatgggaagtttgtgcataatgtggtacagaggtcgggaatgccggtgtgtatgaatgtaggagcggcactcgtggacatgtatgcaaagtgcgggtgtgtggcggttgcgagggaggttttcgatggcatgaggaggagggatgttttcgcgtggaacgccatgatctgtggccttgctgctcatggtttggggagggatgcggtggagctcttcgagcggtttatcagtgagggtctgtcccctacaaatgtgacttttgttggtgtgctcaatggctgtagccgttctggtcttgttgctgaggggcgacgctatttcaaactgatagtggagaaatatcgcattgagccagaaatggagcattatggctgcatggttgatcttctgggtcgtgctggccttgttccggaagccattgaattgatcgaagggatgcatattgcacctgatccagttctctggggcacaatactctcttcttgcaagacacatggcctggtggatttgggggtttctgttggtaacaagctaattgaactggatccaactcattctggctattatgtcctcctctcaggtatatatgcaaaggcaaacaaatgggatgaagtcagggaagtcaggaaattgatgtctagtcgcggtaccagcaagtcagccggctggagcttgatggaagcgcatgggaaggtgcacaaatttctagtaggagacacttatcacaaggattctgtgcagatctatgatacacttgacatgatcaacaaaaggttgacagaggcagggtatgtaccggatgtgtcatctgtattgcatgacattggggaggaagagaaggtgcacgcggtcaaggtgcacagcgagcgattggcaattgcttatggcttcatagttcttgaagctggcagcccaatccgtatcgtcaagaaccttcgtgtctgtggggattgccatgagttcattgccggcaacgccgatgagctcaccggggtaaagcaggtccagcgacggatccgggaggccggctgtgaggttcttcgtgtagatcatgctggtggtatggaggaggggcatgctaagcatggccgagcagattggggctaa
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| Protein seq | MQLGAPPPAAAAAAAAVWRAPTFEARRAADARELLAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKTRHRGDDGGGDGDHYAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRTGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTSKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFIAGNADELTGVKQVQRRIREAGCEVLRVDHAGGMEEGHAKHGRADWG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0163900 | RBH | 0.657727 | 0.374961 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g06960 | RBH | 0.383340 | 0.252951 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0163900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0003950 | RBH | 0.000000 | 0.0 | 0.315793 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0003930 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003820 | RBH | 0.602031 | 0.0 | 0.829696 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003770 | RBH | 0.053619 | 0.024929 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0003860 | RBH | 0.938339 | 4.915242 | 0.523630 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0056100 | RBH | 0.6124985 | 0.9787955 | 0.314627 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004390 | RBH | 0.145336 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0060000 | RBH | 0.9916425 | 1.2075455 | 3.6008835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0003870 | RBH | 0.0 | 3.023599 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003910 | RBH | 1.180814 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0003940 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0003850 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004030 | RBH | 0.078588 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0003830 | RBH | 0.637667 | 7.586926 | 6.181174 |
