Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0002610 | OGI:07006270 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:2487536-2488249 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaagaggtttcttcatccaccatcttgttgatgaactcggggatctgcacgtcgaacccgaagagcgtgatgttgtgcggcatcgacggcatcttcgccgacggcatcggcgggaacgacaggtcggtcaagccggagaagtccggcatcttgggcatctgcgggatgcccgcggcggcggcgaccgccggctggttcttccccgccgccgcgagctcggcgaccagcttctccggcgggacgttggccgggagctgcttctgcacgtccggcgggaggttcaccagcacctccggcggcatgtcggccagcatctccggcgacacgttcgccggcagcttggccagcacgtccggcggcaagttggctagcacgtccggtgacacgttggccggaatcttggacagcgtctccggtggcacgttggccggcaagctggccaccatctccggtggcacgttggccggaaggttcgccggcaagctggccagcatctccggtggcacgctggccggcaagttggctggcatctccggtggcacgttggccggcaagttcaccggaatgttcgccggagggggcggcgccggtgctcctggctggccatttgggatcaccggcaatggagtttcagctaggaggcgcaagcatgcagaggaatggacgtttatggacaaaatggccaggaaagtcacgtagaagagggatctcat
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| CDS seq | atgagatccctcttctacgtgactttcctggccattttgtccataaacgtccattcctctgcatgcttgcgcctcctagctgaaactccattgccggtgatcccaaatggccagccaggagcaccggcgccgccccctccggcgaacattccggtgaacttgccggccaacgtgccaccggagatgccagccaacttgccggccagcgtgccaccggagatgctggccagcttgccggcgaaccttccggccaacgtgccaccggagatggtggccagcttgccggccaacgtgccaccggagacgctgtccaagattccggccaacgtgtcaccggacgtgctagccaacttgccgccggacgtgctggccaagctgccggcgaacgtgtcgccggagatgctggccgacatgccgccggaggtgctggtgaacctcccgccggacgtgcagaagcagctcccggccaacgtcccgccggagaagctggtcgccgagctcgcggcggcggggaagaaccagccggcggtcgccgccgccgcgggcatcccgcagatgcccaagatgccggacttctccggcttgaccgacctgtcgttcccgccgatgccgtcggcgaagatgccgtcgatgccgcacaacatcacgctcttcgggttcgacgtgcagatccccgagttcatcaacaagatggtggatgaagaaacctcttaa
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| Protein seq | MRSLFYVTFLAILSINVHSSACLRLLAETPLPVIPNGQPGAPAPPPPANIPVNLPANVPPEMPANLPASVPPEMLASLPANLPANVPPEMVASLPANVPPETLSKIPANVSPDVLANLPPDVLAKLPANVSPEMLADMPPEVLVNLPPDVQKQLPANVPPEKLVAELAAAGKNQPAVAAAAGIPQMPKMPDFSGLTDLSFPPMPSAKMPSMPHNITLFGFDVQIPEFINKMVDEETS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0002610 | OsLima_07g0002610.01 | Chr07 | 2487536 | 2488249 | - | NAM | ||
| CDS seq | atgagatccctcttctacgtgactttcctggccattttgtccataaacgtccattcctctgcatgcttgcgcctcctagctgaaactccattgccggtgatcccaaatggccagccaggagcaccggcgccgccccctccggcgaacattccggtgaacttgccggccaacgtgccaccggagatgccagccaacttgccggccagcgtgccaccggagatgctggccagcttgccggcgaaccttccggccaacgtgccaccggagatggtggccagcttgccggccaacgtgccaccggagacgctgtccaagattccggccaacgtgtcaccggacgtgctagccaacttgccgccggacgtgctggccaagctgccggcgaacgtgtcgccggagatgctggccgacatgccgccggaggtgctggtgaacctcccgccggacgtgcagaagcagctcccggccaacgtcccgccggagaagctggtcgccgagctcgcggcggcggggaagaaccagccggcggtcgccgccgccgcgggcatcccgcagatgcccaagatgccggacttctccggcttgaccgacctgtcgttcccgccgatgccgtcggcgaagatgccgtcgatgccgcacaacatcacgctcttcgggttcgacgtgcagatccccgagttcatcaacaagatggtggatgaagaaacctcttaa
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| Protein seq | MRSLFYVTFLAILSINVHSSACLRLLAETPLPVIPNGQPGAPAPPPPANIPVNLPANVPPEMPANLPASVPPEMLASLPANLPANVPPEMVASLPANVPPETLSKIPANVSPDVLANLPPDVLAKLPANVSPEMLADMPPEVLVNLPPDVQKQLPANVPPEKLVAELAAAGKNQPAVAAAAGIPQMPKMPDFSGLTDLSFPPMPSAKMPSMPHNITLFGFDVQIPEFINKMVDEETS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0141450 | RBH | 0.0 | 0.610618 | 7.692869 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0141450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002570 | RBH | 0.266072 | 0.0 | 2.608855 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002570 | RBH | 0.0 | 0.0 | 6.202478 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002460 | RBH | 0.0 | 0.0 | 10.863752 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002390 | RBH | 0.086650 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002510 | RBH | 1.466156 | 0.0 | 1.583693 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0036800 | RBH | 5.1847195 | 0.469293 | 0.677124 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002590 | RBH | 0.0 | 0.0 | 3.760312 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0042200 | RBH | 2.805018 | 1.3453065 | 5.1529265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002610 | RBH | 0.305902 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002690 | RBH | 0.041886 | 0.0 | 1.441291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002580 | RBH | 0.308816 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002690 | RBH | 0.0 | 0.0 | 1.782213 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002500 | RBH | 0.950495 | 0.0 | 14.426486 |
