Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0002480 | OGI:07005880 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:2416970-2418519 | ||||||||
| Gene Symbol | C3H48, OsC3H48 | ||||||||||
| DNA seq | ctagtaggaatgccggaaaccacaggtgtcaccgcgggggcaggtctgaccggagaagaaataccagcacggctccttcttcccaagctccacctccccatgcgcgaacctgcagttggctgcaaacaggcataatccaccactcgtgaacgtcttgcatagcttcgtcttgtacttgtcttcccctcccaaagcggcggaggacgaatcctgcaaaggcaaacgaatgcatatatgatcaaaagttcaaaaccaaaaatgaaatctgcatcgactctgtatagtaaattaaatctggatgcatgaggacaagatgactaggtattgcgtggtagatcgaatcaatcagttatatatatattgaagacgaaatcaattaaactcaccgaggacgaggagccctcaccggcgtcggctagagagctcaccgccaccaccaaacgcaggtcatcttctccatgggcgtacttgcatgtgttgccacgaggacaaccaagcccacgggaataatattccgcgcacagcttcgtcttgtgttcctccagtccgaatgccagctgctgttgcggtcgcgctgctggtccagctccggcggcgatgggggcgaatgacggcggcggagcatagggtgcgccgggaatgggcacgaactcgaaccgcccacgcccagtgacggtggaggccggtgtgtgtgcagcctctcgcgccaggatcgaacgccgagtccactcggagtcggagagcggtgaggaacagcgcactaaccaggcacggctagcggcggagcacggcggcggcgctgacgacgggccgaccaactcgcggtcgagcggagaatcgaaggccgtggcgtacgggagaccgaggaatggggacacgtggccggcttctgcgagcgcggacgaggtgatgtagtggcggtaccggtaaccggcggcgggggcggatgaggagagggcggagtagaggtcctggcgcccacgggtggtggggacgaaggcgggggcatctgcgttgaggtggccaccggggacagggccgactacgccgtcgacgagtaggtcgaggtcgaggtcggcgacgaggtcgtcggggtggtcctcctcaccatcgtggccgccggggacgaagacgtggcggccgccggatccctcctcctcctggccgccgcttctggggacgaggggcccgtcgtcgatgtagtgctcctcctcctcctcctcctcctcggcgaggtggtcgtcgtcggcgtggtcggcactatcctccgccatgctgctggtcggcagagcaccaaaaccggtcgcggggaggcgcctggtcgcgctggtgccggcacccatggagcatgacccgaccccgaacttcatgccgacgagctcgccctggaagaccggcgcgtggatgctgccgacgaggatgctcggggtgacgtggactggctgcggcggggaggaggtggcgccgcctgcgtctcggccgacggggacgccaacgccagagcggtaatcctcagcgacgtggccgccggggacgacgacgtcgcggcc
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| CDS seq | atgaagttcggggtcgggtcatgctccatgggtgccggcaccagcgcgaccaggcgcctccccgcgaccggttttggtgctctgccgaccagcagcatggcggaggatagtgccgaccacgccgacgacgaccacctcgccgaggaggaggaggaggaggaggagcactacatcgacgacgggcccctcgtccccagaagcggcggccaggaggaggagggatccggcggccgccacgtcttcgtccccggcggccacgatggtgaggaggaccaccccgacgacctcgtcgccgacctcgacctcgacctactcgtcgacggcgtagtcggccctgtccccggtggccacctcaacgcagatgcccccgccttcgtccccaccacccgtgggcgccaggacctctactccgccctctcctcatccgcccccgccgccggttaccggtaccgccactacatcacctcgtccgcgctcgcagaagccggccacgtgtccccattcctcggtctcccgtacgccacggccttcgattctccgctcgaccgcgagttggtcggcccgtcgtcagcgccgccgccgtgctccgccgctagccgtgcctggttagtgcgctgttcctcaccgctctccgactccgagtggactcggcgttcgatcctggcgcgagaggctgcacacacaccggcctccaccgtcactgggcgtgggcggttcgagttcgtgcccattcccggcgcaccctatgctccgccgccgtcattcgcccccatcgccgccggagctggaccagcagcgcgaccgcaacagcagctggcattcggactggaggaacacaagacgaagctgtgcgcggaatattattcccgtgggcttggttgtcctcgtggcaacacatgcaagtacgcccatggagaagatgacctgcgtttggtggtggcggtgagctctctagccgacgccggtgagggctcctcgtcctcggattcgtcctccgccgctttgggaggggaagacaagtacaagacgaagctatgcaagacgttcacgagtggtggattatgcctgtttgcagccaactgcaggttcgcgcatggggaggtggagcttgggaagaaggagccgtgctggtatttcttctccggtcagacctgcccccgcggtgacacctgtggtttccggcattcctactag
