Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0002410 | OGI:07005730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:2315555-2317469 | ||||||||
| Gene Symbol | NAC96, NAC94, ONAC096, ONAC96, NAC4, OsNAC4 | ||||||||||
| DNA seq | atgaagaggggttgtgaagatgaacttggagctggtgatgtgattctacgaggggtggaggaggtagaagaggaagaagatgatgacctggttctccccggattccggttccatcctaccgacgaggagctagtgacgttctaccttcgccggaagatcgccgggaagcggctgagcatcgagatcatcaaggagatggacatctacaagcatgatccctccgacttcctcagtaagttcattcaactaattaaaagttcatgatcaccaaatacttattgaagaaaaaaaatcacagcatgcatgcatatatatatatatatatatatgcttatagttcatggtgatctacaagctcatgcgcttggagcatgatgttcctatcagctaagattgggtagtttcatttgcatgcaatagaataacatgacagatttagtgaccaggccttgagtaaattcaagaattaacacatataattaacaacatgaataatatctatatttacgtgatttttttttgtttcaaactataagctagatcgatcattcgatcatgaaaagctaaatcttgtggggattaatcaaattaattaattaaccatgttgatgcatgcagagacgagcacggtgggcagcgagaaggaatggtacttcttctgccttcgagggaggaagtacaggaacagcatccgacccaaccgggtcaccggctccggcttctggaaggccaccggaatcgaccgcccaatctgctccgccgccggcggcggcggcggcgactgcatcggcctcaagaagtcgctcgtctactaccgcggcagcgccggcaagggcaccaagaccgactggatgatgcacgagttccgcctccctccgccgcccgccgacgacctcgccgccggccgctcctcccctcctccgagcctccaagaagcggtaagttaattaccaatattttaaatagcgtgctaagcattactagcggttactctttttgttccataatataagggattttgagtggatgtgacacatcctaatacaataaatctagacagatactaggatgtgtcgcatcaacataaaatcccttatattattagacggagggagtagcttcttagatagatatagcggcgggttaagtagaactatagcgactaaattatatatgagagtaaataattagttaaaacccttctcaaatagctatagcgggatatttaaaacctgttaattacatgcatcttcttcatctccggcgacgtcgccgtcgatcggccattgcatgcactttcccgcgaacccggcttggttccattcacacgtgcgtggaaacagtggcgtgacgcactgacacgtgtcctcgaacgtgtcgaaatgttagcacgacgacgaactgaacttttgttgtgtgcgtgaaaaaaatgcaggaagtttggaccatctgccgaatcttccagaggaacatcacccacaagaagcagccgcagccgcagctcgccgtcgccgccgccgcggtgccggcgccggtgccggacgcgacgagctcgatcaccggcagcctcgagtccgacagcgccggcgacgacgtcgtcgagtacatgaacaccctccagccgccgccggcgagcaacgtgaacggtggctacagcaaccagcactacttccaggagcaatggaacagtagcagcaatgataataccacagtgtttcatcagcatgcggcggcggcgccgccgccggagccttcgccggcgacggcgatggccggattcggccatgatcagagcgttctcagctcgccggcgccgagcgatttctactacaaggatggatgcaacgatgacatttacagaatggtgatggagctcgccgatccgagcttgttctatgatcatatatatgcttaa
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| CDS seq | atgaagaggggttgtgaagatgaacttggagctggtgatgtgattctacgaggggtggaggaggtagaagaggaagaagatgatgacctggttctccccggattccggttccatcctaccgacgaggagctaacgagcacggtgggcagcgagaaggaatggtacttcttctgccttcgagggaggaagtacaggaacagcatccgacccaaccgggtcaccggctccggcttctggaaggccaccggaatcgaccgcccaatctgctccgccgccggcggcggcggcggcgactgcatcggcctcaagaagtcgctcgtctactaccgcggcagcgccggcaagggcaccaagaccgactggatgatgcacgagaacatcacccacaagaagcagccgcagccgcagctcgccgtcgccgccgccgcggtgccggcgccggtgccggacgcgacgagctcgatcaccggcagcctcgagtccgacagcgccggcgacgacgtcgtcgagtacatgaacaccctccagccgccgccggcgagcaacgtgaacggtggctacagcaaccagcactacttccaggagcaatggaacagtagcagcaatgataataccacagtgtttcatcagcatgcggcggcggcgccgccgccggagccttcgccggcgacggcgatggccggattcggccatgatcagagcgttctcagctcgccggcgccgagcgatttctactacaaggatggatgcaacgatgacatttacagaatggtgatggagctcgccgatccgagcttgttctatgatcatatatatgcttaa