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| Protein seq | MKFGVGSCSMGAGTSATRRLPATGFGALPTSSMAEDSADHADDDHLAEEEEEEEEHYIDDGPLVPRSGGQEEEGSGGRHVFVPGGHDGEEDHPDDLVADLDLDLLVDGVVGPVPGGHLNADAPAFVPTTRGRQDLYSALSSSAPAAGYRYRHYITSSALAEAGHVSPFLGLPYATAFDSPLDRELVGPSSAPPPCSAASRAWLVRCSSPLSDSEWTRRSILAREAAHTPASTVTGRGRFEFVPIPGAPYAPPPSFAPIAAGAGPAARPQQQLAFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSSAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCWYFFSGQTCPRGDTCGFRHSY |
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| Function | Putative zinc finger CCCH domain-containing protein 48 [UniProtKB/Swiss-Prot:Q8GVZ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0002480 | OsLima_07g0002480.01 | Chr07 | 2416970 | 2418519 | - | NAM | ||
| CDS seq | atgaagttcggggtcgggtcatgctccatgggtgccggcaccagcgcgaccaggcgcctccccgcgaccggttttggtgctctgccgaccagcagcatggcggaggatagtgccgaccacgccgacgacgaccacctcgccgaggaggaggaggaggaggaggagcactacatcgacgacgggcccctcgtccccagaagcggcggccaggaggaggagggatccggcggccgccacgtcttcgtccccggcggccacgatggtgaggaggaccaccccgacgacctcgtcgccgacctcgacctcgacctactcgtcgacggcgtagtcggccctgtccccggtggccacctcaacgcagatgcccccgccttcgtccccaccacccgtgggcgccaggacctctactccgccctctcctcatccgcccccgccgccggttaccggtaccgccactacatcacctcgtccgcgctcgcagaagccggccacgtgtccccattcctcggtctcccgtacgccacggccttcgattctccgctcgaccgcgagttggtcggcccgtcgtcagcgccgccgccgtgctccgccgctagccgtgcctggttagtgcgctgttcctcaccgctctccgactccgagtggactcggcgttcgatcctggcgcgagaggctgcacacacaccggcctccaccgtcactgggcgtgggcggttcgagttcgtgcccattcccggcgcaccctatgctccgccgccgtcattcgcccccatcgccgccggagctggaccagcagcgcgaccgcaacagcagctggcattcggactggaggaacacaagacgaagctgtgcgcggaatattattcccgtgggcttggttgtcctcgtggcaacacatgcaagtacgcccatggagaagatgacctgcgtttggtggtggcggtgagctctctagccgacgccggtgagggctcctcgtcctcggattcgtcctccgccgctttgggaggggaagacaagtacaagacgaagctatgcaagacgttcacgagtggtggattatgcctgtttgcagccaactgcaggttcgcgcatggggaggtggagcttgggaagaaggagccgtgctggtatttcttctccggtcagacctgcccccgcggtgacacctgtggtttccggcattcctactag
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| Protein seq | MKFGVGSCSMGAGTSATRRLPATGFGALPTSSMAEDSADHADDDHLAEEEEEEEEHYIDDGPLVPRSGGQEEEGSGGRHVFVPGGHDGEEDHPDDLVADLDLDLLVDGVVGPVPGGHLNADAPAFVPTTRGRQDLYSALSSSAPAAGYRYRHYITSSALAEAGHVSPFLGLPYATAFDSPLDRELVGPSSAPPPCSAASRAWLVRCSSPLSDSEWTRRSILAREAAHTPASTVTGRGRFEFVPIPGAPYAPPPSFAPIAAGAGPAARPQQQLAFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSSAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCWYFFSGQTCPRGDTCGFRHSY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0139000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04650 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0139000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002310 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0034500 | RBH | 0 | 0 | 0.035845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002440 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0040000 | RBH | 0 | 0 | 0.008143 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002550 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002380 | RBH | 0.0 | 0.0 | 0.0 |