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| Protein seq | MKRGCEDELGAGDVILRGVEEVEEEEDDDLVLPGFRFHPTDEELTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPICSAAGGGGGDCIGLKKSLVYYRGSAGKGTKTDWMMHENITHKKQPQPQLAVAAAAVPAPVPDATSSITGSLESDSAGDDVVEYMNTLQPPPASNVNGGYSNQHYFQEQWNSSSNDNTTVFHQHAAAAPPPEPSPATAMAGFGHDQSVLSSPAPSDFYYKDGCNDDIYRMVMELADPSLFYDHIYA |
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| Function | Transcription factor JUNGBRUNNEN 1 [UniProtKB/Swiss-Prot:Q9SK55] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0002410 | OsLima_07g0002410.01 | Chr07 | 2315555 | 2317469 | + | NAM | ||
| CDS seq | atgaagaggggttgtgaagatgaacttggagctggtgatgtgattctacgaggggtggaggaggtagaagaggaagaagatgatgacctggttctccccggattccggttccatcctaccgacgaggagctaacgagcacggtgggcagcgagaaggaatggtacttcttctgccttcgagggaggaagtacaggaacagcatccgacccaaccgggtcaccggctccggcttctggaaggccaccggaatcgaccgcccaatctgctccgccgccggcggcggcggcggcgactgcatcggcctcaagaagtcgctcgtctactaccgcggcagcgccggcaagggcaccaagaccgactggatgatgcacgagaacatcacccacaagaagcagccgcagccgcagctcgccgtcgccgccgccgcggtgccggcgccggtgccggacgcgacgagctcgatcaccggcagcctcgagtccgacagcgccggcgacgacgtcgtcgagtacatgaacaccctccagccgccgccggcgagcaacgtgaacggtggctacagcaaccagcactacttccaggagcaatggaacagtagcagcaatgataataccacagtgtttcatcagcatgcggcggcggcgccgccgccggagccttcgccggcgacggcgatggccggattcggccatgatcagagcgttctcagctcgccggcgccgagcgatttctactacaaggatggatgcaacgatgacatttacagaatggtgatggagctcgccgatccgagcttgttctatgatcatatatatgcttaa
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| Protein seq | MKRGCEDELGAGDVILRGVEEVEEEEDDDLVLPGFRFHPTDEELTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPICSAAGGGGGDCIGLKKSLVYYRGSAGKGTKTDWMMHENITHKKQPQPQLAVAAAAVPAPVPDATSSITGSLESDSAGDDVVEYMNTLQPPPASNVNGGYSNQHYFQEQWNSSSNDNTTVFHQHAAAAPPPEPSPATAMAGFGHDQSVLSSPAPSDFYYKDGCNDDIYRMVMELADPSLFYDHIYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0566500 | SBH | 0.0 | 0.0 | 1.143076 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04560 | RBH | 1.550036 | 2.949609 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0138200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002350 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002350 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002240 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002170 | RBH | 0.0 | 0.063838 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002290 | RBH | 0.0 | 21.237593 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0033800 | RBH | 0.181313 | 5.364192 | 0.4889445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002370 | RBH | 0.0 | 0.499470 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0038200 | RBH | 0.227813 | 1.6459295 | 0.221512 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002420 | RBH | 0.0 | 6.427459 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002400 | RBH | 0.0 | 9.165067 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002480 | RBH | 0.0 | 0.189260 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002370 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002310 | RBH | 0.0 | 10.368970 | 0.0 |
